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LotjaGi1g1v0519300.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0519300
Transcript ID	LotjaGi1g1v0519300.2
Related isoforms 1	LotjaGi1g1v0519300.1
Lotus japonicus genome version	Gifu v1.2
Description	F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp\|Q8GXC7\|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr\|K7L8S8\|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0519300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:104289263..104291370) extracted from Lotus japonicus Gifu genome v1.2.

CTCCATTCTCCATCCATGCATGGTGAAATTTCCGAGCTCTATCAGCAACGGAAAGATGAACAGGCGAAGAAGCTCGGAGA ACGAGAACCCCTTTCTCCTTCCCCATCTCCCTGACGAGTTGATTCTTCTTCAAATCCTTCTTCGACTACCAGTTCGATCT CTGCTCCGTTTCAAAACCGTCTGCAAATCATGGCTCTCTCGCATTTCCGAACCCCAATTCGCCAAATCCCATTTTGACCT AGCTGCTTCACCCACCCACCGCATCTTCCTAAACGACGCCCCTGGTTTCAAAATCGAATCATTCGACACCGATTCATCGC TCCACGATGATTCTGCTGTGGTTAACCTCAAATTCCCGCTTGCACCGCCGTGTCCTCGAATGCTGTTATGGGCAAACACC CGTTTGATGGTTATGGGTTCTTGCAGAGGGTTTGTGTTTTTAGCCAATTACAAAGGTGACATTGTTGTATGGAATCCTTC AACTGGTGAGCGAAGAAGAATTCCAGATAGTTTTAATATGGGTTTAGAATTTCTTTATGGTATTGGGTATGACAAAATAG GTGATGATTACTTGTTAATTTATATAGAATCGAATGACCTCGTCGTGGCTGAGTATATGCCCGAAATTAAGATTTTCTCT TTGAAATATAATTCACATGTCTTGTGTGGTATGAATGATGAGTATGTGGATTTGGGATCTGATTTTAGACCTGGTTTGTT TTTGAATGACTCTCTGCATTGGTTGGTTAAGTCTCGTGTTAGGAACGTTCGTGTAGTTCTCGCTTTTGATTTGGTAGAGG GGAGTTTATTAGAGATTCCTATGTCATTGCATGATTTAGCTGTGGAATTGGGCGATGATAACAAAGAGTATCATTTGAGG GTGATGGGAGGGTGTCTCTGTCTGTGTCACTCGCGTGTGGGTATGGCTGAAATATGGATGATGATGGAGTATAAAGTGGA ATCATCTTGGACTAAGATTGTTTTGTCAGATTACGACTTCCCTTGCAACTCCTTTTTTCCAATATGGTTCACCAAATGTG GTGATATTTTTGGATCAAATGAGGTTGGAAGATTATTGAAGCTTAACGATAAAGGAAACCTGCTTGAGCATCGCGCACTT TGGAAGGGGAAAGGGGAGAGGAGCTATCGTCTATTATACACTCATATGTATACAGAGAGTTTACTTTCACTCCCTGAGAT AGTGAGTGGACATTACCCACCCGAATATTACCCACCCTTTAGTGGCTTTGAGGAAATAGATGCACATGAACAACAACCTG CTGACTTAGATCAAGGGGGTGAAGATGACCAACAACCTGGTGACTTAGATCAAGGGAGTGAAGATGATCAACAAGCAAGT GAAGATGACCAACAACCTACATAATCTGAGGAAGAACTTGCAGATGACCAAAACCTGGGTGGCTTTGATGAAGCAACTGG AGATGACCAACACTAGCAGACACGGAGTATCAATGCATGTAATGTTCACCAATCCTTTTCACCATTTTATTTCTATTTAT GATGCATAATGAAAACTGAGGAGTTATATGCAAAATATACATGAAAATGATTCCTTAATCCTAGCTTGTTTTATTTCTCT CTCTATAAGCAAATGATACATGAAATTGCTAAGAAAGGTGTGGTTGGTGGACTGAATTCACTAGCAATATTTGATGTCTT GCTTGCTCAGAATAATGAAGACAATTTGGGTGGAAATTTATGTAAGTAAAACAACTATTGTCCAGAATGAAATAACAGTT TTCGAACTAAAAATATTATAGAATGTATAATATGGTGACATTTACAATAAGCTCATTTTTCCTTCAGGCACAACCGCACA AAGTATGCAAGAACTCTCTATATAGTCAGGTCAATGTCCTAGCTTTCCTTCAAATGATGATACTACTGGAAGAAAACATA ATATTTAGAAGAAAATGTAATTTATATGATGTGAAATGGTCTTGTATGACTGGTGTCTGTTTCAGTGGTGATTTTAGTGA GGCTGGTGTGTAGATAGACTTCAGAATCTAATCACGTATGAAGTATGTAAGTTAGCAAATTCTAGTTGTAATTAATACTT GATATTTTGTGGCTTTGTTTCACGCCTT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0519300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAAATTTCCGAGCTCTATCAGCAACGGAAAGATGAACAGGCGAAGAAGCTCGGAGAACGAGAACCCCTTTCTCCT TCCCCATCTCCCTGACGAGTTGATTCTTCTTCAAATCCTTCTTCGACTACCAGTTCGATCTCTGCTCCGTTTCAAAACCG TCTGCAAATCATGGCTCTCTCGCATTTCCGAACCCCAATTCGCCAAATCCCATTTTGACCTAGCTGCTTCACCCACCCAC CGCATCTTCCTAAACGACGCCCCTGGTTTCAAAATCGAATCATTCGACACCGATTCATCGCTCCACGATGATTCTGCTGT GGTTAACCTCAAATTCCCGCTTGCACCGCCGTGTCCTCGAATGCTGTTATGGGCAAACACCCGTTTGATGGTTATGGGTT CTTGCAGAGGGTTTGTGTTTTTAGCCAATTACAAAGGTGACATTGTTGTATGGAATCCTTCAACTGGTGAGCGAAGAAGA ATTCCAGATAGTTTTAATATGGGTTTAGAATTTCTTTATGGTATTGGGTATGACAAAATAGGTGATGATTACTTGTTAAT TTATATAGAATCGAATGACCTCGTCGTGGCTGAGTATATGCCCGAAATTAAGATTTTCTCTTTGAAATATAATTCACATG TCTTGTGTGGTATGAATGATGAGTATGTGGATTTGGGATCTGATTTTAGACCTGGTTTGTTTTTGAATGACTCTCTGCAT TGGTTGGTTAAGTCTCGTGTTAGGAACGTTCGTGTAGTTCTCGCTTTTGATTTGGTAGAGGGGAGTTTATTAGAGATTCC TATGTCATTGCATGATTTAGCTGTGGAATTGGGCGATGATAACAAAGAGTATCATTTGAGGGTGATGGGAGGGTGTCTCT GTCTGTGTCACTCGCGTGTGGGTATGGCTGAAATATGGATGATGATGGAGTATAAAGTGGAATCATCTTGGACTAAGATT GTTTTGTCAGATTACGACTTCCCTTGCAACTCCTTTTTTCCAATATGGTTCACCAAATGTGGTGATATTTTTGGATCAAA TGAGGTTGGAAGATTATTGAAGCTTAACGATAAAGGAAACCTGCTTGAGCATCGCGCACTTTGGAAGGGGAAAGGGGAGA GGAGCTATCGTCTATTATACACTCATATGTATACAGAGAGTTTACTTTCACTCCCTGAGATAGTGAGTGGACATTACCCA CCCGAATATTACCCACCCTTTAGTGGCTTTGAGGAAATAGATGCACATGAACAACAACCTGCTGACTTAGATCAAGGGGG TGAAGATGACCAACAACCTGGTGACTTAGATCAAGGGAGTGAAGATGATCAACAAGCAAGTGAAGATGACCAACAACCTA CATAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0519300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVKFPSSISNGKMNRRRSSENENPFLLPHLPDELILLQILLRLPVRSLLRFKTVCKSWLSRISEPQFAKSHFDLAASPTH RIFLNDAPGFKIESFDTDSSLHDDSAVVNLKFPLAPPCPRMLLWANTRLMVMGSCRGFVFLANYKGDIVVWNPSTGERRR IPDSFNMGLEFLYGIGYDKIGDDYLLIYIESNDLVVAEYMPEIKIFSLKYNSHVLCGMNDEYVDLGSDFRPGLFLNDSLH WLVKSRVRNVRVVLAFDLVEGSLLEIPMSLHDLAVELGDDNKEYHLRVMGGCLCLCHSRVGMAEIWMMMEYKVESSWTKI VLSDYDFPCNSFFPIWFTKCGDIFGSNEVGRLLKLNDKGNLLEHRALWKGKGERSYRLLYTHMYTESLLSLPEIVSGHYP PEYYPPFSGFEEIDAHEQQPADLDQGGEDDQQPGDLDQGSEDDQQASEDDQQPT

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	22	22	-	–
SUPERFAMILY	SSF81383 View details on SSF81383 Search for proteins/transripts with this domain View external data on SSF81383	21	77	57	9.42E-14	IPR036047 Show description in modal box View details on IPR036047 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12937 View details on PF12937 Search for proteins/transripts with this domain View external data on PF12937	27	64	38	2.2E-7	IPR001810 Show description in modal box View details on IPR001810 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31790 View details on PTHR31790 Search for proteins/transripts with this domain View external data on PTHR31790	28	385	358	2.4E-80	–
PANTHER	PTHR31790:SF267 View details on PTHR31790:SF267 Search for proteins/transripts with this domain View external data on PTHR31790:SF267	28	385	358	2.4E-80	–
Gene3D	G3DSA:1.20.1280.50 View details on G3DSA:1.20.1280.50 Search for proteins/transripts with this domain View external data on G3DSA:1.20.1280.50	29	67	39	1.4E-7	–
TIGRFAM	TIGR01640 View details on TIGR01640 Search for proteins/transripts with this domain View external data on TIGR01640	133	343	211	1.7E-18	IPR017451 Show description in modal box View details on IPR017451 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	408	454	47	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	428	454	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0519300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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