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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0530200 |
| Transcript ID | LotjaGi1g1v0530200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase, putative; TAIR: AT1G05850.1 Chitinase family protein; Swiss-Prot: sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1; TrEMBL-Plants: tr|I3S1Z0|I3S1Z0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0530200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105733029..105737829) extracted from Lotus japonicus Gifu genome v1.2.
TAGTGTATAATTATTATTATATTCTTCAAATTTATAAATATAAGGGCAGAATATGTCATTTGACAGACCATAGCTGTCGG TGGTACCTTCCCTCAAAGCCAGTCTGTTCTCATCTAAACATCGAACACTTTCCCCACAATAAACCTTATACGCATCGTCG GTCACCTATAAACCGTTCGACATATAATCACTTGTGACACTCACGCTTCGCTTCTATTTGATTCTTCCATTTCTCTCTTT CTTCTTCACCATTTCATTCTTCATTCCCACGCACCAGAGATGACGTCGGCGAAACGCACCGCCGTCGTGTTCCTCACCAC ACTCGTCATCTTCCTCGCCGTGTCCTCCACCGTGGAAGGGGATGACAACACGAAGACACTGGTGAAGTACAAGCACGGGA AGAAGTACTGTGACAAAGGCTGGGAATGCAAGGGCTGGTCCATCTACTGTTGCAACTTGACCATCTCCGATTACTTCCAG GTCTACCAGTTCGAGAATCTCTTCTCCAAGAGGAACACGCCGGTGGCTAACGCTGTTGGATTCTGGGACTACCACTCATT CATCACCGCTGCTGCTCTTTTTGAGCCTCAGGGCTTCGGTACCACCGGGAATAAGACGCTTCAGATGATGGAGATCGCTG CTTTCCTTGGACACGTCGGCGCCAAGACCTCTTGTACTTCCTCGCTTTCATCTTACTTGATTTATTTTTGTGGATTGATT GAATTGAATGTGTGTTTGATTTTTTGTTGAATTCTCAATCTGCATTGAGCTAACTCTGCAAAATTTTACTTCTCCATTTG TGCATTTGGGATCTGCAATCTGAGAAACAAGCATGCAATTATGTTTTGTTATGTGTTGAGGCAAAAATAGAAAGTTATAG TTTTTCTTCTAATGAGTTAAGTAAGGGTTAGTGGGGTGATGTTTATCTGGGTTAACTTAAGTGGGCAATTTTGTAGAAGA TCTGGATCTCTAGTGTTTGGAATTTTGAACGAGTCGGGTCAGTGTTGTATGATTTAATTGGTCTGCATTTAGCCTTGATT TGCTTGTTACTTGTCTCTGATCTCGTGTAGTTCTGCGATTAAATTTTATACTTTGAGCTTGATTTTGCTGGAGTGCACGT TTGTTGTGAGGTGTTCGGTGCTATGGTGTTCAATGAACTTGCATTTGGAGATGTGGGTGGGTGTCATGTTAATTTACTTT CTTCGAATGTGTGTCAAGTTACTTTAGATGTAAGGAAGAATAGTTGAGTAATTCTTCAAGCGAGATGAATAAGGGTTAAT GGGTGTTTTTTTAGTGTGGGTTAGTTTTTTTTTTGATACATCGGAAAGATAAATTACACCCTCCAGGGATTGATCCCTAG ACCTTCCCCTCTCCAACCCACATGTCCCCCCAGCTCTTACCACTTGAGCTATCCTTCGGGGAGGGTGGATTAGTGTATTG AAAAAAAAACAATTATGATTATTTATTTTTGCATTCTTTTAGTTATAATGTAGAAGATGTGTGAACTTTGAAAAAATTGG ATCATTGTTGTCTAGTTTGATTGGTCTGCTGTAAACTTCGATGCGTGTCTGTCTTTTTGGTTTAGATTGTAAGAAAAGAG AAAGTGATGAAACTATAGGGTTGTAATTACATTCTTTAGAAGTGTAATGAAAAAGATCTGGATCTATAATGGTTGAAACT TTGGTTGAAAAGATCTTTGAACTTGGATTTGTTTCCTTCTTTTGTAGTTAGGTTGAGTAAAATATATAAAGAGATAATGC TCCAACAGATCATTTTTGTAGTGTTCTTCTTAAATTATGCAAAAGGAGAGAACATGAGTTTTTTGTTTTGATTTATGGTT GACATGGCATCTGACATCTTCGCCTGCATTTCACAAGATAAGAACATGTTTTGGTGAAATTCCATTCATCAGAGACATCT GACTTAGATCTATCATTTATGTTGCATATATTGATGTGTTTGATTCGGTTGTGCTTTAATTTGGACAACTTTGATGGTGA TCATTCTTATAATGCTTATGCCAGGTGGTTATGGAGTGGCAACCGGAGGACCTTTGGCCTGGGGTCTTTGTTACAACCAT GAAATGAGTCCTAGTCAGAAATATTGTGATGAATATTACAAATTAACGTACCCCTGTACTCCTGGTGCTGATTATTATGG ACGTGGGGCCATTCCTATTTACTGGTATGCATATGTTTAGCGCTACTGATAATTGAAGCCTATTTTCCTCTTCTAGATAT CCCCACTTTGCCAAAATGCCGCTGGTCAATAAAATCTCAAACTTGTCATTTTAAGGTTTCCCTGATATTCCCGAAGGCCC GAACAAACAGTGTAGCAAATTAATCAGACCCATCAATGGGTTGACTCACCCGACAAGATTTTGTTTATTAGTAAGAGCAT TCTCTCTCTAGGAGTGAAAATGGACAGTAGTTAGGTTCTAGTGCTCTCACCAAGACACCAATTAATTCTGATTCATCAGT CATCCTAAGCACCTCAATAACCATGATCATCAAGCTCAATTTGGCAAAGAAGTTATGTCTTGAACTGTCTTTCACATGTA AATGACACATCTATCACATGTAACTTCTAGATGTGAAAGCCTTCAAAATATTATTAGCAGCCCAGCGTGGCAATTATAGG TCTTTCAAATCATCATCAAGAAAAATAGGAATTAATTGAGCATTGCAAAGTTTTGAAAGATTAGTATAAATAATACAGAA CCTGTTGCAATAAGGATGAAGTAGAAAAGGGAAAGGCAAAATAGAAAGACAAAATAGAGTAATCAATTGGTTATAGAGAG ATAGAGAGCTGATTGCTGGGTTTGTGTAGATGATATTATCATTAATACCAATAAAAAATGTAAATATAATTTATGCATGT ACAGGTTTTCTATAACACCAGCCAAATCTTGAACCTGTTCCCAGACTTTTCATGGCTCTGACATTTAGATATATATATAT GTGTGTGTGTGTGTGTGTGCAAGCTGTTGTTTGATCTGGATGGGTAGGATATTTGACCATATTAGTAAAATAGCAATCCA TGATCATATAAGTAGCTTGTGCGTCGAAATCAAGGGTTTATTGGAGCTTTTTTAATTTGAAATGTAGAATAGGCAATCTG AAAAATATTTACTGGGTTTTATCCATATCTTGATAAAATAGCAAGGTTTGCGACTGACTTGTGTGTTTGAGTATGTATCA CAGCAAATATTTTAATATGAGGATGTATCATGTGGGAATGTCTTTTTATGTGAGAATTGTAGTAATAAATCATGGCTGTT AGATCTAAATATGAATGGTCAAGATTAAAAGTTATTTAATTGTCACAACTCACGAGTCACGTGATCACTTAAAAATGTCG TGACTTCTGAGAAAAGTCACATGGTGTGATGTGTTAACTTTGACCATTTGATCCAACGGTTATGATTTATTCCTACCATT CTTGCATAAGAAAACACTTCTCAAATGATTATCACTCTGATTGTTGAATGCGTAAGTTGTACTTATTGGTGTACTGTGAA TGCAGGAACTACAATTATGGTGCAGTTGGAGAAGCCTTGAAGGTGAACCTACTGGACCATCCAGAATACATTGAGCAGAA TGCAACACTTGCTTTCCAGGCTGCAATCTGGAGATGGATGACACCAAACAAGAAGTACCAACCCTCTGCCCATGATATCT TCGTCGGAAAATGGAAGCCTAGCAAGAATGACACCATGGAGAAAAGGATTCCTGGATTTGGCTCCACAATGAACGTTCTC TATGGGGAGAGTGTTTGTGGACAAGGTGATATTGACCCAATGAACGTGATCATTTCCCATTACCTCTATTATCTTGACCT TCTTGGTGTTGGTCGAGAAACAGCTGGCCCCCATGAATTCCTTTCGTGTGCTGAGCAGGTTGCTTTCAACCCATCTACCA AAGCTGCATCATCTTAAATTAGATAATATTTACTAGCATATGTTATTGTTGTGCCAATCCGTTTCGAAATGGTAAGGTAA TAAGGGTTCTTAAAAGTTATTGGTATGCAATAATTTTTGAAATGTGTGGCAGTGTGTGGATTCTTTATAGCTTTTTTCAT TGTGCAGAAGTAAAGTCATTTGTAATATCACACTTCTTGAAAAAATCTGTATCTGGTATATATTCATGTTAAGGGCGATT TTGTTATTAATATTCATTCCTTGGTTGCAGATGTTGTAATGTAAAATTGAACTGGATTGTTTAGAACAAATCTACTGTGG CTTTTTTAGTGGTGAAAGAGAGTGTTATTGTGAATGATGCTAGCATTTTTCTTGAAATTATTTATATGGCTAATTTGGTT GGCATGAGGTTGTCCTAGCATGAGCAAAAGTCTTAGGTTGGAGCCCGAGTCCCTATAAATGCAGCTGCGTTATGGTAGGA GGACTCAACCCTTCATAATGGTCTTCCCTGACTCAAACACAATTGTCTTAGTGGATACATGTGGTTTAAACTGAAAAAGA ATTACAAGATTAGTGGATACATGTGGTTTAAACTGAAAAAGAATTACAAGAAATAGCACTATCATGTGTCTACTATGGAC ATTATTCACTTCCAGGTACCAAAAGCAACTTTGGAATTGGTTTTGATGAATTTTTTCTGAAGTCTAATTGCAATGCATAA AGTATGAAGAAGTTACGAGGAAGACTACTCCATTCTAAAGCAAGGCATATAATAGGTCTCCGACTCTCAGCAAAATCTCA CCTAGTGATGCTTACAAAGCATTCTTTATAATGTGTATTTTTTTCTACAACCTGTTGAAAATCATCCCCACCAAAGATGG G
CDS sequence (LotjaGi1g1v0530200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGTCGGCGAAACGCACCGCCGTCGTGTTCCTCACCACACTCGTCATCTTCCTCGCCGTGTCCTCCACCGTGGAAGG GGATGACAACACGAAGACACTGGTGAAGTACAAGCACGGGAAGAAGTACTGTGACAAAGGCTGGGAATGCAAGGGCTGGT CCATCTACTGTTGCAACTTGACCATCTCCGATTACTTCCAGGTCTACCAGTTCGAGAATCTCTTCTCCAAGAGGAACACG CCGGTGGCTAACGCTGTTGGATTCTGGGACTACCACTCATTCATCACCGCTGCTGCTCTTTTTGAGCCTCAGGGCTTCGG TACCACCGGGAATAAGACGCTTCAGATGATGGAGATCGCTGCTTTCCTTGGACACGTCGGCGCCAAGACCTCTTGTGGTT ATGGAGTGGCAACCGGAGGACCTTTGGCCTGGGGTCTTTGTTACAACCATGAAATGAGTCCTAGTCAGAAATATTGTGAT GAATATTACAAATTAACGTACCCCTGTACTCCTGGTGCTGATTATTATGGACGTGGGGCCATTCCTATTTACTGGAACTA CAATTATGGTGCAGTTGGAGAAGCCTTGAAGGTGAACCTACTGGACCATCCAGAATACATTGAGCAGAATGCAACACTTG CTTTCCAGGCTGCAATCTGGAGATGGATGACACCAAACAAGAAGTACCAACCCTCTGCCCATGATATCTTCGTCGGAAAA TGGAAGCCTAGCAAGAATGACACCATGGAGAAAAGGATTCCTGGATTTGGCTCCACAATGAACGTTCTCTATGGGGAGAG TGTTTGTGGACAAGGTGATATTGACCCAATGAACGTGATCATTTCCCATTACCTCTATTATCTTGACCTTCTTGGTGTTG GTCGAGAAACAGCTGGCCCCCATGAATTCCTTTCGTGTGCTGAGCAGGTTGCTTTCAACCCATCTACCAAAGCTGCATCA TCTTAA
Protein sequence (LotjaGi1g1v0530200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSAKRTAVVFLTTLVIFLAVSSTVEGDDNTKTLVKYKHGKKYCDKGWECKGWSIYCCNLTISDYFQVYQFENLFSKRNT PVANAVGFWDYHSFITAAALFEPQGFGTTGNKTLQMMEIAAFLGHVGAKTSCGYGVATGGPLAWGLCYNHEMSPSQKYCD EYYKLTYPCTPGADYYGRGAIPIYWNYNYGAVGEALKVNLLDHPEYIEQNATLAFQAAIWRWMTPNKKYQPSAHDIFVGK WKPSKNDTMEKRIPGFGSTMNVLYGESVCGQGDIDPMNVIISHYLYYLDLLGVGRETAGPHEFLSCAEQVAFNPSTKAAS S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 313 | 313 | 8.3E-73 | ||
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 13 | 304 | 292 | 1.4E-174 | – | |
| PANTHER | 13 | 304 | 292 | 1.4E-174 | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 321 | 294 | - | – | |
| SUPERFAMILY | 62 | 313 | 252 | 4.22E-74 | ||
| CDD | 70 | 294 | 225 | 4.09279E-76 | – | |
| Pfam | 70 | 295 | 226 | 1.1E-62 | ||
| Gene3D | 71 | 312 | 242 | 3.1E-86 | – | |
| Gene3D | 150 | 209 | 60 | 3.1E-86 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of LotjaGi1g1v0530200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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