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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0519600 |
| Transcript ID | LotjaGi1g1v0519600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT3G49180.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9M3B4|RID3_ARATH Protein ROOT INITIATION DEFECTIVE 3; TrEMBL-Plants: tr|A0A151UAW6|A0A151UAW6_CAJCA WD repeat-containing protein 18; Found in the gene: LotjaGi1g1v0519600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104333213..104338450) extracted from Lotus japonicus Gifu genome v1.2.
AAAATCTTTGAGAAAATCAAAAAGACGCTGGAAACAGAATGCAACTACGCAAGGCTCCCTCAACCAACTCGTCTTCCACC TCGATCGCGCCGGCCGCCGCGCTCCGCCGGCCACCGTGCTCACCCCCTCCTCAACCAACCAACGCTCCAGAAGCTGCACC CAAAAATCCTGTTCTGTCTGTTTTTGTTCAAAACTTGAATTGTTCTGTATGTTTCTGTAGCCTTTCCTTATTCCTGTTCT GTATGCTATGAATTTTAACTAATATTTTTCAATTTTTTAGCACTTATATGCATATAGTATAAATTATACTGCTATACAAC TTTCAGGGTGGCCGCTACGCCCCGCTATATGGTTTGTCTTGTCTAACTTGAATTCATAATGTGTTGTAGAATTTGTTACT GGTGTTGAATCCATTACATGAGAAGGGTAGATATTAGATACATAACAGCCTAGAGGAAGTTAGTTAGTTTGTTATACATT AAGTAAGCACATAATTAGTTGAATTATACTAAACAAGAGGTTGTAGAGTGGACTTGTGTTTCTAATATGTTGGAACTTTT TTTTGTTAGAGATAATTATTTGGAGGTGAAGGATGGAGGTTGTTTTGGCATCTTCCTCTGTTGATGGTGGGATAGGCTGT TGGGACCTTCAGACAGGTGCTGAACAGCTCCGTTACAAGTCGTGTTCCTCCCCTTCTCATGGTCTTGTCTCTGTTGGTGG TCGCTTCCTTGCATCTTCTCAGATTAGAGACCCATCGGCTTCCTCCGGTTCTGTTTCGAAATTATATTTCTGGTCCTGGT CCAAGGTCTTTATTTTGAAATTATTATTATTATACATGATGAGGAATGACAATGGATAACATTGACACTTGCATGTTGAT TTTGTAGCCTCAAGTTGAAGTTAGGAGCTTTCCTGCTGAACCCATTATGCCCCTTGCTGCGAATCACCCGGGCACCTATC TAGCTGGTGGGGCTTCGTCAGGTGATATATACTTTTGGCAGGTGAATTTTCTTATTTATTAGATCATTATGCATCAAGGC ATGGTTTGTGATTGATGGTTTTACTTTTCTTGGAAATTTTTTATGAAAAATTAGTGCTTGAAATTTAATTGCTCATGGAG ACGAAAAAAACACATTTTAAAGCTTTTAAGGCATTAGGTTATGGTGAATTTTGAATTGAAAATGTGAACTTAGTTTCTCT ATTTCTGTATACTTTGAAGTACTGAGTTGCATGCATTGCTTGTTAGGTCGAAACTGGCAGATTGCTTAAAAAGTGGCATG CTCACTATAGGGCTGTGACATGCCTGGTATTTTCTGAAGATGACTCCCTGCTGATATCTGGTTCTGAAGATGGATCTGTC AGAGTTTGGTCTCTCATCAAGTACATGAAACTCATCTCTCTCTCAAAAAAAATTATCCTATCAGTGTTTACTCACTTTTA TGATAATATATTCGAGTGCTGACCATTAAAACATTTGTTATGCTGCATGTCATGGTTCAGGATATTTGATGATTTGGGAA GCTTTGAAGCCAAAAATCTTTATCTACACAGTTTTACAGAGCACACTCTGTGTGTGACTGATGTTGTGATTGGTTATGGT GGGTGCAATGCAATTATAGTGTCAGCTTCAGAGGACCGGACCTGTAAGGTTTGTTTCACACTTTCACTGTTTTTCGTGGC AGTGTTGTACTAGAAAAGTAGATATGTAATGAAGTATGTTTACTGAATCATATATACTATTACCTTTTTTTTTTATCTTG AGTCTCTACTATTTGTAATTTCTAGAAATCTATGGTTGCTTATAACCTTCATATATCAAAGCATTAAATGTTTTCAGTCA AGGGGGAAAGCCACCTGTGCTTGTTTTTGGGTGATGAGGGTTAAGACTTAAGGGTGCATAATTATTCTATTAAAATGTGA GAGGCATAATTCTGAGGAAATTTTTGCCATGTAATATAATAAGCACAGCTAATTTAAAGAATAAATTCCTGATGAATGAA ATGTGTGCTGCTGCTATTTGACTATTATTAGAATGGATTTTAATCTACTCAGTTAGATCTCCATATTTAATTATAAATTA TTACTTTTATATTCCCTCCTTTTGGTTTGATTCTTGCATACAGAAGCTGTGCTTCTCAGTTGTGATTTATTTATTCAGAA TGAAATCATCTCTCCCATTGTACTGTAGTTGACCTCATGTTGTGGGATAAGGCTTGGTTGCTGTAGTCTCTATGTTTTTC ATTTTTCTGATATGGGTTCAGAATTCTAATTTATTTCCTTTTTTTAGGTGTGGAGCTTAGCTACGGGAACTCTACTAAGA AACATAGTATTCCCTTCAATAATTGATGCAATTGTCTTGGATCCTGCTGAACATATCTTTTATGCTGGCAGTAGAGATGG AAAAATATTTATTGCTGCACTTAACACTGAAAGAATCCCTACTAATAATTATGGGATGCATATCATTGGTTCATTTTCTA ACCACAGGTTATCTTCTCCTCTTATTGTCCAGTTCTTAAACTGGTAGACCTTTTCATGTCCTTTCTTCATGATCTTGGTT TTTCAGATTTACATCTGTTATATTTGCTTTACTCTCTTTGGATTGCTTTCCCTTTTGTATATTTTTAAAAATTGGTAAAT GTCGTTAATTCATGTTGTCTGCCTTGTGAAAATGATGTGAGCATATATGCTTTCACTTGTGCATAGAACTTAGAAGGTAA CATATATGGTAGTTTCAACAGTATTGTTGAGAGCAAAATGGTGGGAACATTCAGTTTTGATGTTTAGAATTTGTGGATAA CTTCAATGAGTATAGGCTTTCCTCATAATTTAGTTCTTAGCTATGGTGAATCAAAGCAAATATTGTATCCTTACAAAGGT CCAAACGGACAATGGATCTGAGAGTTTATATTGAAGTTATGATTTTATCGTGAGGTGATTTTAATTTATCAATCTTCAAC TATGTTGCAACTTGAAATATCCCTCCCCCCAATGCGTATCAGTGTCCCAGTTTGCTAATGCTAAAATAATGTATTAGAAT ATTATGTTTATTAAAATTTGTGCTTTAAAAGTGCTTTATCTGTCCATAAGCAGATACAGCGTTCTTTGTAATCTTAAGTT TGTTTGTAACACCTCACATGCCTTTTTGGTTGCTGCTCTGTTTGTCTGTTACAAAATTAAGTTGGTTCAAGCTGTGAAAT ATTGTTTGACTAATTAAATTTCCTCGTTTTAACAGCAAGGCAGTTACTTGCTTAGCATATGGCGCCGCTGGGAATTTGTT AATATCTGGGTCAGAGGATGGAATGGTTCGTGTTTGGAATGCAAGAACTTGTAACATCATCCGCATGTTTAAACATGCTA AAGGTATTGTATAAACTTTGTGAAACATGGTCTGCTTGTAGTTTGGTATAGTTTTGCAGAATTGGCTTTCTGATTGCATA TTTATGTTTAGTGAAGTTTGTATGATATGCTATTTATTATAAATGTTTTTTAGGGAATGGACAATGCTCAAGTTATTTTT TCTTCCAACTTACAACCTGCTAATGACAACTTAATGTATGTTTTTCTTTCCCAAAACCCTAATGACGACTTGTAGTTTTC TTAAGTGGTATGTTAAAGCAAGAAATATAACATATGGTAACTATGCATTCTGTATGCATACTTTGATTAAAACAAACATT GGCGGTATTTATACTACAGATACAACTCCAATTTATATCTGTGCTGTTATCACTTCATCTTTGATTTTCAACTTTTGATT GGTGCTGCACTACGTTATTTATGTGATGAGGATACAAAATATATTATCCGAATATACTCTGGATGATTGTGAGTGTGGCA ACTTATGAAAATAAGCTCAAAACAGGTCATAAGCTTTTATTCATAAGCTGAACAACTTAGTCATAAGCTTTTTATTCATA GGTTAATCTGAACAACTTATGAAAATAAGCTCAAAACAGGTCATAAGGTTTTTACATAAGCTCTCTCAAACACTTGTATA AGCGCTTCTGCTATGAGATAAAGCTAAAATAAGCTCTTCCAAAAGGTACCTTTATATATAAATGCATGCAATTGTCTTTT ATATGCTTAACCTCCATGCATATAGATGGTATAGTTCTAGTTTGCTCTCACATGTCATTTTTAATTGACTAAATCACCGT CATGAGGTATCCCATGTTTGTTTAAAATATTGAGTCTGCTTAAGCATGGATTTTATTTATATTTGATGTTAATGTTCCTG GGTGCTGCAGGACCAGTAAATAATATTCTTGTTGTTAAACAAGAAATTGACCCAAGTAATCATATGTCTTCTACTGTAGA AGCATCCTCAAGAAAGAAAGGGGCTTATTTATCCCCTCCATTAGAAAAATATACAAATTCTGCAGATGAAGACTCATATA TAAAGGTCAGCCTCAGGGGTGGCGCGACAGATGTTAAATATCTCAGTTCTGGAATGATATCTAAGTATGCTAAGGAACTT CAGGTTTGAGTTTCTTGATGATTATATGACTTAATATCTGTGGTTTTAAAGATAGCCATGACCTATTCCTGATTGTGACT GAACCTCTGTTAACCTGTATTTCAGCATCAAGGTTCAGCTGCTGCTTCTGAAATGGAGGTGGAGAAGCTAAAACATGATT GCCAAAGGTCAATGCAAATGGCAAATCAATTTAAGAAAATGTATGAAGATTTGATACAGTTTTATGTGAAGGAGCTGTTA GATGGAGGTCAAGCAAGAACCTTAGATGAAAATGGTAAATAAGGTGTTCTTATTTTCCCTAGACAAGGCACTGTTCAATT TTGCGGGTAGAATTCATATATTTCTATCGTCACAAGATTCTCTTCTGCGAGTTTACTAGTTATTAGCCCCAAAGAGTTTT TGTTTTTTTAAATGCCGTACTTATAGAATCTTCATCCTTTTAACGGTTAAAAGGATTCATTATTCATATCCTCTTACAAT ATTGGAGGGTGTTGTCATAGATTTTCGACTTTCGTTTTGCGAATTTTCATGAATCCATCCGTATGGTCCTTGCTTTTACC ATGTTTATAAGGTTTTCCTTTTGGTATAAACCACTCGGTATTGGTCATCCTTCGAATAGTCACAGTTAAGGTTTTATATC CCTCCTCCGAGTCTATTGTGCAAAAATTGAATATGAGAAGTCTTCTTGCACATTCAATTTGTGTTACTAACTGAGCTACC TCTTGGAGGACATGAGGTTTTCAAACTCTTGAGATTTA
CDS sequence (LotjaGi1g1v0519600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGTTTTGGCATCTTCCTCTGTTGATGGTGGGATAGGCTGTTGGGACCTTCAGACAGGTGCTGAACAGCTCCG TTACAAGTCGTGTTCCTCCCCTTCTCATGGTCTTGTCTCTGTTGGTGGTCGCTTCCTTGCATCTTCTCAGATTAGAGACC CATCGGCTTCCTCCGGTTCTGTTTCGAAATTATATTTCTGGTCCTGGTCCAAGCCTCAAGTTGAAGTTAGGAGCTTTCCT GCTGAACCCATTATGCCCCTTGCTGCGAATCACCCGGGCACCTATCTAGCTGGTGGGGCTTCGTCAGGTGATATATACTT TTGGCAGGTCGAAACTGGCAGATTGCTTAAAAAGTGGCATGCTCACTATAGGGCTGTGACATGCCTGGTATTTTCTGAAG ATGACTCCCTGCTGATATCTGGTTCTGAAGATGGATCTGTCAGAGTTTGGTCTCTCATCAAGATATTTGATGATTTGGGA AGCTTTGAAGCCAAAAATCTTTATCTACACAGTTTTACAGAGCACACTCTGTGTGTGACTGATGTTGTGATTGGTTATGG TGGGTGCAATGCAATTATAGTGTCAGCTTCAGAGGACCGGACCTGTAAGGTGTGGAGCTTAGCTACGGGAACTCTACTAA GAAACATAGTATTCCCTTCAATAATTGATGCAATTGTCTTGGATCCTGCTGAACATATCTTTTATGCTGGCAGTAGAGAT GGAAAAATATTTATTGCTGCACTTAACACTGAAAGAATCCCTACTAATAATTATGGGATGCATATCATTGGTTCATTTTC TAACCACAGCAAGGCAGTTACTTGCTTAGCATATGGCGCCGCTGGGAATTTGTTAATATCTGGGTCAGAGGATGGAATGG TTCGTGTTTGGAATGCAAGAACTTGTAACATCATCCGCATGTTTAAACATGCTAAAGGACCAGTAAATAATATTCTTGTT GTTAAACAAGAAATTGACCCAAGTAATCATATGTCTTCTACTGTAGAAGCATCCTCAAGAAAGAAAGGGGCTTATTTATC CCCTCCATTAGAAAAATATACAAATTCTGCAGATGAAGACTCATATATAAAGGTCAGCCTCAGGGGTGGCGCGACAGATG TTAAATATCTCAGTTCTGGAATGATATCTAAGTATGCTAAGGAACTTCAGCATCAAGGTTCAGCTGCTGCTTCTGAAATG GAGGTGGAGAAGCTAAAACATGATTGCCAAAGGTCAATGCAAATGGCAAATCAATTTAAGAAAATGTATGAAGATTTGAT ACAGTTTTATGTGAAGGAGCTGTTAGATGGAGGTCAAGCAAGAACCTTAGATGAAAATGGTAAATAA
Protein sequence (LotjaGi1g1v0519600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVVLASSSVDGGIGCWDLQTGAEQLRYKSCSSPSHGLVSVGGRFLASSQIRDPSASSGSVSKLYFWSWSKPQVEVRSFP AEPIMPLAANHPGTYLAGGASSGDIYFWQVETGRLLKKWHAHYRAVTCLVFSEDDSLLISGSEDGSVRVWSLIKIFDDLG SFEAKNLYLHSFTEHTLCVTDVVIGYGGCNAIIVSASEDRTCKVWSLATGTLLRNIVFPSIIDAIVLDPAEHIFYAGSRD GKIFIAALNTERIPTNNYGMHIIGSFSNHSKAVTCLAYGAAGNLLISGSEDGMVRVWNARTCNIIRMFKHAKGPVNNILV VKQEIDPSNHMSSTVEASSRKKGAYLSPPLEKYTNSADEDSYIKVSLRGGATDVKYLSSGMISKYAKELQHQGSAAASEM EVEKLKHDCQRSMQMANQFKKMYEDLIQFYVKELLDGGQARTLDENGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 218 | 218 | 7.3E-36 | ||
| PANTHER | 2 | 434 | 433 | 2.0E-126 | – | |
| SUPERFAMILY | 4 | 320 | 317 | 2.01E-49 | ||
| CDD | 4 | 298 | 295 | 4.68486E-40 | – | |
| SMART | 72 | 109 | 38 | 32.0 | ||
| ProSiteProfiles | 77 | 307 | 231 | 25.576 | ||
| SMART | 112 | 151 | 40 | 2.2E-10 | ||
| Pfam | 114 | 151 | 38 | 1.8E-7 | ||
| ProSiteProfiles | 119 | 152 | 34 | 14.719 | ||
| PRINTS | 138 | 152 | 15 | 3.8E-8 | ||
| SMART | 165 | 206 | 42 | 0.0062 | ||
| Pfam | 169 | 206 | 38 | 0.011 | ||
| ProSiteProfiles | 172 | 215 | 44 | 8.971 | ||
| PRINTS | 193 | 207 | 15 | 3.8E-8 | ||
| SMART | 209 | 247 | 39 | 44.0 | ||
| Gene3D | 219 | 368 | 150 | 7.6E-17 | ||
| SMART | 259 | 298 | 40 | 7.7E-8 | ||
| Pfam | 263 | 298 | 36 | 4.6E-7 | ||
| ProSiteProfiles | 266 | 307 | 42 | 15.655 | ||
| ProSitePatterns | 285 | 299 | 15 | - | ||
| PRINTS | 285 | 299 | 15 | 3.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0519600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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