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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0529300 |
Transcript ID | LotjaGi1g1v0529300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G48800.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q24009|BICC_DROME Protein bicaudal C; TrEMBL-Plants: tr|I1KWR9|I1KWR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105586183..105588916) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAAGACTCTTCATTGGTTTTGATGTTCCATGATAGCTTAGCTAGATAATTAAATTAAATTAATGGAATAAAAAAATA ATCAAGATTCAAGATCTACAACACCGATTTACACGTGGCGCACAGATCCATTCAATTACTTGTACGGAATCTACTTGAAC TTCTCATCAATCTCCATCCTACGGTTGACAACGTTACGAAGGTGCATCGCATTTGCGCCCCACCGCACCGGAATATTCCC CACCTCCCTTTTCCTGCGCACATCGCTACTTCCACTGTAACCGCAATGGCGGCTGAGCCCGAGACGCACCCACCGCCGCT GGAACCTCCAATCACCTCCGTCCCAGAAACTGCGCCGGAAACATCGGCGGCACCGGAAACCACAGCGCAGCCAAGCCCCG CCGCCGCCGGCCCTCCTCGGAAGCGGCAACGCCGTCCGAGCGTCCGTTTGGGTGAGATCGGCGATCAACGTGCTACCGGA CACGGCAATGACTCCCACCACACGCGCCGCCCGACCATACCGCCATGGAGCTGGCGAATCCCGAGGGAGCCTTCACGAGC CGCATCCAAGGCCCGCTCCGCAACGAACCCCGTGAACGGCGGTGAAGAATTTGGAAACAGCAACAGCCGAAGGGGCAAAG CGAAGCGAGGATCAACGACGAAGCGGTTGAGGTCCGAATTTGCTTCTAGAACAATCGACGAGAATTTCGACGACGATCAC GCGAGCCCGGTGCATTCGGTTGAGGAGAACGGACTCGATTGTTGGAACGTGGATCGGAGCGAGGATCATAGGGTTAGGGT TTCGGATGGCGTTGAATCGGAATCGAGGGAGCGGAGGAAGAACGAGGGAGTGAGGTCTTGGTTGTTTGAGTTAGGGTTGA GTAGGTATGCTCCTATGTTTGAGATTCATGAGGTGGATGATGAGCTTCTTCCAATGTTGACCTTGGAGGATCTCAAGGAT ATGGGTATAAATGCTGTTGGTTCCAGAAGGAAAATGTACACTGCAATTCAGAAGCTTCAGAAAGGGTTCCCATGAATCTA TGTTATGTATGTATGTATGTATGTACAATGTATGTATGTATGTATATGTGTTGTGTAGTACTAGTTACTAGTTAGTTTTC TTCAGTTTCCTTGTTCTGTGGCTTGAAACTTGTGGATAGAAAAATGCATGCATGTATAAGAGTTTTGTTTTTTTTATCCT CTAGTGACTTGGTGCGTGTTTTGGAAATCGTTCTACAATTGATTCCAAAGCCGAAGTCAATTCTGAGGAGAAGCTTCCGT GAGTGGCTTCTGTGTTTCAGAATTGATTATGAGGAATCAGAAACTGATGCAAACATATGCTATTAACAATAGTGAATTTT GATCATTAAGCATGGAAGAGTGATGGTTAAGCAATGATGCACAAGTTAATTCTGCAACTCTTTTATGTTTTTTCTCTATT TTTGTAATTCTGGAAATCTTTCATGTTTATTGTGGACAAGTTAATGCTCATGAAGCTTCTGGTTAAGCTGAAGAGTGATG TGTTTCATTGAGACAATTTTATGGAATCATGATTTGAGAAATGTCTAGTGTTATTATACTACTTTAATGCTGTTACTTTC CAGTTTCCACTGAATGTTTGTTAAAAAAATGGCTCTTACTTTTCCTCTGCTTGCCTTTTAACTTATGAGCATTGAGTGTC TTGGAGCCAAACATACTGAATTGCCCGTTGACTAAACTGGCTTTTTATGGATCATGTAGAATGAGATCTCATTTCGGATA TCATATCAGCCATTTTTTGATCTCATAGACTCCTGTTTTACGGGCTGATAGAATTCTGTTTCTGTATTCTGATTAACCTT TCAGATGCTTGATCTGTACTCTAATTACTTTGGCACTGCAATGGGAATATTCTCTCTTTCTTCTGGAATAATGAACAGAT AATTAGAGTCAGATATAAAGCTGTGCTTACAGTTTATACTGAGTGATAAAATTTCCAAGTCTTGTAGACACTCAATATGC TAATATTCTGCATTCAAAGTGACCACAACAGTCTTAAAATATGCGGTAGCGGAGAAGGCATCTTGTCTTCTCACTGTACT CACATGTTTATAAAATTGAAGTGCTGGATGGAATATGATCCCTATATTACTTATGGTTCATCTTTCAGCAGTTTGATCCT TAGTTTGTAACTTTGCCACTAATATATGGGGATAGTACTGAGAATATTTTTTCTCATTTCCTAATATGTTGTTGTAAATC TTGGTTATGCTTTTATTTTGTTTATCCTAGGTTTCTGATTGAGACATATGAGTAGGACCATCTGTTAATGAAGGCAAAAT GGTTGCTTTCACTTGAAGTCCTCTTGATTGATGTTCTGTCCTGCTGACCGGCTTAGTTTGTTTTTGAAATAAACAATGAA TAGGAAACTATGAATATATAGTTCAATTGACTGCCCCATTTGTCTGAGCTGCAAAGTGAGATTTCATATGGAAAAATTCT TTTCTAGGTCTAATCTACCTCACCAGGAATACACTAAACCAGTGCCACTGCCACAATGCCACTCCAGGTGCTTCATTGCT TCAATCAAATGTGGATAAAGGAGAAGTCCTAGTGCATGTTTAGAAATTCTTGCAAAATTAATTATGAGAATATGCTCCTT GAGAGTGGCCTCTAGATGTTAGAATTGATTATTAGAAAAAAAAAGCTGATCTAAACATACTATAAGTAAGACCAGTTGGA CTACCAGCTTTTAG
CDS sequence (LotjaGi1g1v0529300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTGAGCCCGAGACGCACCCACCGCCGCTGGAACCTCCAATCACCTCCGTCCCAGAAACTGCGCCGGAAACATC GGCGGCACCGGAAACCACAGCGCAGCCAAGCCCCGCCGCCGCCGGCCCTCCTCGGAAGCGGCAACGCCGTCCGAGCGTCC GTTTGGGTGAGATCGGCGATCAACGTGCTACCGGACACGGCAATGACTCCCACCACACGCGCCGCCCGACCATACCGCCA TGGAGCTGGCGAATCCCGAGGGAGCCTTCACGAGCCGCATCCAAGGCCCGCTCCGCAACGAACCCCGTGAACGGCGGTGA AGAATTTGGAAACAGCAACAGCCGAAGGGGCAAAGCGAAGCGAGGATCAACGACGAAGCGGTTGAGGTCCGAATTTGCTT CTAGAACAATCGACGAGAATTTCGACGACGATCACGCGAGCCCGGTGCATTCGGTTGAGGAGAACGGACTCGATTGTTGG AACGTGGATCGGAGCGAGGATCATAGGGTTAGGGTTTCGGATGGCGTTGAATCGGAATCGAGGGAGCGGAGGAAGAACGA GGGAGTGAGGTCTTGGTTGTTTGAGTTAGGGTTGAGTAGGTATGCTCCTATGTTTGAGATTCATGAGGTGGATGATGAGC TTCTTCCAATGTTGACCTTGGAGGATCTCAAGGATATGGGTATAAATGCTGTTGGTTCCAGAAGGAAAATGTACACTGCA ATTCAGAAGCTTCAGAAAGGGTTCCCATGA
Protein sequence (LotjaGi1g1v0529300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAEPETHPPPLEPPITSVPETAPETSAAPETTAQPSPAAAGPPRKRQRRPSVRLGEIGDQRATGHGNDSHHTRRPTIPP WSWRIPREPSRAASKARSATNPVNGGEEFGNSNSRRGKAKRGSTTKRLRSEFASRTIDENFDDDHASPVHSVEENGLDCW NVDRSEDHRVRVSDGVESESRERRKNEGVRSWLFELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTA IQKLQKGFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 129 | 129 | - | – | |
MobiDBLite | 20 | 34 | 15 | - | – | |
PANTHER | 37 | 99 | 63 | 3.8E-50 | – | |
PANTHER | 37 | 99 | 63 | 3.8E-50 | – | |
MobiDBLite | 94 | 111 | 18 | - | – | |
PANTHER | 167 | 248 | 82 | 3.8E-50 | – | |
PANTHER | 167 | 248 | 82 | 3.8E-50 | – | |
SMART | 181 | 247 | 67 | 8.1E-13 | ||
ProSiteProfiles | 184 | 247 | 64 | 15.826 | ||
Pfam | 186 | 245 | 60 | 1.2E-14 | ||
SUPERFAMILY | 187 | 245 | 59 | 1.92E-16 | ||
CDD | 189 | 243 | 55 | 2.06767E-17 | – | |
Gene3D | 189 | 246 | 58 | 3.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0529300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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