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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0531900 |
| Transcript ID | LotjaGi1g1v0531900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor-like protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0531900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105902290..105905249) extracted from Lotus japonicus Gifu genome v1.2.
AATTAATCCTCTCCCTTCTTAACCAACAAACATGATAAAAAAATTAGAAATCCATCACCTCCTATTCCTTCCTGTTCCAA TAAGAACCAAAAACTGTTCAAAAAAAAAAAAAGAACCAAACTGAACCTAATTTTGCTCCCTTCACACCAAAGTTTCGTCC TTTATCTCTTGCGATCAATGTCAAGTAAGTTCTCGATTTCATTTCGATCAATGATCTCACCCATGTGATATTTGCTTCAT TTCCATTCTATATCTTCCAGAAATTTTGGATTTTTTTTTCTTCACTTACTGAATCACTGTTTGATAACAAAACCTAATTC CCAATTATCATTTGCTTAATTGCTTCACTTAGAATGTATGATACCACTTATGCTTCTCAATTCATGTTGGGTTGTGACAT TACACTTTGAGGTGCTTAGTTAACTGTGTAGTGTGTACTGAGTGTATCATATGATAATTTAAAGCATGAAATTAGGTTTT ATCATCCTTGGAAATCATTGTTTATGTTTTTTTTTTCTTTTTTGTGTTCATTTTTTATCCAGATTTGTACTATACTCATG GATGAGAAACCAAGATGAAAAGGTCTGAGAATGACAAAAGCAATTTGGTGGGAAGTAGTTCTGAGCAAGAGAGCCACATC CATAAGAAAAAGGGGAGGAAAGATATTGAAGTGATGGATGGTAATGTTGCTGATAGTGAAGAGGTGCATGTCTTTGATGA GAAGCAACAAAGCAAGATGAAGAAAAGAAAAAATTATGATGATGTTTTACCAACTGGAATACGGGAAGTGGGTTCTTCGA AACGGAGCAAAAAAGGCAAAATGACAGAGGATGGTGAGTTAAAAAACAGTGAAGGTGGTCATAGAACTGAAGAGGAAGAT GATGACCAAGGTCAGAAGATGGAGAAGAAGAAGAAGGAACTGAGTGAAGAAAGCCAACACAATGAATATGATGGGTTTAA GAGTAATGAAGGTGGAGATGATGACCAAGGGAAGAAGATGAAGAAGAAAAATAAGAAGAAACTGAGTGAAGAAAGCCAAC AAAATGAGTGTGATAGGTTTAAAAGCAATGAAGGTGAAGATGATGACCAAGGGAAGAAGATGAAGAAGAATAAGAAGAAA AAACTAATTGAAGAAAGCAAAAGTAAGGAAGAGGATAACAAGTTTAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAA GATGATGAAGAAAAAGAAACTGAGGGACAAGAGAAAAAATAAGAACAGTGAGTTTAACAGCAATGGAGGTGGTTCCTCTT CGGCTAGAGTCAAGGCAGGTGATGCTAATGCTCACGGTGTTGTCACTGCAGTTGGTGATCAAAGCAAGAATATGAAGACA AAAAAGAAAGCCAAGGAAGATACTGGTGAATCTTCTAACCCTGCAGCATATGATGGAACATCCAAACCCAAACGTGTAAC TTTTTCTGATCAAGTGGAGGTTTGTGATGATATTTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCA AAGAGGCTGTTTTTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGACATGATTCTCCATTGCAAATCACAT CCTGAAGTTAGAGATTGTTGGAAGGAAATTGGAGCAGTCTTGCCTAAGAGGCCTCATATCAGCGTGTATTATCGTGCTCA TATTCTGTTCGAAAGGGATGAGACGCGCAAGTGGACACCAGATGAGTTTGAAGTTTTACGAAAGCTACAGAATCAGCATG GATCTGATTGGAAAAAAATAGCTGGAGTTTTAGGTAAACATCCTGTTCATGTTAAGGATGCATGGCGGAGAATAAGGCAA ACCGATACAAACAAAGGACGTTGGACCCAAGATGAGTATCAACAGTTATTTGATTTAGTAAACAAAGATCTACGCGCAAG AGCTGCAGAGGAATGTAGAAAATCAAAACATGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTAACAAATTCG GTGCGAGAAATGGTGCACGGTGCTGCCTAAAGTGGTATAAGCAATTAACATCACCTATGGTTGCTGATGGTGTGTGGAGT GATACAGATGACTACCGCCTGCTAAATGCTTTATATACTTTGGATGCTTACTCAATGGAAGAGGTGGACTGGGACAATCT GCTTGAGCACAGGTCTGGTGATATGAGCCGAAAAAGATGGAACCAAATGGTGCAATATATTGGGCAACATGGAACAAAGT CATTTGCTGAGCAGGTGGAAATTCTTGCTAAGAGATTTTGCCCTGACTTATTGGAAGCAAGAGAGGCCTTTGATAGCAAA CCTGTGGTTGGTTAATGTTATGATCCTGTAGTATGATTTTCCCTGGGGTGAAGTGATTTTGTACAACTGGAGTGTGTTCT CATGGTTATGATGTTTTTGTGTGACCATGCAAACCTTTAACTGGATTGTGTTGGAACTTTAGGGTGGGTTTATAGTAGTG TTTACTTGTTATAAAATACTAATCCTGCTCACTGTGATCTATTTATAATAGAAGTAGATATCTGAGTGCACAACTTGTAC TACAATCACTGATTATATGATTATATCAGAAAGTCCTGATATATAAGCCAAACAGGCATATAAACGTTGTCCATCTAGAG TTCAATACAATCCTAAACTGAATTTTTTTTTTTATTTTACTTTTGGTCCATTTAAATGCAACACTTGTTTTCTTAATTAA AAGCTTAACAGTGCTGAAAACCTATAGTGGACCTTTTTTGTTGGTTAAAAGTAAAGTTTATATCTTATTAAAGTTTGATG CTCTGCTGGTCTCGAACTGAGTCTGTTGATGACAACAAACCACACAACCGGCACTATTCAAGAGAATTGGTTCATTTTAA GTATATCTATATTCACACTTTATCTTAACATCCAAATGAAAATCAAATTTAGACTTACTTTTGCAATACTCTTTTCAAAT
CDS sequence (LotjaGi1g1v0531900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGGTCTGAGAATGACAAAAGCAATTTGGTGGGAAGTAGTTCTGAGCAAGAGAGCCACATCCATAAGAAAAAGGG GAGGAAAGATATTGAAGTGATGGATGGTAATGTTGCTGATAGTGAAGAGGTGCATGTCTTTGATGAGAAGCAACAAAGCA AGATGAAGAAAAGAAAAAATTATGATGATGTTTTACCAACTGGAATACGGGAAGTGGGTTCTTCGAAACGGAGCAAAAAA GGCAAAATGACAGAGGATGGTGAGTTAAAAAACAGTGAAGGTGGTCATAGAACTGAAGAGGAAGATGATGACCAAGGTCA GAAGATGGAGAAGAAGAAGAAGGAACTGAGTGAAGAAAGCCAACACAATGAATATGATGGGTTTAAGAGTAATGAAGGTG GAGATGATGACCAAGGGAAGAAGATGAAGAAGAAAAATAAGAAGAAACTGAGTGAAGAAAGCCAACAAAATGAGTGTGAT AGGTTTAAAAGCAATGAAGGTGAAGATGATGACCAAGGGAAGAAGATGAAGAAGAATAAGAAGAAAAAACTAATTGAAGA AAGCAAAAGTAAGGAAGAGGATAACAAGTTTAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGATGATGAAGAAAA AGAAACTGAGGGACAAGAGAAAAAATAAGAACAGTGAGTTTAACAGCAATGGAGGTGGTTCCTCTTCGGCTAGAGTCAAG GCAGGTGATGCTAATGCTCACGGTGTTGTCACTGCAGTTGGTGATCAAAGCAAGAATATGAAGACAAAAAAGAAAGCCAA GGAAGATACTGGTGAATCTTCTAACCCTGCAGCATATGATGGAACATCCAAACCCAAACGTGTAACTTTTTCTGATCAAG TGGAGGTTTGTGATGATATTTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTTT GACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGACATGATTCTCCATTGCAAATCACATCCTGAAGTTAGAGA TTGTTGGAAGGAAATTGGAGCAGTCTTGCCTAAGAGGCCTCATATCAGCGTGTATTATCGTGCTCATATTCTGTTCGAAA GGGATGAGACGCGCAAGTGGACACCAGATGAGTTTGAAGTTTTACGAAAGCTACAGAATCAGCATGGATCTGATTGGAAA AAAATAGCTGGAGTTTTAGGTAAACATCCTGTTCATGTTAAGGATGCATGGCGGAGAATAAGGCAAACCGATACAAACAA AGGACGTTGGACCCAAGATGAGTATCAACAGTTATTTGATTTAGTAAACAAAGATCTACGCGCAAGAGCTGCAGAGGAAT GTAGAAAATCAAAACATGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTAACAAATTCGGTGCGAGAAATGGT GCACGGTGCTGCCTAAAGTGGTATAAGCAATTAACATCACCTATGGTTGCTGATGGTGTGTGGAGTGATACAGATGACTA CCGCCTGCTAAATGCTTTATATACTTTGGATGCTTACTCAATGGAAGAGGTGGACTGGGACAATCTGCTTGAGCACAGGT CTGGTGATATGAGCCGAAAAAGATGGAACCAAATGGTGCAATATATTGGGCAACATGGAACAAAGTCATTTGCTGAGCAG GTGGAAATTCTTGCTAAGAGATTTTGCCCTGACTTATTGGAAGCAAGAGAGGCCTTTGATAGCAAACCTGTGGTTGGTTA A
Protein sequence (LotjaGi1g1v0531900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRSENDKSNLVGSSSEQESHIHKKKGRKDIEVMDGNVADSEEVHVFDEKQQSKMKKRKNYDDVLPTGIREVGSSKRSKK GKMTEDGELKNSEGGHRTEEEDDDQGQKMEKKKKELSEESQHNEYDGFKSNEGGDDDQGKKMKKKNKKKLSEESQQNECD RFKSNEGEDDDQGKKMKKNKKKKLIEESKSKEEDNKFRSNEGEDGDQGKMMKKKKLRDKRKNKNSEFNSNGGGSSSARVK AGDANAHGVVTAVGDQSKNMKTKKKAKEDTGESSNPAAYDGTSKPKRVTFSDQVEVCDDILVRGKRFTPEEDEKIKEAVF DYIESHGLGDEGLDMILHCKSHPEVRDCWKEIGAVLPKRPHISVYYRAHILFERDETRKWTPDEFEVLRKLQNQHGSDWK KIAGVLGKHPVHVKDAWRRIRQTDTNKGRWTQDEYQQLFDLVNKDLRARAAEECRKSKHGMLRDNVSWEAISNKFGARNG ARCCLKWYKQLTSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQYIGQHGTKSFAEQ VEILAKRFCPDLLEAREAFDSKPVVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 285 | 285 | - | – | |
| PANTHER | 8 | 585 | 578 | 1.6E-177 | – | |
| MobiDBLite | 18 | 65 | 48 | - | – | |
| MobiDBLite | 73 | 176 | 104 | - | – | |
| Coils | 99 | 119 | 21 | - | – | |
| Coils | 174 | 194 | 21 | - | – | |
| MobiDBLite | 183 | 212 | 30 | - | – | |
| SMART | 303 | 374 | 72 | 4.1E-4 | ||
| ProSiteProfiles | 374 | 425 | 52 | 9.286 | ||
| SMART | 376 | 423 | 48 | 3.4E-4 | ||
| SUPERFAMILY | 378 | 438 | 61 | 8.69E-10 | ||
| CDD | 379 | 420 | 42 | 2.84707E-4 | ||
| Pfam | 380 | 438 | 59 | 4.9E-11 | – | |
| Gene3D | 381 | 421 | 41 | 4.3E-11 | – | |
| ProSiteProfiles | 422 | 491 | 70 | 7.944 | ||
| Gene3D | 425 | 492 | 68 | 2.8E-8 | – | |
| SMART | 426 | 493 | 68 | 0.051 | ||
| CDD | 429 | 489 | 61 | 0.00856251 | ||
| SUPERFAMILY | 471 | 549 | 79 | 4.9E-5 | ||
| ProSiteProfiles | 493 | 546 | 54 | 6.783 | ||
| SMART | 497 | 548 | 52 | 65.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0531900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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