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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0521100 |
| Transcript ID | LotjaGi1g1v0521100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A072TJ47|A0A072TJ47_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi1g1v0521100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104544126..104545334) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTTACTTATACTTCTTTAATGGATGGGTATTGCCTAGTTAGTGAAGTGAACAAGGCCAAATACATATTAAACTCCAT GCCTCAAAGGGGAGTTACTCCTAATGTTCAAAGCTACAATACCATGATTAATGGATTATGCAAGATTAAAATGGTTGATG AAGCTTTGAATCTCTTTGCAGAAATGGACTGCAAAAATATTGTTCCTAATACTGTGACTTTCAATTCTCTTATTGACGGT TTATGCAAATCAAGGAGAATCTCTCATGCTTGGGAGCTTGTTGATGAGATGCACGTTAAAGGTCAACCAGCCGATATTAT CACCTACAATTCTTTATTGGATGCTTTATGCAAAAGTCATCATGTTGACAAGGCAATTGCTTTAATCAAGAAAATTAGGG ATCAGGGTATTCAGCCAGATGTGCGCACATACAATATACTTATGGATGGACTATGCGAAGAAGGAAGACTTAAGAATGCA CAAGAGGTTATTCAGGATCTTTTAACTAAAGGCTATCCGGTAACTGTCCGAACATATACTATTATGATCAATGGGCTTTG TAAAGAGGGTTTGTTTGATGAAGCATTGACCTTGCTGTCTAAAATGGAAGACAACGGTTGCATGCCTGATGCTATAACTT TCGAAACAATCATTCGTGCTCTATTTGAGAAGGGTGAGAATTATAAGGCAGAGAAACTTCTACGTGAAATGATGGCAAGA GGTCTATTGGAATAGTAAAACTAGGTATTTAAGATGCTTTTAGTTACACATTATGTTATTTGTAATTTTTATGATTGCCC TATCTTTGCTTATTTATTTACAAAGGAAGATGGATTGCACAATGGACTCACACTTTAGTCATGAAAAAAGGTCATGTGTT ACTAGAATCATTTTAATATTGTACCTATCGTTGGTCTTTTTTTCTTCTTCTTCATGACTAGTTTACTTGTTCTCTTCTTT TTATCAATCGTGGATATGACTGCAACAAGCCATGCATCTGAGTTGAATTTCAACAGTTGTTTCAGAAAGAAATGTAAATG TATTCTTTTTCGCTCAATCTCAGGGTGACAACTACATGCACGCTAGTTCATTTGGCATTAGAAACAGATCATACCACTGA AAAGTATCTCAATAAAGAAATGGTTTGAGGAAATATAGCTGAGGAGGAAAGAGGAACATAGATTGGCAGAGTCAGGTGCA TGAACCAAA
CDS sequence (LotjaGi1g1v0521100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGGTATTGCCTAGTTAGTGAAGTGAACAAGGCCAAATACATATTAAACTCCATGCCTCAAAGGGGAGTTACTCC TAATGTTCAAAGCTACAATACCATGATTAATGGATTATGCAAGATTAAAATGGTTGATGAAGCTTTGAATCTCTTTGCAG AAATGGACTGCAAAAATATTGTTCCTAATACTGTGACTTTCAATTCTCTTATTGACGGTTTATGCAAATCAAGGAGAATC TCTCATGCTTGGGAGCTTGTTGATGAGATGCACGTTAAAGGTCAACCAGCCGATATTATCACCTACAATTCTTTATTGGA TGCTTTATGCAAAAGTCATCATGTTGACAAGGCAATTGCTTTAATCAAGAAAATTAGGGATCAGGGTATTCAGCCAGATG TGCGCACATACAATATACTTATGGATGGACTATGCGAAGAAGGAAGACTTAAGAATGCACAAGAGGTTATTCAGGATCTT TTAACTAAAGGCTATCCGGTAACTGTCCGAACATATACTATTATGATCAATGGGCTTTGTAAAGAGGGTTTGTTTGATGA AGCATTGACCTTGCTGTCTAAAATGGAAGACAACGGTTGCATGCCTGATGCTATAACTTTCGAAACAATCATTCGTGCTC TATTTGAGAAGGGTGAGAATTATAAGGCAGAGAAACTTCTACGTGAAATGATGGCAAGAGGTCTATTGGAATAG
Protein sequence (LotjaGi1g1v0521100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGYCLVSEVNKAKYILNSMPQRGVTPNVQSYNTMINGLCKIKMVDEALNLFAEMDCKNIVPNTVTFNSLIDGLCKSRRI SHAWELVDEMHVKGQPADIITYNSLLDALCKSHHVDKAIALIKKIRDQGIQPDVRTYNILMDGLCEEGRLKNAQEVIQDL LTKGYPVTVRTYTIMINGLCKEGLFDEALTLLSKMEDNGCMPDAITFETIIRALFEKGENYKAEKLLREMMARGLLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 162 | 162 | 1.0E-45 | ||
| Pfam | 1 | 25 | 25 | 1.2 | ||
| ProSiteProfiles | 1 | 27 | 27 | 7.903 | ||
| TIGRFAM | 1 | 29 | 29 | 1.8E-4 | ||
| PANTHER | 2 | 128 | 127 | 1.1E-63 | – | |
| PANTHER | 2 | 128 | 127 | 1.1E-63 | – | |
| Pfam | 27 | 76 | 50 | 1.8E-19 | ||
| ProSiteProfiles | 28 | 62 | 35 | 12.934 | ||
| TIGRFAM | 31 | 64 | 34 | 4.3E-11 | ||
| ProSiteProfiles | 63 | 97 | 35 | 11.882 | ||
| TIGRFAM | 65 | 94 | 30 | 3.8E-9 | ||
| PANTHER | 97 | 159 | 63 | 1.1E-63 | – | |
| PANTHER | 97 | 159 | 63 | 1.1E-63 | – | |
| Pfam | 98 | 145 | 48 | 3.8E-16 | ||
| ProSiteProfiles | 98 | 132 | 35 | 12.781 | ||
| TIGRFAM | 100 | 134 | 35 | 3.4E-9 | ||
| PANTHER | 129 | 234 | 106 | 1.1E-63 | – | |
| PANTHER | 129 | 234 | 106 | 1.1E-63 | – | |
| ProSiteProfiles | 133 | 167 | 35 | 11.542 | ||
| TIGRFAM | 136 | 167 | 32 | 7.6E-5 | ||
| Gene3D | 163 | 233 | 71 | 2.7E-20 | ||
| ProSiteProfiles | 168 | 202 | 35 | 13.493 | ||
| Pfam | 169 | 214 | 46 | 1.3E-14 | ||
| TIGRFAM | 171 | 204 | 34 | 5.6E-12 | ||
| ProSiteProfiles | 203 | 237 | 35 | 9.602 | ||
| TIGRFAM | 205 | 235 | 31 | 0.002 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0521100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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