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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0527700 |
| Transcript ID | LotjaGi1g1v0527700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G13330.1 related to AP2 6l; Swiss-Prot: sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113; TrEMBL-Plants: tr|I3SZ77|I3SZ77_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0527700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105454476..105457211) extracted from Lotus japonicus Gifu genome v1.2.
GAGACTCAATCAAAGTTAATAAAAAGAAATTTGTGAAAAAGAGCAGACCTTAAATTTAATGAAGAATCATGAGTCGACTT TTTTATAGCATGGTTTTCAGTTGTTAAATTTCCCATGTATAAGTGGGTTCTATACCAGCACTACTATGACCACAAGATCA TAGTACTAACCTTCCTTAACATATATAGTAGAACAACAAAAACAAAAAAGTGGATCCTAGAAGGGATGGAAAGTTTGCAC TATATTCAGAAGCATCAGAGGCGAAAGAGGAGGATGAGTTGTTTGATGCTTATAATTATGCATCTTCAGACACTGACATG TCTGCAATGGTTTCAGCTCTTGCTCAAGTCATGGGAACTACCAATCCGAACCAACACATGGTACAATCAACCTCCTTTCC TGTCTCAACCATGGTCAATGAAGAACCTCAGCCCCAACCTCTTCTAGATCAAGGTTTGCTTGCAATATAATATAGTAGTA TTATTCATTCTTATATAAATTAAACTCTAAAATTGGTGTGTTTTGTTTCTACTTTTGTTTCTTGATTTTACCTCAATTTA GCATGTTTAATTTTCCTAAAAAAGACAAATTAAATTATCTTTATGAAAAACTTCTATAGTTTTTTTATTTCCAAAAAGAA CTTTTAATTGATCTTTATAGGAAAATTGAAATATAGGTAAATGATTTGTTGACATATAGTGCAAACATTGAACACACATC GAGAATGTGAAGAAAGATTAGAGAGAAAATTAATGGATGTGATATATAATAGAAGATAGAGATGATGAGAAAATAATGCC TATTGAGTGTCTACTACGGGTGGAAATGGGCTAGGCTAGGCTTTGAGAGGTCTAGCCCAAGCATGCATTCAGAACTCGCG ACCCAAGTCTTGAATGTGGCATTTCGTAGGCTAAATTTTAAGGTTCGGGTCTGGCCTTCTACGAGCAATGGCTTGACCTA TATGAGCCTCTTCGAAAACCAACTTACCTAATAATATCCTCTTAAAGAGGCTAATAGGCTAATAGGCCTTAGGGTTAAAG GTAGCGGAAGTCTTTACACCTATCATTGCATTTATATTTTCAATTTATATACAAACACAAACTGGATGTTGCCACCACAT TGAATCTAAATTAAAACTAAACTTCAAAGACAACATGTTTGATACAAGGTAAATGGCCCGGCCTATCAGGCCTAATAGGC TTTTTTGTAAGCCTAGACCTATATCTTTTTAGCTAATCAAGCTTTTTAAAAAGTCTAAGCCTAGACTTGTCTAAGACTAG ACTTTTTAGCAAATAAACTCGGCCTAGGCCCGATCTTTGGTAGGCTAGGTCATAGGCCCCCGACGAGCCGTCCGACCTAT TTTCACCCCTGTTGTCTACATCTACATTATTTGTAATATGAGTAAATAAAAATAAGTTCCATTAGTTTATTCTAATTTAT GTAACAATTTTTTTGGCATTAATGAGAGAAAAAGATTGGCTGACACCCTTTTGCGCAGGATACAATCAACCTGGAGTATA TGGAGTTTAATAAAAATAATAAACTTTGCATTTTGTGAACGTTAAAACCGTCATAAATTACCGGTGTTAATGATGCCTAT TGCGATCCATTAATGAATGACCACAAAAGGATAAATTCATTTCATTCCAAAGATACATATAAAGGCGATTCTATGGTGTA CCATATTAAAATTTGGTCCTCCATTAACCATATTTTTACTTGTTATGAAATATTATATTAATCGTAAAAAATACATTATA TATTATTTGCAATCCTTCTTTTGTATTAAAACATAGTCACAATGTATGCATGTGTTGATAAATAAAGAGATCACAAAGAA ACCAAGGTACAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCAGAAATCCGTGATCCAAAAAAAGCTGCTAGAG TCTGGCTAGGAACCTTTGAAACAGCAGAGGATGCAGCCACTGCATATGACAAAGCTGCACTCAAGTTCAGAGGCACAAAA GCCAAGCTTAATTTCCCTGAAAGAATTCAAGGGAACACTGATGCTAGCTATGTGGTACAACAAGGTTCAGGAAGCAGAAA TGTTATTTATACTAATGATGCAACAACTAGTGCTAGTAGTGCCATAATTCAACATGCACATGCTCATGATATTAATGCTC TTCCTCCTTCATTGTCCACTACAAATGAACATGATCACCAAGTTTTCCCAAACCTGTTTCAGTATGCTCAGATTCTTTCA AGTGATGATGCTGAACTACCTTATTACACATCCCATCTTTTCAATCAACAACAACTGCCTTTTAGTTCTCAGTTTTCTAC CAATTTGTCTTCAACTTCATCTCCCTCATCCTACTTCTACAACCAGCAGCAACAACAACATGATGAAGAAGGAGATGATG TCACCATGAGCAGTAGTATGTAAAACTTTTTAGTTTTGGTATAGAAATGAGTCAAGTTTTATGTCTCTTAATTACTTAAG CTGGCACAAGTCATGGATCTTACAATTCATTTCAGATTTAATTATGAGTAATGTCATGACTCATTTTTAATCATATCAGG AGCTAGGGACATTATGTATTCAGTGAAGAGAGAAAAAATGTCATTTTCCATTGCAATATTAATTTGAAGTTAATATTTAA GGACTTTCTTCAATGGGGTCCAAAAATTCAGATGTCTACGTTAAAGAATTTTTGTTTTTCTGGTTGTAAATTTCAAAACT AGTATGAGAAGAATCA
CDS sequence (LotjaGi1g1v0527700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTCATGGGAACTACCAATCCGAACCAACACATGGTACAATCAACCTCCTT TCCTGTCTCAACCATGGTCAATGAAGAACCTCAGCCCCAACCTCTTCTAGATCAAGAGATCACAAAGAAACCAAGGTACA GGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCAGAAATCCGTGATCCAAAAAAAGCTGCTAGAGTCTGGCTAGGA ACCTTTGAAACAGCAGAGGATGCAGCCACTGCATATGACAAAGCTGCACTCAAGTTCAGAGGCACAAAAGCCAAGCTTAA TTTCCCTGAAAGAATTCAAGGGAACACTGATGCTAGCTATGTGGTACAACAAGGTTCAGGAAGCAGAAATGTTATTTATA CTAATGATGCAACAACTAGTGCTAGTAGTGCCATAATTCAACATGCACATGCTCATGATATTAATGCTCTTCCTCCTTCA TTGTCCACTACAAATGAACATGATCACCAAGTTTTCCCAAACCTGTTTCAGTATGCTCAGATTCTTTCAAGTGATGATGC TGAACTACCTTATTACACATCCCATCTTTTCAATCAACAACAACTGCCTTTTAGTTCTCAGTTTTCTACCAATTTGTCTT CAACTTCATCTCCCTCATCCTACTTCTACAACCAGCAGCAACAACAACATGATGAAGAAGGAGATGATGTCACCATGAGC AGTAGTATGTAA
Protein sequence (LotjaGi1g1v0527700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAMVSALAQVMGTTNPNQHMVQSTSFPVSTMVNEEPQPQPLLDQEITKKPRYRGVRQRPWGKWAAEIRDPKKAARVWLG TFETAEDAATAYDKAALKFRGTKAKLNFPERIQGNTDASYVVQQGSGSRNVIYTNDATTSASSAIIQHAHAHDINALPPS LSTTNEHDHQVFPNLFQYAQILSSDDAELPYYTSHLFNQQQLPFSSQFSTNLSSTSSPSSYFYNQQQQQHDEEGDDVTMS SSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 233 | 233 | 4.3E-97 | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 1 | 233 | 233 | 4.3E-97 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 13 | 4 | - | – | |
| Phobius | 14 | 243 | 230 | - | – | |
| Pfam | 51 | 101 | 51 | 2.8E-13 | ||
| CDD | 51 | 110 | 60 | 9.13766E-37 | ||
| Gene3D | 51 | 112 | 62 | 9.1E-32 | ||
| ProSiteProfiles | 52 | 109 | 58 | 25.277 | ||
| SMART | 52 | 115 | 64 | 2.0E-37 | ||
| SUPERFAMILY | 52 | 110 | 59 | 5.69E-23 | ||
| PRINTS | 53 | 64 | 12 | 1.1E-11 | ||
| PRINTS | 75 | 91 | 17 | 1.1E-11 | ||
| MobiDBLite | 217 | 243 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0527700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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