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LotjaGi1g1v0530600.2

Overview

Field Value
Gene ID LotjaGi1g1v0530600
Transcript ID LotjaGi1g1v0530600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 3 subunit H; TAIR: AT1G10840.1 translation initiation factor 3 subunit H1; Swiss-Prot: sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H; TrEMBL-Plants: tr|I3SB83|I3SB83_LOTJA Eukaryotic translation initiation factor 3 subunit H; Found in the gene: LotjaGi1g1v0530600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:105775109..105778811) extracted from Lotus japonicus Gifu genome v1.2.

GAGAACATGGCGACCAGTACGTTTTCTCTCACCGCAAATCTCCATTTTTCTTCACACATGCGTATTAGTACCATTGTTGA CTGACTCGTTTTCTGCAGCTACAGCAAGGTCTTTTCTCCAAGTGGCGGCAACGGAGGAGGTTGCACCGCCTCTCAGAGTT GTTCAGATGGAAGGATTGGTATCAATTCTGACACACTTTTTGATTCTATCAAATTCCGTGTTTTCTTCGCTTTAATTGCT CCATAATACTCTGTTTTTCGAATTGCTGGAAAATGTAACCTTTATATGGGGTTTTGAAGGGTATTGCTATTAGTAATTCT GGGTCTCTGTTTGTTTTTGCATCTGGGTAATCTGCGCTTTTGTTCTTTTGTAACTTCACGTGTTTATGTAAATATGCACT ATTTGTTTTGACCAATCATATAGAATTTTTGGAACCTGAACCGCTTAAGTAAGATTTGACAACGTAGCCTATGCTATGCT GATGGGCTTTGGTCATCCGTATCATGTTGTATGTGTTTGTATGTGTGTGTGTAACTCTTTCCTGGTAAATATTGGAGCAT ATAATTTTGTAAAGTATTTGAGGTAGGTATTAGTTTTTGTATGGTGAAGATGATACTGACACAATTCTGGTCTGGTTGTT ACTTTTTCTTGGTTGAATAGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACTGGACAA CTTCTTGGGCTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAGTACGATATCCCTTTTTCTTTTC TTTCTCTATTTTTCGAATTGTCTAATGTTGCCCTTCTGATGCTTTCTTCATATCTGATACTCGAAATTGTAGATGAGGGA GGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACA ATAATACAGTTGGATGGTATGTGTCATGAAATACCACTTGGCATGTGAGATAACTGCACAAGTGTTTCAAACTCTTTATT TTTTCATAATTATGATTGAGTTTTGGTCGAATATGTTATTTATAAAATTTCTCCAACACATGGGATAATTCTCTGAATAT AGGTATCAGTCTACACTGCTTGGGTCCTTTCAGACCGTGGAGCTGATTGAAACCTTTATGAATTACCAGGTAATGTGGCT CCCAATTATGTATTTATTATTTGCTTAATGTCACTTAAGCCGGGGTTTCGTGGACTAACCTTATATACTTCATGTTATTC TGAGAACCAAATGCTCTTATACTCTATCTACTCTTTGATGTGTATGTTCGGAATTTATTCTTTTTCATGCCCCTTCAAAC TATTTACCCCTTGGTTAAACAAGGTCAGTAATTGGAGGTGATCCCAGTAAGTTACATGGTATACTGTGAAACTATAAATT TGGAATGTCCAACAGACCAACACAAAATAGTATGCACCAGCAAAGATTAGAACTTCATTGGGTAATTATTATGTTATTGT GTAATTCTTGATCAAGAGCGTCAGCTTTTGGCATACTTTGTTGGATTAATAGAAGTTGCCTCTTTACAGTTAACTAAAAA TCTTACACGTACTTTTTGTACTACTTTAAAGTGGAAATGTGTGCTAGTAAAATAAGGGAAGTTGAGTAGACATGGTAGTA AGATGAACAAAAATACGTTTTTATATAAAATCAAGTTGGGAATCTCATGCTGCTCCCATCATCTAGGTTTTATGTCTCAA ATTTATATGAATGACTGATGATGATTTCTCGTATTGAATTTTCATTAACAGTATCTCAATCAGGTAAATGACTGTTTCTT TCAAACTGACCTTTGTTCTTCAGGAGAATATTAGACGCTGTGTTTGCATTGTATATGATCCATCAAGGTCTGATCAAGGT GTCCTAGCCCTGAAGGCCTTGAAGCTTTCTGATTCATTCATGGAACTGTATCGCAGCAATAATTTTACTGGAGAAAAGTA TGAATTTTCTTCTATATGTCATGTTTTCTTTAAGTAGAACCATTTGATTCATTTTCAATCTTGTGAAATAGGTTGAGGGA AAAGAATTTATCATGGGTGGATATCTTCGAGGAAATACCTGTAAGCACTCTAACCTTTGATCAAATAGTCTTTCTTAAAT TGAATTATTGTTTTATGTTACTTTAATACAGTGATCAGTATTTAGGTTATATGTGACTGATATCGAAGTCGTTGCCACAT TTCCTATTTAATGCCGATCCTGTTTCTTATATATTTTATCAATCAGATCAAAGTTTCAAATTCTGCTCTCATCAGTGCTT TTATGACAGAGCTGGAACCTGATACTCCAGTCACGCAGGTGAACAAAGATCTTTTCCTGACACTCTTTTTGTTATTGTAG ATTTAGTTTATGTTGTCATCTGTTATTGTGCTATTGCAGTGTGATTATGATCGGCTGCAACTGTCAACCAGTTCACTATT GGAGAGAAATACAGAATATTTGATCGAGTGCATGGATGACTTGTCACTAGAACAACAAAAGGTTGTTTTAGGTTTTCTTT TAGTAGTTGATTCTTTCTGTTTTGTTTTCAAATATATTTGACGGAAGTTTCTTCTATCTCAGTTCCAATTCCACTATCGG AGTCTGTCTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGTATGATTTAGTTTGTAATTTGAGCTATTT CCTGTTCTAAGTTCTAACTAATAAATGCATTCTAGTTTTTGGTTGTTGTAAGATTAGATTCCATAGATTGGCTGTAGTCT TTTGTGATTCAGCATATTTGAGATTCTATAAATGTGGATTTTCCACTTGTTTTTTATTCTTTCTTTTTACTATTTTAAAA TAATTGAATGATTTAGATATTAATTTTTGCAAACAATAATAATGTCAAAACAGTGTTATGGTGATGAATAAGCTAGCACC TAATGAGAAATTAGTGAACTTTATGACATTTTACTATTTATGTTTTTGATATTTTGTGTAAACAATTCGTATCATAATCA AATTGAATTCATTGGATATTAATATTTTGGAAAGAATTGAAATTGAGGAAATATTTCCACAATTTGAAATGACTGTTGGC AAGCTCCAAACACTCTTTTTTATGTGCTAAGAAGTTATTTGATTTTCTATAACCATTTTATGGTAAAAAATTTGGCTGGA CAATTAGAGTGGTAGCACAATTTTAATTCAAACGACAGTTGTCTAAAGTTTCAACCGAAGATTAAGATAATCCAGTGAAT TGGATTTAAACAATTTCAGCCCTGTGGATTAATACAAAGTGCATTGCTGTTTATGCAGATAAACTATTGTCTTGCTGTTT TTCTTTGGCATGCTTTTTTATTCTATTAAACAAACATGGACATTATACGTTGTAAACTTGTAATAGTTATCTAATCCTTA TTGTGAATTATTGGTCCAGTATATTATTATCTGTTTTGGTTTTTGTAATAATAGGACAGAGAACATGGCACGCAAAGCTG CTGGGGAGGAGCCTTTGCCTGAAGAAGATCCTTCAAACCCCATCTTCAAGCCACTCCCCGAGCCATCACGGTTGGAGAGT TTCCTCATTACAAACCAAATTTCTAACTACTGCAACCAAATTAACGGGTATGTGATTAAATTTTGATGTTGGCCACTATT ACCAGGTTCTTTTTCCATTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0530600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACCACTACAGCAAGGTCTTTTCTCCAAGTGGCGGCAACGGAGGAGGTTGCACCGCCTCTCAGAGTTGTTCAGAT GGAAGGATTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACTGGACAACTTCTTGGGC TGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGAT GGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAATAATACAGTTGGATGGTATCAGTC TACACTGCTTGGGTCCTTTCAGACCGTGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTT GCATTGTATATGATCCATCAAGGTCTGATCAAGGTGTCCTAGCCCTGAAGGCCTTGAAGCTTTCTGATTCATTCATGGAA CTGTATCGCAGCAATAATTTTACTGGAGAAAAGTTGAGGGAAAAGAATTTATCATGGGTGGATATCTTCGAGGAAATACC TATCAAAGTTTCAAATTCTGCTCTCATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACGCAGTGTGATT ATGATCGGCTGCAACTGTCAACCAGTTCACTATTGGAGAGAAATACAGAATATTTGATCGAGTGCATGGATGACTTGTCA CTAGAACAACAAAAGTTCCAATTCCACTATCGGAGTCTGTCTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAAAAGAG AAGGACAGAGAACATGGCACGCAAAGCTGCTGGGGAGGAGCCTTTGCCTGAAGAAGATCCTTCAAACCCCATCTTCAAGC CACTCCCCGAGCCATCACGGTTGGAGAGTTTCCTCATTACAAACCAAATTTCTAACTACTGCAACCAAATTAACGGGTAT GTGATTAAATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0530600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATTTARSFLQVAATEEVAPPLRVVQMEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEAD GANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSDQGVLALKALKLSDSFME LYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLLERNTEYLIECMDDLS LEQQKFQFHYRSLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGY VIKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.140.10
2 213 212 9.2E-40 –
PANTHER
PTHR10410:SF3
7 320 314 8.0E-151
IPR027524
PANTHER
PTHR10410
7 320 314 8.0E-151 –
Hamap
MF_03007
20 324 305 40.482
IPR027524
CDD
cd08065
23 286 264 9.24937E-149
IPR027524
Pfam
PF01398
23 126 104 4.3E-14
IPR000555
SMART
SM00232
24 157 134 3.0E-10
IPR000555
ProSiteProfiles
PS50249
25 158 134 25.492
IPR037518
MobiDBLite
mobidb-lite
264 294 31 - –
MobiDBLite
mobidb-lite
268 282 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0005852
Cellular component Eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0530600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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