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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0523900 |
| Transcript ID | LotjaGi1g1v0523900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integral membrane HRF1 family protein; TAIR: AT1G30890.1 Integral membrane HRF1 family protein; Swiss-Prot: sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A; TrEMBL-Plants: tr|G7KSU9|G7KSU9_MEDTR Integral membrane HRF1 family protein; Found in the gene: LotjaGi1g1v0523900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104898176..104900758) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATAACAATGTAAGGCCGCAACTCGGGATGCCTCAATTTCAGCCGCAACCCCCGACAAGCTCGCAACCTAATGTGCT TGGGAGTGCATTTAATACCGCTGGGGCAGGACTCATTCGAGGTGGATTGGGTGCATATGGAGAAAAAATATTTGGGTCAA GCTCTGATTACGTTCAAAGTAACGTATGTTTCATTCTATCTGTTTTTTTCAATATTATAATGAATTATTCAACATAGCTA ACAAACGACAGATAATATTGGATTTGTTTTTGTTTCTCTCTCTATCTCTGTATGGTTGATTTCTTTTCCCCCCTTCTCAT TTCTTCATTGCGATTAAATTGTATGTTGAAAAGTGCTCATTCTGAGATGAACCTCTTTGATCTGCTGTTTTTAAGCAGTT TTGTATATATCATTGGAACTATACTTTGTTACTTATCTCTTTCTCATAATATGTTGTATTGCACAACTTAGCGTGTTAAT AATATCTAGAGTTCCCATTTAATTTTTTCCTAGACAGTATAAAACGTCCGGTAATTCAATTTTAACCCTTTCATATATGG CATATACTCTCACTTCAATAAGGCTCGCAGATCAGGCCCTACTGATTTTGGAGGGAAAAACCCAATGCAGCTAGATGATT TTAGATAGATTTTGTTATCTTGCTTACCTTTACGGCTTAACCATAGATAATTAGATGCTTATAAAAAAAAAAAACCATAG ATAATTAGATATTATTTCTGGGTGTGCCTTCAATTTTTTTTAATTAATATTCTCTTTTCAATGACAGATAAGTCGGTATT TCTCTGACCCACAGTATTACTTCCAAGTGAATGGCCACTATGTTAAGAACAAATTGAAGGTGGTTTTGTTCCCATTCCTG CACCGGGTAAGTAATAATGTCATTCTTCTCTGCGTTTATCTAACTGAATTTTCATTTTGTTATGCTTATTTTATTTTCTC GCTTGTACTCATCTTTTTCCTCTCTTGTTCAGGGTCATTGGACTAGAATTACTGAACCCGTGGGAGGCAGACTGTCTTAT AAACCACCCATTTATGACATAAATGCACCCGACCTGTACATTCCAATGATGGCATTTGGTACCTACGTTATTCTTGCTGG CATCTCATTGGGTTTTCATGGAAAGTAAGAATATCTTAATTCTATGATATAGTATTGACCTGAGTCATATTTATTTTCCT TAAATTTAAAGTTAGCGCCGTCCTACTTGTGCTTGTTGCTTGTGCATGTCTGTATATTGTGTGTCTCTGTTCTTTGTATA ACAATGTTCCCCTTTTCACGAGCATTTTTTATTTATCACAGAGTTCCATACTTTCTCGGCATGATTAGGACAACTTAAAT CTACTGTTGAACAAATTTCTTGTTCATGCTAAAATATTTGTTAATAGCTATTAGCTAATGAGAATGAGCTTTGCAAGTGA CTTGAGGATCTCAGAAATGTTATCTGAAATTACGATATTCAAAACTAATTCCCGCTATCTTTGATTATGAAATGGTAAAA GAATCTATAAAAAAACTATTCTCTTCACATTGCTATGCTGTGGAGTTTATTTTCTCTGTGATGAAGAGTTGATAAAACAT AAATATGAAAAGGATTGTGTCTGTGTGTGGTGGCCAACTAGCGGTGGCAAAGGGAATACAAATGGTTATCTACCTTGCGA CTTGTGTGATAAAAAACATGGTACTGTATTTACAGAGTTGAATAGTGCTTACTCTATTTGCAAGGAAAAAATTGCTATGT CAGGCTATAATTTATGGTTTCCCTTTTTCTTTGTCTGTGGTGTAGAGTTTTTTTTTGGCTTTTTAATTCAAGTCCAAAAT TATTACTTTCTTGCGTTTACAACTAAAAAATATAGAAGAAACGTAATGATCTTTGTATATGATATAGAGATTGCTAGTTT TGTTTTCATGATTGTTATTTTGAAAATTTGTTAGCTGGTGTTGGCAAGTTACTCTTACACTGAGAATTCAGTCTGTTAAT ACAGTACTCTTTCATTTTCCCCTATCTCACATGCTTTATAGTTTGTCATAGTTTCTTAAACATGCTGTATTTGTGGCCAG GTTTAGCCCTGAAGCTCTAAACTGGTTATTCATCAAGGGATTGATTGGTTGGGTTATGCAAACTGCACTACTTAAAGGGA CATTGGTTTTATTGGGCAGTGGGGAAGCAGCTATATTGGACATGGTATCATATGCTGGGTATGCTTTCCCTGGCCTGTGT TTGGCTGTTCTGGGAAGAATTTTAGGGGGTTACTCCTACTACATTTTGATGCCATGGACCTGCTTATGCATGGGAGTATT CTTGGTGAAAACAATGAAGAGAGTCCTTTTCGCAGAGGTCAGGAGTTATGATTCAAGCAAACACCACTATGTCTTGCTCT TTATTGCTCTGGCTCAGTTCCTATTCTTCACATGGCTCGGAAATATATAGAGTAAGCGATAGCTTTTACACTGTACTTAG AAGAACTTCTTAGTGATATTTTTCGGTCTTTAACATTGGATAATAGTAATACATGGACTTTTGCTCTTCTCTTTTTTATT TTCTGAAGATCATAGATGCATAA
CDS sequence (LotjaGi1g1v0523900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAACAATGTAAGGCCGCAACTCGGGATGCCTCAATTTCAGCCGCAACCCCCGACAAGCTCGCAACCTAATGTGCT TGGGAGTGCATTTAATACCGCTGGGGCAGGACTCATTCGAGGTGGATTGGGTGCATATGGAGAAAAAATATTTGGGTCAA GCTCTGATTACGTTCAAAGTAACATAAGTCGGTATTTCTCTGACCCACAGTATTACTTCCAAGTGAATGGCCACTATGTT AAGAACAAATTGAAGGTGGTTTTGTTCCCATTCCTGCACCGGGGTCATTGGACTAGAATTACTGAACCCGTGGGAGGCAG ACTGTCTTATAAACCACCCATTTATGACATAAATGCACCCGACCTGTACATTCCAATGATGGCATTTGGTACCTACGTTA TTCTTGCTGGCATCTCATTGGGTTTTCATGGAAAGTTTAGCCCTGAAGCTCTAAACTGGTTATTCATCAAGGGATTGATT GGTTGGGTTATGCAAACTGCACTACTTAAAGGGACATTGGTTTTATTGGGCAGTGGGGAAGCAGCTATATTGGACATGGT ATCATATGCTGGGTATGCTTTCCCTGGCCTGTGTTTGGCTGTTCTGGGAAGAATTTTAGGGGGTTACTCCTACTACATTT TGATGCCATGGACCTGCTTATGCATGGGAGTATTCTTGGTGAAAACAATGAAGAGAGTCCTTTTCGCAGAGGTCAGGAGT TATGATTCAAGCAAACACCACTATGTCTTGCTCTTTATTGCTCTGGCTCAGTTCCTATTCTTCACATGGCTCGGAAATAT ATAG
Protein sequence (LotjaGi1g1v0523900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNNVRPQLGMPQFQPQPPTSSQPNVLGSAFNTAGAGLIRGGLGAYGEKIFGSSSDYVQSNISRYFSDPQYYFQVNGHYV KNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPMMAFGTYVILAGISLGFHGKFSPEALNWLFIKGLI GWVMQTALLKGTLVLLGSGEAAILDMVSYAGYAFPGLCLAVLGRILGGYSYYILMPWTCLCMGVFLVKTMKRVLFAEVRS YDSSKHHYVLLFIALAQFLFFTWLGNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 2.5E-153 | ||
| PANTHER | 1 | 266 | 266 | 2.5E-153 | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 121 | 121 | - | – | |
| Pfam | 45 | 264 | 220 | 5.0E-57 | ||
| Phobius | 122 | 144 | 23 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 145 | 149 | 5 | - | – | |
| Phobius | 150 | 169 | 20 | - | – | |
| TMHMM | 151 | 169 | 19 | - | – | |
| Phobius | 170 | 180 | 11 | - | – | |
| Phobius | 181 | 203 | 23 | - | – | |
| Phobius | 204 | 208 | 5 | - | – | |
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 209 | 227 | 19 | - | – | |
| Phobius | 228 | 247 | 20 | - | – | |
| TMHMM | 248 | 265 | 18 | - | – | |
| Phobius | 248 | 265 | 18 | - | – | |
| Phobius | 266 | 267 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Expression pattern of LotjaGi1g1v0523900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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