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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0523400 |
| Transcript ID | LotjaGi1g1v0523400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G02490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M891|PP208_ARATH Pentatricopeptide repeat-containing protein At3g02490, mitochondrial; TrEMBL-Plants: tr|K7MV52|K7MV52_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0523400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104843755..104847172) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTATTTTCTTCAAAGGTTTATCATGGACAATAGAAGGCACCCTTCCTAATTCCCATAGGCCCAAACCATAGACCCA AATTTCCAATCACCAAACAAAAAAACAGAGCAAAATCCCAATCCCTGTAAAACGGAAACCCTAGTTTCTATTCACTTCCA TTTCCCTTTCTTCCTCACTCAAAGAAAAAAGCTTGGTTTTTTCAAATCTCAATCACTCAATCTCTTCGTTCTTCACAGCA ATGAGACATCAATGGCGTCTCCTCCACCTTCTTCTCCGCGCTCACAACCGCACTCCCAACCACACTCGCCACCTCCACCA ACTCCGCACCCTCTCTTCCCTCCCTCACCGTCCCACCCCCAATTTCACATTCCCTGCAAACCCTAGCCTCCGCCACTTCT CCTCCGACCCCGTTCTCGAACAACCCGATCCCGATCACGCCATCATCGCCGACTTGTTCTCCAAGCCCGCCGCCGATCCC TCCGTCGTCAAGAGCCAGCTCGATTCGAATCGCGTCTCGATCAACCACGATGCGGTTATTGCCGAATTGTTGAAGCTCAA ATCGAGCCCTGAAGTTGCTCAGAGATTCTTCCGGTGGGTCCTCGAGACTCACCCTGAGATGCTGAGCTCCAAATCGTATA ATGCGATGTTGCGCGCTTTGGGTGCCAATGGTTTGGTTGATGAGTTTTGGGAAATGGTCAGTGTGATGAAGAGAAAGGGT TACGGTGTTTCGAGGGGTGTTAAAGAGAGGGCTTTGGAGTGTTTTGAGAAGAATGGGTTGGAGGGTGATGTTGTGAGGTT GAAGGCTTTGTTTGATAAGAACAACTGTAATTCGGTTGAGAAGGATTGTGCTAGAGTGTGTAGGATAGTGAGGAATAATG TGTGGGGTGATGATGTTGAGAGGGAAATTAAGGACTTGAATGTTGGGTTTTCGAGTGAAGTGGTTAAGCTGGTTTTGGAG AGTTTAGGTTCTGAGCCGAGTAAGGCGTTGATATTTTTCAGGTGGGTGGAGGAGAGTGGGTTGTGTAAGCATGATGGATG CACGTATAATGCGATGGCGAGGGTGATAGGAAGGGAGGACACGATTGATCGGTTTTGGAAGCTTGTTGGTGACATGAGGG GTGCTGGGTTTGAGATGGAGATTGAGACCTTTGTTAAGGTGTTGGGGCGGTTTTGTAAGAGGAGGATGATAAAGGATGCT GTTGAGCTTTATGAATTCGCTATGGCTGGTGCGGATAAGCCTACGCCGCAGTGCTGCACCTTTCTGTTGAAGAAGGTTGT TACTTGTAAGGAGTTGGATATGGATTTGTTTTCAAGGGTTGTGAAGGTTTTTAGTGGAAGTGGGAATGCGATACCCAATT CCATGGTGGATGCGGTCCTGAAGTCTCTTACCAGTGTTGGCAGGATTGGAGAGTGGAATAAGGTTTTGAAAGAAATGGAA GATTGTGGGTATGTTGCTAGTGCTAATTGGCAGAGTGAAATTGCATTTCGACTTGGTGCTGTGGGTGAAAAGGAACAAGC TAATGAGTTTGTGAATAGGATTGAAGCAGCTGGGTCTGATTCAGATCAGGAGATTTGGGATTCTTTAGTTGTTGGGCACT GCGTAGCTGGTAACCTTGATAAAGCTTTGGATTCGTTTAAAGAGATGGTTAAGAAAGAGGGGATCTCATATGCAGGCGCT TTTGATTCGTTAATAAGTTCATATTGCAATATGAATAGGGCAATAGATGCATACAAGATTCTTTGTGAATTGGTGAAGGA AAAGGAGTTAAAGCCCAGGCATGATACCTACAAGTTGCTGGTATCTAAGTTATTGGCTCAGGGAGGATTCACAGATGCTC TAAATGTTTTTGGTTTAATGAAAACCCATGGGTTCCCTCCTTTTATTGATCCATTCATTAGACACATATCAAAGCGTGGA AGTGGTGATGATGCTGTTCAGTTTCTCAGTGCCATGACTTATAAGAAGTTTCCATCTACATCTGTGTACCTCAGAATGTT CGAGGCCTTCTTCAAGAAGAGAAGGCCTGAGGAAGCACAGAACTTCCTCTCCAAATGTCCACGCTACATCCGTAACCACG CAGATGTTTTGAATCTCTTTTGTTCCATGAACTCTAAAGAAGCTTCTTCTTCTTCTGGTATGTTGGCTGCTTAAGTTTTC AGAATATATCTCATGTTGTACTCTTCAGAAGAATGTGCAATTGCATATGTTGAGAATTTTTTGTGAGAACTTATTCTTTA TCCTTGATCTAAATGATTTGATCTAATAAGTTGAATCTACCTTTGAATAAAGCCAAAGAATACAAACATGCAATTTGTTG TTCACACCACATGTACTTTGCTAATACAAAACGTGTACTGTTATATGTCAAAACTTGCACAAATGCCTTCAGTTTATTAT GCAAACTTCATTTCTCTTGGACTAGACAAATTTCGGACGGATACTAAAAGTGTGTTTGTATATGCGATGTCTCTGTGATT TGGATTATGTGTCACCACAAATCTAAATACTGAATGCATGTTTCGATGTGTGTTGGGCACACACACTCGGATGCACATGC ACGTTAGTGGAGAAGCTTCATATTGTAGCTTATGGATTAATTTGATTGAGGTCTAAACTGAATTTCAAATGTACAACCAA ACATGCACTTGGTTATTCAATACGTTCTTGTTGAATTTTGTTAGTTTTTAATATGCTTGGTTTACTGTGTTTCTTGAGCA TTTTACATGGATAGTTGGATACATGAGACCCCTAACAGTTTAAGAATTGTTTGAACCAAGACAGTTGATTTTATATTTGT GTTTTTTTTAGGATTTGAACCCAGGACTTGAGAAATTTTAATCCATCAAGTACCATTTAGGCTATCCATACCAGTATATT TTTGTGTTTTTACTTTATAGTAAGAGACGTTAGCCTTTTTATTATCTAATTAAGATTTTTTTTGGTCAAATAATCTAATT AAGATTGAAGAACCTTACTTTGATTACTTTTAACTGGATTTCTTTTGGCGTCAATATTTCAATTCTGAATCACTGTGCCG CTATCTGCAAAAGTTCTATATTGTCAAACGTAGGTTTGAAAACAAGTGAAGAAGTAAAAAGAGTAAAAAAAAAGTTTCTC TTTAATATGGATCGGCCACTAGGATGTATATGATGGGGTTTGGGCTTGTTTTGTTTAGTTGTTCTTCCGTGAGTGTTATT TTAGCCTCTGGAATTTGAATCATTAACTCATTAAGAAGAGTTATTTTTATTTGATGTAAGTGTCGTTTGGCGTTCTTTAA TCATATCATCTTTGAAAAATAAAGGAAGTTTTAACTTAGTTTACACTTTCAATTAAGGTTTTTTAGTCTAGTTTTATTCA GTTACTTCTAAAAACGCTTTCTACATATCAAGTTGTATCGTAATATATTATCTTTCTA
CDS sequence (LotjaGi1g1v0523400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACATCAATGGCGTCTCCTCCACCTTCTTCTCCGCGCTCACAACCGCACTCCCAACCACACTCGCCACCTCCACCA ACTCCGCACCCTCTCTTCCCTCCCTCACCGTCCCACCCCCAATTTCACATTCCCTGCAAACCCTAGCCTCCGCCACTTCT CCTCCGACCCCGTTCTCGAACAACCCGATCCCGATCACGCCATCATCGCCGACTTGTTCTCCAAGCCCGCCGCCGATCCC TCCGTCGTCAAGAGCCAGCTCGATTCGAATCGCGTCTCGATCAACCACGATGCGGTTATTGCCGAATTGTTGAAGCTCAA ATCGAGCCCTGAAGTTGCTCAGAGATTCTTCCGGTGGGTCCTCGAGACTCACCCTGAGATGCTGAGCTCCAAATCGTATA ATGCGATGTTGCGCGCTTTGGGTGCCAATGGTTTGGTTGATGAGTTTTGGGAAATGGTCAGTGTGATGAAGAGAAAGGGT TACGGTGTTTCGAGGGGTGTTAAAGAGAGGGCTTTGGAGTGTTTTGAGAAGAATGGGTTGGAGGGTGATGTTGTGAGGTT GAAGGCTTTGTTTGATAAGAACAACTGTAATTCGGTTGAGAAGGATTGTGCTAGAGTGTGTAGGATAGTGAGGAATAATG TGTGGGGTGATGATGTTGAGAGGGAAATTAAGGACTTGAATGTTGGGTTTTCGAGTGAAGTGGTTAAGCTGGTTTTGGAG AGTTTAGGTTCTGAGCCGAGTAAGGCGTTGATATTTTTCAGGTGGGTGGAGGAGAGTGGGTTGTGTAAGCATGATGGATG CACGTATAATGCGATGGCGAGGGTGATAGGAAGGGAGGACACGATTGATCGGTTTTGGAAGCTTGTTGGTGACATGAGGG GTGCTGGGTTTGAGATGGAGATTGAGACCTTTGTTAAGGTGTTGGGGCGGTTTTGTAAGAGGAGGATGATAAAGGATGCT GTTGAGCTTTATGAATTCGCTATGGCTGGTGCGGATAAGCCTACGCCGCAGTGCTGCACCTTTCTGTTGAAGAAGGTTGT TACTTGTAAGGAGTTGGATATGGATTTGTTTTCAAGGGTTGTGAAGGTTTTTAGTGGAAGTGGGAATGCGATACCCAATT CCATGGTGGATGCGGTCCTGAAGTCTCTTACCAGTGTTGGCAGGATTGGAGAGTGGAATAAGGTTTTGAAAGAAATGGAA GATTGTGGGTATGTTGCTAGTGCTAATTGGCAGAGTGAAATTGCATTTCGACTTGGTGCTGTGGGTGAAAAGGAACAAGC TAATGAGTTTGTGAATAGGATTGAAGCAGCTGGGTCTGATTCAGATCAGGAGATTTGGGATTCTTTAGTTGTTGGGCACT GCGTAGCTGGTAACCTTGATAAAGCTTTGGATTCGTTTAAAGAGATGGTTAAGAAAGAGGGGATCTCATATGCAGGCGCT TTTGATTCGTTAATAAGTTCATATTGCAATATGAATAGGGCAATAGATGCATACAAGATTCTTTGTGAATTGGTGAAGGA AAAGGAGTTAAAGCCCAGGCATGATACCTACAAGTTGCTGGTATCTAAGTTATTGGCTCAGGGAGGATTCACAGATGCTC TAAATGTTTTTGGTTTAATGAAAACCCATGGGTTCCCTCCTTTTATTGATCCATTCATTAGACACATATCAAAGCGTGGA AGTGGTGATGATGCTGTTCAGTTTCTCAGTGCCATGACTTATAAGAAGTTTCCATCTACATCTGTGTACCTCAGAATGTT CGAGGCCTTCTTCAAGAAGAGAAGGCCTGAGGAAGCACAGAACTTCCTCTCCAAATGTCCACGCTACATCCGTAACCACG CAGATGTTTTGAATCTCTTTTGTTCCATGAACTCTAAAGAAGCTTCTTCTTCTTCTGGTATGTTGGCTGCTTAA
Protein sequence (LotjaGi1g1v0523400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRHQWRLLHLLLRAHNRTPNHTRHLHQLRTLSSLPHRPTPNFTFPANPSLRHFSSDPVLEQPDPDHAIIADLFSKPAADP SVVKSQLDSNRVSINHDAVIAELLKLKSSPEVAQRFFRWVLETHPEMLSSKSYNAMLRALGANGLVDEFWEMVSVMKRKG YGVSRGVKERALECFEKNGLEGDVVRLKALFDKNNCNSVEKDCARVCRIVRNNVWGDDVEREIKDLNVGFSSEVVKLVLE SLGSEPSKALIFFRWVEESGLCKHDGCTYNAMARVIGREDTIDRFWKLVGDMRGAGFEMEIETFVKVLGRFCKRRMIKDA VELYEFAMAGADKPTPQCCTFLLKKVVTCKELDMDLFSRVVKVFSGSGNAIPNSMVDAVLKSLTSVGRIGEWNKVLKEME DCGYVASANWQSEIAFRLGAVGEKEQANEFVNRIEAAGSDSDQEIWDSLVVGHCVAGNLDKALDSFKEMVKKEGISYAGA FDSLISSYCNMNRAIDAYKILCELVKEKELKPRHDTYKLLVSKLLAQGGFTDALNVFGLMKTHGFPPFIDPFIRHISKRG SGDDAVQFLSAMTYKKFPSTSVYLRMFEAFFKKRRPEEAQNFLSKCPRYIRNHADVLNLFCSMNSKEASSSSGMLAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 632 | 632 | 9.6E-294 | – | |
| PANTHER | 1 | 632 | 632 | 9.6E-294 | – | |
| Gene3D | 77 | 208 | 132 | 5.6E-7 | ||
| ProSiteProfiles | 129 | 163 | 35 | 9.986 | ||
| TIGRFAM | 132 | 161 | 30 | 6.4E-5 | ||
| Pfam | 132 | 160 | 29 | 3.9E-4 | ||
| Gene3D | 238 | 369 | 132 | 4.5E-13 | ||
| ProSiteProfiles | 265 | 299 | 35 | 8.002 | ||
| ProSiteProfiles | 300 | 334 | 35 | 6.917 | ||
| ProSiteProfiles | 372 | 406 | 35 | 6.314 | ||
| Gene3D | 422 | 635 | 214 | 9.0E-19 | ||
| ProSiteProfiles | 442 | 472 | 31 | 9.186 | ||
| Pfam | 445 | 472 | 28 | 7.3E-4 | ||
| TIGRFAM | 445 | 475 | 31 | 0.0017 | ||
| ProSiteProfiles | 477 | 512 | 36 | 7.794 | ||
| Pfam | 481 | 507 | 27 | 0.091 | ||
| ProSiteProfiles | 513 | 547 | 35 | 8.769 | ||
| ProSiteProfiles | 579 | 609 | 31 | 5.831 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0523400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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