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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0523900 |
Transcript ID | LotjaGi1g1v0523900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Integral membrane HRF1 family protein; TAIR: AT1G30890.1 Integral membrane HRF1 family protein; Swiss-Prot: sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A; TrEMBL-Plants: tr|G7KSU9|G7KSU9_MEDTR Integral membrane HRF1 family protein; Found in the gene: LotjaGi1g1v0523900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104897472..104901827) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATAGAAATCTTAGTCCATACGATTGTAGAACGTGGAGGCATCAAAACGGTGCGGATTTAAAACATCGTTGATCGT TCACTGTCACATCGCCTTTCTCTTTCTGCTTGTTCCACTCCATCACCATTGTTCATCTTCACCTTCACTCAGGTTCCTTT CTCTCCCAATTCCTCTCATCCCCCCTCAATTTTCTGCTAATTACATTGTTGCCTCTTCAAAATCTCACATTTTTGTTTTC CATTCCCTTTCTTTTTAGGTTATTTAACCCTATTCTGTGGTATCAAATGAAACCCACGATTTTCTTTCGCTAATTCATTT TTCTTTCTGTTTGTTTACCTGAATTAATCAAAACCCGTGTTGTTCTGTCTTTTTTAAGCATCTGATGAATTAAAAATCTG ATTTTTTTTTGTCACCATTGAATATCAAGCAAAGAGGGTTAAACAACACTATTTATTTGGTGCAAGACTGCAATGCTAGG GTTTTGGAGGGTGTAGGGTCAAAAAAACCTAGGTGGGTTGGAATTTTGAACTTGGGAGTGAAATTCCTTGCCTTTATATA CTTAGCACATTACAATTTACATCTCTGAACTGAAAAAAATGAATCTTTTGTATCAGTTGGGCTTTATTATGTCTTGGTGA AATGATTTTAACATGTGATGACTGATGAGCTGTGTTGTTAATTGTGGATGGCGGGTCATGGCGGAAAGCCAAAATCCCGC CATACATGACAAATAATGGGGGAATATTGTGTAATATAGCTGAAATGGCGGGATATCGGCCATGGCGGAAAGCCAAAAAT CCGCCATGAGAACCCGCCATGGCGCCGCGGATATTTGATATCACTGCTGATGAGAGCTTTCTTTATTAGCATTACGTTGG TTGGTCGATTTCTGCTTGTTAAAGTTGTTTCTGGTTATCATTGAGTAGTGACTGTTCTTCATCTGCGGTATTTCTTTGTC TTTATCTATTGTTTTTCATTTCCCCTAAGGCCGAATAGGAACTTCCTAGAATCTTTATAAAAGGGGAAGTTGTTTCTGAT TGATTACTTGTTTCTGATTGGCAGTAAGAATGTATAACAATGTAAGGCCGCAACTCGGGATGCCTCAATTTCAGCCGCAA CCCCCGACAAGCTCGCAACCTAATGTGCTTGGGAGTGCATTTAATACCGCTGGGGCAGGACTCATTCGAGGTGGATTGGG TGCATATGGAGAAAAAATATTTGGGTCAAGCTCTGATTACGTTCAAAGTAACGTATGTTTCATTCTATCTGTTTTTTTCA ATATTATAATGAATTATTCAACATAGCTAACAAACGACAGATAATATTGGATTTGTTTTTGTTTCTCTCTCTATCTCTGT ATGGTTGATTTCTTTTCCCCCCTTCTCATTTCTTCATTGCGATTAAATTGTATGTTGAAAAGTGCTCATTCTGAGATGAA CCTCTTTGATCTGCTGTTTTTAAGCAGTTTTGTATATATCATTGGAACTATACTTTGTTACTTATCTCTTTCTCATAATA TGTTGTATTGCACAACTTAGCGTGTTAATAATATCTAGAGTTCCCATTTAATTTTTTCCTAGACAGTATAAAACGTCCGG TAATTCAATTTTAACCCTTTCATATATGGCATATACTCTCACTTCAATAAGGCTCGCAGATCAGGCCCTACTGATTTTGG AGGGAAAAACCCAATGCAGCTAGATGATTTTAGATAGATTTTGTTATCTTGCTTACCTTTACGGCTTAACCATAGATAAT TAGATGCTTATAAAAAAAAAAAACCATAGATAATTAGATATTATTTCTGGGTGTGCCTTCAATTTTTTTTAATTAATATT CTCTTTTCAATGACAGATAAGTCGGTATTTCTCTGACCCACAGTATTACTTCCAAGTGAATGGCCACTATGTTAAGAACA AATTGAAGGTGGTTTTGTTCCCATTCCTGCACCGGGTAAGTAATAATGTCATTCTTCTCTGCGTTTATCTAACTGAATTT TCATTTTGTTATGCTTATTTTATTTTCTCGCTTGTACTCATCTTTTTCCTCTCTTGTTCAGGGTCATTGGACTAGAATTA CTGAACCCGTGGGAGGCAGACTGTCTTATAAACCACCCATTTATGACATAAATGCACCCGACCTGTACATTCCAATGATG GCATTTGGTACCTACGTTATTCTTGCTGGCATCTCATTGGGTTTTCATGGAAAGTAAGAATATCTTAATTCTATGATATA GTATTGACCTGAGTCATATTTATTTTCCTTAAATTTAAAGTTAGCGCCGTCCTACTTGTGCTTGTTGCTTGTGCATGTCT GTATATTGTGTGTCTCTGTTCTTTGTATAACAATGTTCCCCTTTTCACGAGCATTTTTTATTTATCACAGAGTTCCATAC TTTCTCGGCATGATTAGGACAACTTAAATCTACTGTTGAACAAATTTCTTGTTCATGCTAAAATATTTGTTAATAGCTAT TAGCTAATGAGAATGAGCTTTGCAAGTGACTTGAGGATCTCAGAAATGTTATCTGAAATTACGATATTCAAAACTAATTC CCGCTATCTTTGATTATGAAATGGTAAAAGAATCTATAAAAAAACTATTCTCTTCACATTGCTATGCTGTGGAGTTTATT TTCTCTGTGATGAAGAGTTGATAAAACATAAATATGAAAAGGATTGTGTCTGTGTGTGGTGGCCAACTAGCGGTGGCAAA GGGAATACAAATGGTTATCTACCTTGCGACTTGTGTGATAAAAAACATGGTACTGTATTTACAGAGTTGAATAGTGCTTA CTCTATTTGCAAGGAAAAAATTGCTATGTCAGGCTATAATTTATGGTTTCCCTTTTTCTTTGTCTGTGGTGTAGAGTTTT TTTTTGGCTTTTTAATTCAAGTCCAAAATTATTACTTTCTTGCGTTTACAACTAAAAAATATAGAAGAAACGTAATGATC TTTGTATATGATATAGAGATTGCTAGTTTTGTTTTCATGATTGTTATTTTGAAAATTTGTTAGCTGGTGTTGGCAAGTTA CTCTTACACTGAGAATTCAGTCTGTTAATACAGTACTCTTTCATTTTCCCCTATCTCACATGCTTTATAGTTTGTCATAG TTTCTTAAACATGCTGTATTTGTGGCCAGGTTTAGCCCTGAAGCTCTAAACTGGTTATTCATCAAGGGATTGATTGGTTG GGTTATGCAAACTGCACTACTTAAAGGGACATTGGTTTTATTGGGCAGTGGGGAAGCAGCTATATTGGACATGGTATCAT ATGCTGGGTATGCTTTCCCTGGCCTGTGTTTGGCTGTTCTGGGAAGAATTTTAGGGGGTTACTCCTACTACATTTTGATG CCATGGACCTGCTTATGCATGGGAGTATTCTTGGTGAAAACAATGAAGAGAGTCCTTTTCGCAGAGGTCAGGAGTTATGA TTCAAGCAAACACCACTATGTCTTGCTCTTTATTGCTCTGGCTCAGTTCCTATTCTTCACATGGCTCGGAAATATATAGA GTAAGCGATAGCTTTTACACTGTACTTAGAAGAACTTCTTAGTGATATTTTTCGGTCTTTAACATTGGATAATAGTAATA CATGGACTTTTGCTCTTCTCTTTTTTATTTTCTGAAGATCATAGATGCATAATTACAGGCCTTCTCCTTCTCCACCTATT ATTATTTTTGTTGAAAGTACCTATTACTTTTCAATATGCCTGATAGTAAATTGAAATGCCTCTATTTTCTATTCAGCTGG TTACACTTGTGATTGTGAAATCACCACAAAGTTGACATTTTTGTAGTTGTATACCGGAGTCACTCTCGATAATCCTTGTG CTGTTTGACCTATAGCATTTTGTATCTGTAGATTCTGTGCTGTATACCATTACAACGAAGAAGAAAAATCAAGTTGCAAG AGTGCCTTTAATTGTGCTCTGAGTCTAAGAACATTATCCCTTTCTATGTAAAGTTGTGATCGTAGTAGTCCAGTCCAATT ACAATGTAGATAAATGCTTGGATTGACCCTACATGATTATGCGCGCATGGTGTAGTGTTACATTATTACTATGAGGCACT CTTCCATGACAATGTAATGTGTATTTGGATACAATGCAATGTGAACAAATTTCCATTTTTTTTTAAATCTGTTCACGTAT TTTCTATTTTAAATATGTTAACTTATTTTCTCATTCTAACTAGTATGTATCAACAGAGTAAATCATTTGTTTCATTTTTC TTTTTAATCTTTCCTAAGTAACATGACATTTTTAAGTGACCACATAACTATTATTAATTTTTTATGTAGACCGTTCATGA TTCGATCTAATGGTTGTGATTTATTATCATGTTGTC
CDS sequence (LotjaGi1g1v0523900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAACAATGTAAGGCCGCAACTCGGGATGCCTCAATTTCAGCCGCAACCCCCGACAAGCTCGCAACCTAATGTGCT TGGGAGTGCATTTAATACCGCTGGGGCAGGACTCATTCGAGGTGGATTGGGTGCATATGGAGAAAAAATATTTGGGTCAA GCTCTGATTACGTTCAAAGTAACATAAGTCGGTATTTCTCTGACCCACAGTATTACTTCCAAGTGAATGGCCACTATGTT AAGAACAAATTGAAGGTGGTTTTGTTCCCATTCCTGCACCGGGGTCATTGGACTAGAATTACTGAACCCGTGGGAGGCAG ACTGTCTTATAAACCACCCATTTATGACATAAATGCACCCGACCTGTACATTCCAATGATGGCATTTGGTACCTACGTTA TTCTTGCTGGCATCTCATTGGGTTTTCATGGAAAGTTTAGCCCTGAAGCTCTAAACTGGTTATTCATCAAGGGATTGATT GGTTGGGTTATGCAAACTGCACTACTTAAAGGGACATTGGTTTTATTGGGCAGTGGGGAAGCAGCTATATTGGACATGGT ATCATATGCTGGGTATGCTTTCCCTGGCCTGTGTTTGGCTGTTCTGGGAAGAATTTTAGGGGGTTACTCCTACTACATTT TGATGCCATGGACCTGCTTATGCATGGGAGTATTCTTGGTGAAAACAATGAAGAGAGTCCTTTTCGCAGAGGTCAGGAGT TATGATTCAAGCAAACACCACTATGTCTTGCTCTTTATTGCTCTGGCTCAGTTCCTATTCTTCACATGGCTCGGAAATAT ATAG
Protein sequence (LotjaGi1g1v0523900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNNVRPQLGMPQFQPQPPTSSQPNVLGSAFNTAGAGLIRGGLGAYGEKIFGSSSDYVQSNISRYFSDPQYYFQVNGHYV KNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPMMAFGTYVILAGISLGFHGKFSPEALNWLFIKGLI GWVMQTALLKGTLVLLGSGEAAILDMVSYAGYAFPGLCLAVLGRILGGYSYYILMPWTCLCMGVFLVKTMKRVLFAEVRS YDSSKHHYVLLFIALAQFLFFTWLGNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 266 | 266 | 2.5E-153 | ||
PANTHER | 1 | 266 | 266 | 2.5E-153 | – | |
MobiDBLite | 1 | 26 | 26 | - | – | |
Phobius | 1 | 121 | 121 | - | – | |
Pfam | 45 | 264 | 220 | 5.0E-57 | ||
Phobius | 122 | 144 | 23 | - | – | |
TMHMM | 122 | 144 | 23 | - | – | |
Phobius | 145 | 149 | 5 | - | – | |
Phobius | 150 | 169 | 20 | - | – | |
TMHMM | 151 | 169 | 19 | - | – | |
Phobius | 170 | 180 | 11 | - | – | |
Phobius | 181 | 203 | 23 | - | – | |
Phobius | 204 | 208 | 5 | - | – | |
TMHMM | 205 | 227 | 23 | - | – | |
Phobius | 209 | 227 | 19 | - | – | |
Phobius | 228 | 247 | 20 | - | – | |
TMHMM | 248 | 265 | 18 | - | – | |
Phobius | 248 | 265 | 18 | - | – | |
Phobius | 266 | 267 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Expression pattern of LotjaGi1g1v0523900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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