Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0524000 |
| Transcript ID | LotjaGi1g1v0524000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase III subunit RPC6; TAIR: AT5G23710.1 DNA binding / DNA-directed RNA polymerase; Swiss-Prot: sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III subunit rpc6; TrEMBL-Plants: tr|I3SJX0|I3SJX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0524000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104902965..104905105) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAGACCCACCGTACAATTAACATCAGAAAGAAAAAGGCAGCTATGTTGTATTGGGCTTTTGCTTTGTTTTCGGACCA GTCCAAGAAATCAGTGATATAAATTTGACCCCTAAAAATATAATAAGGTCTAAAACGAGCATTGTGTGAAGCTTCGAACG TTTCCAGTGGTGGTTTGTGTCAAAGAAGAATCAAAGAACGACAACGAGGAAGAAGAGACCGGAATAGAGTTGATTGTGTC GGAGAACCGAACGTCACATCGTTTATTTCTCACTGAACCAGGTATAATCAAACCAAACCATCTTAACCTTAATTTCATGC TTTAATCTCTGCGTTTGCTTTGATTTCTATGCACGCACGCTAGGTGTTTGATGAAATTACTGCCTCATAGGTATCCCTGT TTTTGATTGTTGAGAGTGTCGGAGTCTAGGTGGTGATGGGTTTATCAAATTGAGATGCAGCCTTTTGTGCTTGTTTATCA AGAGTAGTGACATATATGATATTTTGAATGGGAGATTAGCCCAATATGTCAGGTTACACATTCTTTGTACGAGAGGTATC CGATTCGTAGATTCGATATTTTGCGAGTGTAGTTTATCTATGTTCACTGTGTGGATGAAATCCCTTACCTAAAAGCCCTG CATCACTTGCTAACTTGTTTTATTTTCTGTTCAATGAACACCTTGTATTGATTCTGATCTGACTTGGAAAGGATCAGTTG CTTGCTTCATTTCAATTCTATGCTTCTGCATGTGTTCAGGTTTTCAACTTAATATGCTTGAATAGAAGCTAAGCTAGAAT CCTAGTAGCAAATGAAAGTTCTGGAGGTCTGGTCATTATGTGTCTTCTTTGTGTATTGAGTGCAAGATTATGTGATAGCT CTTATTGCTGTCACATTTTCTTCTTGATAGTAGTGTAATTAAAGTATTTTTGCTGTATGCAAGTTATACTCATTTACTTT TTTCACTATCATGTTTAAACTGTAAATTACTTTCAGCTTTCAAATAACCGTTTGAGTGATTACTTACATTGTACTTGGCA TTTTTCTCTTGAAAGAAATGAGTCGCCTACCAGGATCTTCTTCCCTTAAACGGAAACGACCAGATTTGACAGACGGGGAG GATGTAGTCTATAAACTCATTCATAGCAAGGAAAACATGGGGATTTGGATAGCTGACATTAAGCGAGAAACAAAGATGTC GGACAATATGGTCAAAAAATGCATTAAGTCGCTTCAAGACAAGAATCTTGTAAAGGAGGTTGTTAACATCCAAAGCAGAG GAAAGAAGCACTACATGGCAGTAGATTTTGAACCTTCCAAGGAACTCACTGGTGGGGATTGGTATACCGATGGGAAATTT GATACAGATTTCATAAACGCTGCAAAGGATGTGTTCTTGAAGTATGTTTTCAAGCAGAAAGTGGCTACTTGTGATGGAGT TTTGGAGTGGACCAGAAAGAACGCGGTCTTCAGTGTTGATGTCACAGCGCAGCAAGTAGAGGAGATTTTGCGAGCCTTGG TTTTGGATGATGAGATCATAGAGGTGGAGAGCACTGGAAAGGAGGAATTTGCATCTGTTCCTAAAGGCAAAATCTGTTAC AAAAGCAAAGGCGGCGTTAGAGGGGAGAAGAAAGCTGGTGCCATGGCCTCCATTCCTTGCGGTGTTTGTCCGAGAATCAT CAAATGCGCACCAGATGCAGATGGCTTTATCTCCCCAAGAACTTGTGACTATTTTGAGAAATGGTTAGACTTCTAAATGA GTCTAATGCCAATTTGTTAGTGAAGACTGCAACTATTTTGTATTTATTTGACTTATATTATTCAATTTATCAAAGATCCC TCTGCATTAAAATGAAAGCTTTCAATTTGAATTGACTCAATTATTTCAATAGTTTCACATAAGGATCACACAGGTTGAAG GTTTTTTTCAGTAATACGGGTTGGTGCTCATCCTTGTCAGAGTAACCTTTTCTTTGTACAATCATTTTGTGAATCTATTT GCCAACCTTATGCGTATTCAACCTGTTAGTCAAGTGGATTGAAGATTTATGCTTAAATTGTCTCAGTTTTTCCTGCATCG GCTTAAGGAATGAGTGAGAGTATTATTCACCACATTCATAAGCCAATAATATTGCGCCAGG
CDS sequence (LotjaGi1g1v0524000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCGCCTACCAGGATCTTCTTCCCTTAAACGGAAACGACCAGATTTGACAGACGGGGAGGATGTAGTCTATAAACT CATTCATAGCAAGGAAAACATGGGGATTTGGATAGCTGACATTAAGCGAGAAACAAAGATGTCGGACAATATGGTCAAAA AATGCATTAAGTCGCTTCAAGACAAGAATCTTGTAAAGGAGGTTGTTAACATCCAAAGCAGAGGAAAGAAGCACTACATG GCAGTAGATTTTGAACCTTCCAAGGAACTCACTGGTGGGGATTGGTATACCGATGGGAAATTTGATACAGATTTCATAAA CGCTGCAAAGGATGTGTTCTTGAAGTATGTTTTCAAGCAGAAAGTGGCTACTTGTGATGGAGTTTTGGAGTGGACCAGAA AGAACGCGGTCTTCAGTGTTGATGTCACAGCGCAGCAAGTAGAGGAGATTTTGCGAGCCTTGGTTTTGGATGATGAGATC ATAGAGGTGGAGAGCACTGGAAAGGAGGAATTTGCATCTGTTCCTAAAGGCAAAATCTGTTACAAAAGCAAAGGCGGCGT TAGAGGGGAGAAGAAAGCTGGTGCCATGGCCTCCATTCCTTGCGGTGTTTGTCCGAGAATCATCAAATGCGCACCAGATG CAGATGGCTTTATCTCCCCAAGAACTTGTGACTATTTTGAGAAATGGTTAGACTTCTAA
Protein sequence (LotjaGi1g1v0524000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRLPGSSSLKRKRPDLTDGEDVVYKLIHSKENMGIWIADIKRETKMSDNMVKKCIKSLQDKNLVKEVVNIQSRGKKHYM AVDFEPSKELTGGDWYTDGKFDTDFINAAKDVFLKYVFKQKVATCDGVLEWTRKNAVFSVDVTAQQVEEILRALVLDDEI IEVESTGKEEFASVPKGKICYKSKGGVRGEKKAGAMASIPCGVCPRIIKCAPDADGFISPRTCDYFEKWLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 6 | 232 | 227 | 1.5E-54 | ||
| SUPERFAMILY | 11 | 83 | 73 | 2.38E-17 | ||
| PANTHER | 13 | 232 | 220 | 4.1E-73 | ||
| Pfam | 15 | 120 | 106 | 8.0E-33 | ||
| Gene3D | 19 | 83 | 65 | 2.2E-20 | ||
| Pfam | 121 | 231 | 111 | 2.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | RNA polymerase III complex | RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. | ||
| Biological process | Transcription by RNA polymerase III | The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. |
Expression pattern of LotjaGi1g1v0524000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…