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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0519300 |
Transcript ID | LotjaGi1g1v0519300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0519300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104289074..104291385) extracted from Lotus japonicus Gifu genome v1.2.
AAAACACCAACCTATCTCCATTCTCCATCCATGCATGGTGAAATTTCCGAGCTCTATCAGCAACGGAAAGATGAACAGGC GAAGAAGCTCGGAGAACGAGAACCCCTTTCTCCTTCCCCATCTCCCTGACGAGTTGATTCTTCTTCAAATCCTTCTTCGA CTACCAGTTCGATCTCTGCTCCGTTTCAAAACCGTCTGCAAATCATGGCTCTCTCGCATTTCCGAACCCCAATTCGCCAA ATCCCATTTTGACCTAGCTGCTTCACCCACCCACCGCATCTTCCTAAACGACGCCCCTGGTTTCAAAATCGAATCATTCG ACACCGATTCATCGCTCCACGATGATTCTGCTGTGGTTAACCTCAAATTCCCGCTTGCACCGCCGTGTCCTCGAATGCTG TTATGGGCAAACACCCGTTTGATGGTTATGGGTTCTTGCAGAGGGTTTGTGTTTTTAGCCAATTACAAAGGTGACATTGT TGTATGGAATCCTTCAACTGGTGAGCGAAGAAGAATTCCAGATAGTTTTAATATGGGTTTAGAATTTCTTTATGGTATTG GGTATGACAAAATAGGTGATGATTACTTGTTAATTTATATAGAATCGAATGACCTCGTCGTGGCTGAGTATATGCCCGAA ATTAAGATTTTCTCTTTGAAATATAATTCACATGTCTTGTGTGGTATGAATGATGAGTATGTGGATTTGGGATCTGATTT TAGACCTGGTTTGTTTTTGAATGACTCTCTGCATTGGTTGGTTAAGTCTCGTGTTAGGAACGTTCGTGTAGTTCTCGCTT TTGATTTGGTAGAGGGGAGTTTATTAGAGATTCCTATGTCATTGCATGATTTAGCTGTGGAATTGGGCGATGATAACAAA GAGTATCATTTGAGGGTGATGGGAGGGTGTCTCTGTCTGTGTCACTCGCGTGTGGGTATGGCTGAAATATGGATGATGAT GGAGTATAAAGTGGAATCATCTTGGACTAAGATTGTTTTGTCAGATTACGACTTCCCTTGCAACTCCTTTTTTCCAATAT GGTTCACCAAATGTGGTGATATTTTTGGATCAAATGAGGTTGGAAGATTATTGAAGCTTAACGATAAAGGAAACCTGCTT GAGCATCGCGCACTTTGGAAGGGGAAAGGGGAGAGGAGCTATCGTCTATTATACACTCATATGTATACAGAGAGTTTACT TTCACTCCCTGAGATAGTGAGTGGACATTACCCACCCGAATATTACCCACCCTTTAGTGGCTTTGAGGAAATAGATGCAC ATGAACAACAACCTGCTGACTTAGATCAAGGGGGTGAAGATGACCAACAACCTGGTGACTTAGATCAAGGGAGTGAAGAT GATCAACAAGCAAGTGAAGATGACCAACAACCTACATAATCTGAGGAAGAACTTGCAGATGACCAAAACCTGGGTGGCTT TGATGAAGCAACTGGAGATGACCAACACTAGCAGACACGGAGTATCAATGCATGTAATGTTCACCAATCCTTTTCACCAT TTTATTTCTATTTATGATGCATAATGAAAACTGAGGAGTTATATGCAAAATATACATGAAAATGATTCCTTAATCCTAGC TTGTTTTATTTCTCTCTCTATAAGCAAATGATACATGAAATTGCTAAGAAAGGTGTGGTTGGTGGACTGAATTCACTAGC AATATTTGATGTCTTGCTTGCTCAGAATAATGAAGACAATTTGGGTGGAAATTTATGTAAGTAAAACAACTATTGTCCAG AATGAAATAACAGTTTTCGAACTAAAAATATTATAGAATGTATAATATGGTGACATTTACAATAAGCTCATTTTTCCTTC AGGCACAACCGCACAAAGTATGCAAGAACTCTCTATATAGTCAGGTCAATGTCCTAGCTTTCCTTCAAATGATGATACTA CTGGAAGAAAACATAATATTTAGAAGAAAATGTAATTTATATGATGTGAAATGGTCTTGTATGACTGGTGTCTGTTTCAG TGGTGATTTTAGTGAGGCTGGTGTGTAGATAGACTTCAGAATCTAATCACGTATGAAGTATGTAAGTTAGCAAATTCTAG TTGTAATTAATACTTGATATTTTGTGGCTTTGTTTCACGCCTTTACCTTCAAACATACCACTGTGTGTTTATTACCAATA TATTTTGGTTCTGATAGTGTTTATCACCACTTGAAATCAATAATTAACTTTGAGAAAGACTTCCATTTCCTTTCTTGTTT ACCTTCACCTTATTCTTCTATTATGTGTTATGGTCATATCTTCAGACTTATAAGTCAAAAGTTATATATGAA
CDS sequence (LotjaGi1g1v0519300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAATTTCCGAGCTCTATCAGCAACGGAAAGATGAACAGGCGAAGAAGCTCGGAGAACGAGAACCCCTTTCTCCT TCCCCATCTCCCTGACGAGTTGATTCTTCTTCAAATCCTTCTTCGACTACCAGTTCGATCTCTGCTCCGTTTCAAAACCG TCTGCAAATCATGGCTCTCTCGCATTTCCGAACCCCAATTCGCCAAATCCCATTTTGACCTAGCTGCTTCACCCACCCAC CGCATCTTCCTAAACGACGCCCCTGGTTTCAAAATCGAATCATTCGACACCGATTCATCGCTCCACGATGATTCTGCTGT GGTTAACCTCAAATTCCCGCTTGCACCGCCGTGTCCTCGAATGCTGTTATGGGCAAACACCCGTTTGATGGTTATGGGTT CTTGCAGAGGGTTTGTGTTTTTAGCCAATTACAAAGGTGACATTGTTGTATGGAATCCTTCAACTGGTGAGCGAAGAAGA ATTCCAGATAGTTTTAATATGGGTTTAGAATTTCTTTATGGTATTGGGTATGACAAAATAGGTGATGATTACTTGTTAAT TTATATAGAATCGAATGACCTCGTCGTGGCTGAGTATATGCCCGAAATTAAGATTTTCTCTTTGAAATATAATTCACATG TCTTGTGTGGTATGAATGATGAGTATGTGGATTTGGGATCTGATTTTAGACCTGGTTTGTTTTTGAATGACTCTCTGCAT TGGTTGGTTAAGTCTCGTGTTAGGAACGTTCGTGTAGTTCTCGCTTTTGATTTGGTAGAGGGGAGTTTATTAGAGATTCC TATGTCATTGCATGATTTAGCTGTGGAATTGGGCGATGATAACAAAGAGTATCATTTGAGGGTGATGGGAGGGTGTCTCT GTCTGTGTCACTCGCGTGTGGGTATGGCTGAAATATGGATGATGATGGAGTATAAAGTGGAATCATCTTGGACTAAGATT GTTTTGTCAGATTACGACTTCCCTTGCAACTCCTTTTTTCCAATATGGTTCACCAAATGTGGTGATATTTTTGGATCAAA TGAGGTTGGAAGATTATTGAAGCTTAACGATAAAGGAAACCTGCTTGAGCATCGCGCACTTTGGAAGGGGAAAGGGGAGA GGAGCTATCGTCTATTATACACTCATATGTATACAGAGAGTTTACTTTCACTCCCTGAGATAGTGAGTGGACATTACCCA CCCGAATATTACCCACCCTTTAGTGGCTTTGAGGAAATAGATGCACATGAACAACAACCTGCTGACTTAGATCAAGGGGG TGAAGATGACCAACAACCTGGTGACTTAGATCAAGGGAGTGAAGATGATCAACAAGCAAGTGAAGATGACCAACAACCTA CATAA
Protein sequence (LotjaGi1g1v0519300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKFPSSISNGKMNRRRSSENENPFLLPHLPDELILLQILLRLPVRSLLRFKTVCKSWLSRISEPQFAKSHFDLAASPTH RIFLNDAPGFKIESFDTDSSLHDDSAVVNLKFPLAPPCPRMLLWANTRLMVMGSCRGFVFLANYKGDIVVWNPSTGERRR IPDSFNMGLEFLYGIGYDKIGDDYLLIYIESNDLVVAEYMPEIKIFSLKYNSHVLCGMNDEYVDLGSDFRPGLFLNDSLH WLVKSRVRNVRVVLAFDLVEGSLLEIPMSLHDLAVELGDDNKEYHLRVMGGCLCLCHSRVGMAEIWMMMEYKVESSWTKI VLSDYDFPCNSFFPIWFTKCGDIFGSNEVGRLLKLNDKGNLLEHRALWKGKGERSYRLLYTHMYTESLLSLPEIVSGHYP PEYYPPFSGFEEIDAHEQQPADLDQGGEDDQQPGDLDQGSEDDQQASEDDQQPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 22 | 22 | - | – | |
SUPERFAMILY | 21 | 77 | 57 | 9.42E-14 | ||
Pfam | 27 | 64 | 38 | 2.2E-7 | ||
PANTHER | 28 | 385 | 358 | 2.4E-80 | – | |
PANTHER | 28 | 385 | 358 | 2.4E-80 | – | |
Gene3D | 29 | 67 | 39 | 1.4E-7 | – | |
TIGRFAM | 133 | 343 | 211 | 1.7E-18 | ||
MobiDBLite | 408 | 454 | 47 | - | – | |
MobiDBLite | 428 | 454 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0519300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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