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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0521000 |
| Transcript ID | LotjaGi1g1v0521000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0521000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104538703..104542704) extracted from Lotus japonicus Gifu genome v1.2.
CCCATTTTATTTTTCTATGGTTACAATTATATGTGCTCTTTTATTATGATATTATTTTAGATTTCAATAGATTCAATGTT TTAACCTATGAATCTTGGTATTTTGTGGAGAAAACTACACTCTGCTCTACCTGCGGCTGAAAGATGAACGGGCATCGACA ATGGAGCACGAAGAACCCTTCTCTCTTTCGCAATCTCCCTGAGGATTTGATTCCACAGATTCTGGTGAGGCTTCCGGTTC GATCTCTGCTCCGCTTCAAATCGGTGTGCAAATCATGGCGGTCTCTGATTTCCGATCCCAAATTCGGTAAATCCCATTTT GACCTAGCTGCTTCACCCACCCACCGATGTCTTACATTAGCTCATGGTTCTGAAATTGAGTCCATAGATGTAGATGCATC ACTTCAAAATTCTGAGTCTTCTGTAGTAAACCTCAAATTTCCGCCTTCACTATCACGCCCTTACAACCCTGTTGAGTTCT TTGGTTCTTGTAGAGGGTTTGTACTTGTAGCCTATGATCAAGATGATGTTGTTGTATGGAATCCATCAACCGGTGACCGG AGAAGAATCGCAGGCATTGGAGACTCGTTTTACAGTGCACATGGGTTTGGGTATGACAAATCAACAGATGACTACTTGAT TGTTATTATTAATTTGATTCCTTTCGACGACTATTGCGATTATGACGATCCAGACATTATAGCTGCTTACCCTAATCACA TTTCAATTTATTCCTTGAAAACTAATTCCTGGGTTTTCCAGGAGGGTCCTAATGTTAGGTATGTGGATTTGGAGTATTGT GAATTCTTAGTTGGGTGCTTGTTGAACGAGGCCCTGCATTGGTTGGTTATCTCGTCTGAAACCAAACGTCATGTCATTAT TGCCTTTGATTTGGTAGATAGGAGTTTGTCCGAGATTCCTTTGACGCCAGTTTTAGCCAGGAAATTAAAACATAGAGAGT ATCATTTACGGGTCATGGGAGGATGTCTCAGCTTATGTTACCCGGGTGACTTGGCTTCAGGGACTGAGATTTGGATGATG AAAGAATATAAAGTGCAGTCATCTTGGACTAAGTTATTTGTTTTTCGTATTTCTAACAATCCCTACGATGTTGTTTTTTA TCCAATATGTTTCACCAAACTTGGTGAAATTTTTGGTTCAAATGGCCGCGGAAGATTAATGATATTTAATGACAAAGAAC GTCGACCTGATCAGTACACATTTGTGCCCAAACCCCATAAAACTTTTACGTATAGAGAGCGTTTGCTACATTGTGGTATG TATAGAGAGACTTTACTATCGTTCCCTGATGACTTTGAGGAAGCAAGTGAAGATGACAAGCTGAAGTTTTCCAGGGAGAA AGCAAGTGAAGATGACAAATAGTAACTGACCATAAGAATTAGTGTATGTAGTTCTTCAATCTTTTTCGCCATTTTATTAC TATTTATCGTGCATAACGAAAATTGAGAAGTCATATGCAGATTCGTTTGCCTTGCTTGATGATTTTTAGGAGTGAAATAA GTGATTTATACACCAGTCATGGATAAAATTAGTTTGCTTTGCTTTATGATATGTAACAATACAATGACAGCAGTACAATA TTTGCATATCTTTATATTCTCTTGACACTATATCTTTCATCTGTTTTTAGTATTATTCTTTTGCTTTTTTCTTTCATAGA AAGGTTGACTGTGGCGTAACTAACTTATGAAATGGCTCTTATTTTACAGATATCTTGTCTATAGGCTTCTACAAAAATTT AGATTTAATAACAATGCCAGGAAAAAAAGTTGTAATGCATTTAACCAGGTGCTCACAGCTAGTGATGCAGAACAAAGTAA TGTTGGGAATAAGGAGAAGAAAACCTGAAAAGATAGAGGGATAGGAGGGGAATTTGGAGAATAGGGTGAGGGAGAAGGGA TGAGGGAAATATTCAGACTGTATAGCAGTTCTTAACTAGCCAACCCCCCGGTCTGTCCTGATACATACCCAATATGATAA CCTAGTAATTTTAATTGGATATAGATACTGATTTATTAGAGAAGATACTAATAAATGCCCTACTTTTAATAAATTACTGA ACACTGCAAATTTGTAGTTATGGAATGTGTTTTGGGAGATATTAGATGCAAATATAGTTGTGGAGGGATAAACTGATAGG TACTAGCATTCGAGAGACTCAGAACTCTCCACAAATCTTCTCAATGCTAGTGATACCATCGCTAAAGCTTCTTCCTATTA TTTATAGCCTCTACTCACTCCCTTTAGCTAACTAATTACTAACCATTCCACTAACTAACCATAACAAATTTCAGATAGTT CGGAAATTATTCATAGAATTACAACTATAAGATCTCCCATTCCATGAGATTAGGAAATTATTCATACGTTGAGTTGGTTG TGAGTTAAGATTTGATTACTGTGGCATTTGGACGCACAGAAATAGATGGTTATGACCTGCTTAAGTTGCTATGCCTTGTA GTTGACCTAGGAGCTCAACTAATGGTGCTTGCATTCTGGATAATTGATTAGAAATCCAGATGGTTTCTAACCTTTTTGAA ACCTCAAAGACAATAAAGTAATCCAATTTTAATTTTACTTTTTTTGGTCTGCTTATGCTTTTTATGTCTATGATAGGTAC TTGGAGTTAGTCGGTTAGTAGAGGGGTTAGTTTGTTAGTTGGGGGTTAGGGAGGCAAGTGCCTATAAATAAGAGTGGTCT AGAGAGGGATTAGCTATCCTGGGTATCATTTGTAATTGGGGGAAATTAGGGAGAGTCCTGGTCTCTCGAATTCCAGGGAT TTGTGCAGTTTTCATGTTATTCTTTGCCATAATACTCAGTGTTTTACTTTGTTCATAGCTGGCACCCATCAGTACTGGAC TCCAAGAAAGTACACAATGACATTATGAAAACACCCTTTCGATCCATAAAGTGAAACAATTTTATCATTATTCTTTCTAA TTATATTGTTGACATAAAAAAAAATGGCTGTAAATAATTAAAAAAATTGTTTGAGATTCTCCTAAAACAATTTCCCACTT TTGGACCCGTTAATTTCAAGTTCATAATCCAGTCTCGTGGAAGAAATATGAGGAAAACATGTTAGTGACCTTATGTTCAT TTTCTTTTATTCTTTGCTTCATAACTAATAACACTTGCATCGATTCACTCATGCATTTTTATTTTTTAGCTTCTTCTATC AGTGCCACTTGACCCACTCATTCCAATGTTTTATCATTCCTAACGTTGATGCTATGTGCAGTGATATGTGTTTAGTGAAT CTTCCCTCTCAAGTTGAACAACTGTGATTAATATTTATGTAACATATGCTCCTCACTTTAAAAAAAAAACATATGCTCCT CTCTCTCTCTCATAATTTAAATATCTTACTTTTTCTTTTTCCAAATTTTGCAGGTATGAGAAAAAACTTCCGTTTGAGCT ATTTCACTTGGGTGGTGATGAAGTTAATAAAAGTCAATTTGTCTGATTGTCTCGTTTCGTTCTTGCAACTTGCTAGCAAA CCACTTGACGTAAAAGCTTAAGTTTTTCTTTTCTAATATATATTGATATTGATTGATATTGATATTGATGTTGATGATCC TGCATTTTCCTTCTTCATTGACAACTAATATTGTTGGTTGATTTGTGGCCCTTGGTCCTTACTCTGCTAAATTTATCGTA ATAAACTACAATGAAATTTATATTCTATGTTTAGATATTACAAGGGGTTTTGATTCATCGGCACTCTTTTTTTTTCACTT ATTTCTCTTTCTATTTTTTTCTTCTTTTCTATTACATTACATATCATATCTCACATTTTTCTCACTTTCTTCCTTTTTCT CTACCGTGTAAGTGGAATTCAAGTGTGAGCATATACTTATTGCTTATGAGCGATAGTTGCTAAACCTTTTGGGCTTGCTT TCTTGATAACAAATTTATTTTTTGATACATCGGAAACTAAACAAAAAACAAGAAAAACTAAGCCACTCCAAAAGTATCCC GC
CDS sequence (LotjaGi1g1v0521000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGGGCATCGACAATGGAGCACGAAGAACCCTTCTCTCTTTCGCAATCTCCCTGAGGATTTGATTCCACAGATTCT GGTGAGGCTTCCGGTTCGATCTCTGCTCCGCTTCAAATCGGTGTGCAAATCATGGCGGTCTCTGATTTCCGATCCCAAAT TCGGTAAATCCCATTTTGACCTAGCTGCTTCACCCACCCACCGATGTCTTACATTAGCTCATGGTTCTGAAATTGAGTCC ATAGATGTAGATGCATCACTTCAAAATTCTGAGTCTTCTGTAGTAAACCTCAAATTTCCGCCTTCACTATCACGCCCTTA CAACCCTGTTGAGTTCTTTGGTTCTTGTAGAGGGTTTGTACTTGTAGCCTATGATCAAGATGATGTTGTTGTATGGAATC CATCAACCGGTGACCGGAGAAGAATCGCAGGCATTGGAGACTCGTTTTACAGTGCACATGGGTTTGGGTATGACAAATCA ACAGATGACTACTTGATTGTTATTATTAATTTGATTCCTTTCGACGACTATTGCGATTATGACGATCCAGACATTATAGC TGCTTACCCTAATCACATTTCAATTTATTCCTTGAAAACTAATTCCTGGGTTTTCCAGGAGGGTCCTAATGTTAGGTATG TGGATTTGGAGTATTGTGAATTCTTAGTTGGGTGCTTGTTGAACGAGGCCCTGCATTGGTTGGTTATCTCGTCTGAAACC AAACGTCATGTCATTATTGCCTTTGATTTGGTAGATAGGAGTTTGTCCGAGATTCCTTTGACGCCAGTTTTAGCCAGGAA ATTAAAACATAGAGAGTATCATTTACGGGTCATGGGAGGATGTCTCAGCTTATGTTACCCGGGTGACTTGGCTTCAGGGA CTGAGATTTGGATGATGAAAGAATATAAAGTGCAGTCATCTTGGACTAAGTTATTTGTTTTTCGTATTTCTAACAATCCC TACGATGTTGTTTTTTATCCAATATGTTTCACCAAACTTGGTGAAATTTTTGGTTCAAATGGCCGCGGAAGATTAATGAT ATTTAATGACAAAGAACGTCGACCTGATCAGTACACATTTGTGCCCAAACCCCATAAAACTTTTACGTATAGAGAGCGTT TGCTACATTGTGGTATGTATAGAGAGACTTTACTATCGTTCCCTGATGACTTTGAGGAAGCAAGTGAAGATGACAAGCTG AAGTTTTCCAGGGAGAAAGCAAGTGAAGATGACAAATAG
Protein sequence (LotjaGi1g1v0521000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGHRQWSTKNPSLFRNLPEDLIPQILVRLPVRSLLRFKSVCKSWRSLISDPKFGKSHFDLAASPTHRCLTLAHGSEIES IDVDASLQNSESSVVNLKFPPSLSRPYNPVEFFGSCRGFVLVAYDQDDVVVWNPSTGDRRRIAGIGDSFYSAHGFGYDKS TDDYLIVIINLIPFDDYCDYDDPDIIAAYPNHISIYSLKTNSWVFQEGPNVRYVDLEYCEFLVGCLLNEALHWLVISSET KRHVIIAFDLVDRSLSEIPLTPVLARKLKHREYHLRVMGGCLSLCYPGDLASGTEIWMMKEYKVQSSWTKLFVFRISNNP YDVVFYPICFTKLGEIFGSNGRGRLMIFNDKERRPDQYTFVPKPHKTFTYRERLLHCGMYRETLLSFPDDFEEASEDDKL KFSREKASEDDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 12 | 58 | 47 | 12.067 | ||
| SUPERFAMILY | 12 | 133 | 122 | 1.83E-16 | ||
| Pfam | 15 | 56 | 42 | 4.8E-10 | ||
| Gene3D | 16 | 54 | 39 | 4.4E-10 | – | |
| PANTHER | 17 | 373 | 357 | 3.8E-84 | – | |
| PANTHER | 17 | 373 | 357 | 3.8E-84 | – | |
| SMART | 18 | 58 | 41 | 1.8E-10 | ||
| TIGRFAM | 114 | 336 | 223 | 4.2E-21 | ||
| Pfam | 226 | 352 | 127 | 4.4E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0521000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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