Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0532600 |
| Transcript ID | LotjaGi1g1v0532600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G05610.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21; TrEMBL-Plants: tr|I1KGU8|I1KGU8_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0532600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105952431..105957049) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGAACTTTGAGAGTTTTATCAAACATGATGCATTCTCCATAGATTATATGCTAAGTGTTTGATAAATCTTTACAAAG TTCATCTCATTATTCATAAATTTACAACAGGACCTATTAAAATCAGTAGTCAAAATGTCTGGAGGAGATGCAGAGAAGGG AAGAAGAGTCGCCACCATTGGTGTTGCAACCTTGCTAATGGTGGCTATGGTTGTGGCCGTCACAGTTGGCATCAACAGCA ATCATCATAAGAGCGAAGCAAACAATGATATAGAAGACAACATCAAGGACAATAGCCGCGTCGCGGCCACGGTAAACGCA GTCCAAACCCTTTGCCATCCCACTGATTACAAGAAGGAATGTGAGGAAACCTTGATAGCTGAGGCTGACAACAGTCACAA CACCACAGACCCAAAAGAACTAATCAAAATTGCCTTCAACATTACAATTAAGAAACTTGGTGACAAACTCAAGGAAACTG ATCTGTTGCATGAGGTTGAGAAGGAGCCAAGAGCCAAGATGGCACTTGACTCGTGCAAACAACTCATGGATCTTTCAATT GAGGAGTTAACAAGGTCAATTGATGGAATAGGTGAGTTTCATCTCAAGAATCTTGACAAAATCCTCATGAATGTTAAGGT TTGGCTCAGTGGTGCAGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACTAGTGAAGCTGGTACAAAGA TGAAGGAATTTTTAACAACAAGCATGCACATGAGCAGCAATGCCCTGGCTATTGTCTCTAAGCTTGCTGACGCCGTATCA GAATGGAACATTACAAAATTAACCGGGCGTCGCCTTCTTCAGGATTCTGAGACTCCCTCATGGGTTGAAATTGATCATCG TAGACTCCTTGATGCAAAGAAAAATACATTAAAACACAAGCCTAATGTGACTGTAGCCATAGATGGAAGTGGAGATTTCA AGAGCATCAATGAGGCATTGGAGAAGGTTCCTAAGCATAACAAAAAACCATTTGTGATTTACATCAAGGAGGGGATTTAC CATGAGTATGTTGAAGTTAACAAGCATATGACCCATGTTGTGTTTGTTGGTGATGGTGGCAAGAAGACACGAATCACTGG CAACAAAAACTTCATAGATGGAATCAACACTTACAGAACCGCAACTGTTGGTAAGCTCCTCTTTTAAACAAATACATTTT GAAAAATTGCTAGTCAAAACCATAGAGACATATTTATGTATGAAATGTAAATTAGTGAAATAATATTTTTATGCACAAAC TCATGCAGCTATCCAAGGAGATCATTTTGCTGCCATCAATATGGGTTTTGAGAACTCTGCAGGCCCCCATAAGCATCAAG CAGTAGCTCTAAGGGTTCAAGCTGACAAGTCCATATTCTATAATTGTTCAATGGATGGGTATCAAGATACACTCTATGCA CACACCATGCGCCAATTCTATAGGGATTGTACTATTTCAGGTACTATAGACTTTGTCTTTGGTAATGGGCTAGTCGTTTT TCAGAAATGCACTTTCGTGGTCCGAAAGCCTATGGCAAACCAGCAATGCATTGTAACTGCACAAGGTAGGAAAGAGAGGC AGGGACCATCTGGAATAGTAATTCAAGGGGGCTCCATTGTATCTGACCCTGAGTTCTACCCGGTGAGGTTTGATAACAAG GCCTACCTCGCCCGTCCGTGGAAGAATTACTCGAGGACCGTCTTCATGGACACCTACATTGATGATTTGATTCATCCTGA TGGATATTTGCCATGGCAAGGATTAAATGGACCTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAACACCGGCC CCGGTTCTGACAAATCAAAGCGCGTAAATTGGGCTGGGATTTGGAACCTAAACTCAAAGGCTGCACATTGGTTCTCACCA TCCAAATTCTTCCATGGAGATGATTGGATTGAGGTTACTGGAATTCCTTATTTTTCTAGCATTCCAGGACACTACAAACA CAAGAAGACATCACTTAATTGGTGATGGTGATGACGGATGCTCGAGAGAGACTAATAGTTAGTTAATTCTCCCACTATTC ATTTCCTTTTTTCTTCTTGATTTTATTAATTTGTTCTTGAGTCTTCATATTCTTGAAGGGATGTAAAGACTCGCAATTGA TCAATGTTTTTGTGACTTCAATTTTTTGTTTTGTTTTTGTGACTTTGTAAACTAAAGACTCACATTTTAAATCACAAAAT CTAAGCCCATTCCGTGTGGTATTCAAACAAGAATATAATGATTCATATACTCACAATCAACCTTCTCAACAAAGATCTCA CTATGTAATGGACATTGTTCATTGTTCATAAGAAACAACTATTGTTCGTACATCTTTCCTTTTTGGCTTAATTCCAGTTT AGGTCCCTGATGTTTCACAAATGTTCAATCTGCACCCCCTGTGTTTAAAATGTGCGGTCAAACTCCCTCATGTTTCTAAA ACGGTTGATTGAAGCCCTTCCGTCCATCTCTGTTAGTTGACCAAACGGAAATACTGACGTGTCACTTATTTAATTCATAA TATATAGGCTACTAATTGGTGACGGAAATAATCCGTCACAAAACCCTTCAGCCAATACATTTGTCTTCTTCCTCACACAT TTCTTGTTTCTTTTTCTCCTCTTCTTCTTTCTCGCAGGTACTGGTAATGCAGAACAAATAATTAAAGCTTCCCAGACCAG AAAAGCACTCAAATCATGTGGCACAACTGCAAAACACTCAAAGATATGTCACAGGCACATGTGGCGAATTAGCTGGTAAC TGCTTCCATAGCTCAGATCCTGGAAGTAACACTGTCTCCTAACTCAAGATTTTCCCTCTGGTAAATCTCATACTTTTTGC TGCATCTGAGTAATTTTTGTACTCTCTATCCCTCTCATACTCATTATTTTCTGAATTTACCAAAGATATTAACTGTCCTA TCTTCTCTTCCCAACTCCCCAAGAAAAATATCAATTTGGGTATTCTCTATTTACTCAAGATCTGCTAAATTCAAAGTGAA AGTTTCTTTTTTTTTCTTACCTCGAAATTTTATTTGCACTTACCAAAATTCTGAAGTGGTAATATCTTTGATTTTCAGTC AATGGCTTGGACTATTGGTCATGGTTAGCATTTTCCTATGCTCTGTTTCCATTCTCTAAATTTTCTGTTGTTGGGGACTG GGGAGTCTGCGAGAGTGTGAGGTGAATATTTAAAGCTGAGATTTTTTCAATTATCTTCAACTTAGCAAGTTTGGTTTTTT GCTTCTTTATCTTCCAGAATTCAATTTTCTCAAATCATTTCCTAAAGACACTATCTTTACTAGTTATTCAAAGAATCTTT GAACTTGAACTGTTCATTTGTGTGCCTTTGACATGTAGGTCTCAAGTAAATTAGATTTACTTTGCAGTTGTGCTTCTTTA CAGGTTTCTGATTCTGAACGATGAACAAACAAGTTTATGGGTATGAACGAACAGGTTTCTGGGATCTGGGTTGGTTTTTT GGGGGTTTGGATCGATGGGTGCATTCTGGTACGGTCTGTGTCTATATAGGTTTCTGGTTTTTATTCCCTTTGGTGGCTGG TTGCAGCGTGTTTGAAAGAAAATAATGTGATAATTCTGAAATGTGTGAGGAAGAAGACAAAGGTATTGGCTGAAGGGTTT TGTGACGGATTATTTCCGTCACCAATTAGTAGCTTATATTTTATGAATTAAATAAGTGACACGTCAGCATTTCCGTTTGG TCAACTAACAGAGATAGACGGAAGGGCTTCAATCAACCGTTTTAGAAACATGAGGGAGTTTGACCGCACATTTTAAACAC AGGAGGTGCAAACCGCACATTTATGAAACATCAGGGACCCAAACTGGAATTAAGCCTTCCTTTTTCTTTTGAATTCATGT ATCTAAATATCTAATAGTACCTCACAATGGCTACCAAACAAGAATTTGATTTTTTTTTCCTACCATTCTCAAGTTGGTAC TACAACACAGGGGATATTTAAGCCTTTTAAAAAGCAGCCTACAAAGTATTAATCAGATTTAAAACATGAAAATTGCTTTT TACGGGGTCGAAACCTGCAAATGGTTTCTACATAAAATATGATTGGCCTTTAATTCCTTCAATATAGGCAACTACCTGTC AAACAATGTTAATAAAATTTTACCATCAGATTTTGAAGTGCAAAAAGGAGGAGAAATTGATTTCACATTAATTCATTTCA GACCTGTGAATCTTTTTTTTGGTACATCCAAAAAGGAAAAAACAGGCAAAAAGCCAAGATGGGAGAAAGCTGCTGGGGGG CCTCATGTACGCAATTGGTATTCTTTTTCAGAAATAATTTATGTATATTGAGAAAACATGAGAACAAATTTCTTAAGTGT AGGAGATTGATAAAAGACGAGAACAACCAAATTAAGATGATCAGATCAGACACCCCAAAAAACAAAATAACCAACCACGA AAAGATAATTGTAATTGATATTTTATTCCGCTGGAAAACAAAAGAAGTATAGAATTCACTTCAAGAGATTACTAGCCCAA TTTTGTTACACACGAAAGCTTTGATATGATTCAACTTTCACTTTCTAACTTGGATTAAG
CDS sequence (LotjaGi1g1v0532600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGAGGAGATGCAGAGAAGGGAAGAAGAGTCGCCACCATTGGTGTTGCAACCTTGCTAATGGTGGCTATGGTTGT GGCCGTCACAGTTGGCATCAACAGCAATCATCATAAGAGCGAAGCAAACAATGATATAGAAGACAACATCAAGGACAATA GCCGCGTCGCGGCCACGGTAAACGCAGTCCAAACCCTTTGCCATCCCACTGATTACAAGAAGGAATGTGAGGAAACCTTG ATAGCTGAGGCTGACAACAGTCACAACACCACAGACCCAAAAGAACTAATCAAAATTGCCTTCAACATTACAATTAAGAA ACTTGGTGACAAACTCAAGGAAACTGATCTGTTGCATGAGGTTGAGAAGGAGCCAAGAGCCAAGATGGCACTTGACTCGT GCAAACAACTCATGGATCTTTCAATTGAGGAGTTAACAAGGTCAATTGATGGAATAGGTGAGTTTCATCTCAAGAATCTT GACAAAATCCTCATGAATGTTAAGGTTTGGCTCAGTGGTGCAGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAA CACCACTAGTGAAGCTGGTACAAAGATGAAGGAATTTTTAACAACAAGCATGCACATGAGCAGCAATGCCCTGGCTATTG TCTCTAAGCTTGCTGACGCCGTATCAGAATGGAACATTACAAAATTAACCGGGCGTCGCCTTCTTCAGGATTCTGAGACT CCCTCATGGGTTGAAATTGATCATCGTAGACTCCTTGATGCAAAGAAAAATACATTAAAACACAAGCCTAATGTGACTGT AGCCATAGATGGAAGTGGAGATTTCAAGAGCATCAATGAGGCATTGGAGAAGGTTCCTAAGCATAACAAAAAACCATTTG TGATTTACATCAAGGAGGGGATTTACCATGAGTATGTTGAAGTTAACAAGCATATGACCCATGTTGTGTTTGTTGGTGAT GGTGGCAAGAAGACACGAATCACTGGCAACAAAAACTTCATAGATGGAATCAACACTTACAGAACCGCAACTGTTGCTAT CCAAGGAGATCATTTTGCTGCCATCAATATGGGTTTTGAGAACTCTGCAGGCCCCCATAAGCATCAAGCAGTAGCTCTAA GGGTTCAAGCTGACAAGTCCATATTCTATAATTGTTCAATGGATGGGTATCAAGATACACTCTATGCACACACCATGCGC CAATTCTATAGGGATTGTACTATTTCAGGTACTATAGACTTTGTCTTTGGTAATGGGCTAGTCGTTTTTCAGAAATGCAC TTTCGTGGTCCGAAAGCCTATGGCAAACCAGCAATGCATTGTAACTGCACAAGGTAGGAAAGAGAGGCAGGGACCATCTG GAATAGTAATTCAAGGGGGCTCCATTGTATCTGACCCTGAGTTCTACCCGGTGAGGTTTGATAACAAGGCCTACCTCGCC CGTCCGTGGAAGAATTACTCGAGGACCGTCTTCATGGACACCTACATTGATGATTTGATTCATCCTGATGGATATTTGCC ATGGCAAGGATTAAATGGACCTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAACACCGGCCCCGGTTCTGACA AATCAAAGCGCGTAAATTGGGCTGGGATTTGGAACCTAAACTCAAAGGCTGCACATTGGTTCTCACCATCCAAATTCTTC CATGGAGATGATTGGATTGAGGTTACTGGAATTCCTTATTTTTCTAGCATTCCAGGACACTACAAACACAAGAAGACATC ACTTAATTGGTGA
Protein sequence (LotjaGi1g1v0532600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGGDAEKGRRVATIGVATLLMVAMVVAVTVGINSNHHKSEANNDIEDNIKDNSRVAATVNAVQTLCHPTDYKKECEETL IAEADNSHNTTDPKELIKIAFNITIKKLGDKLKETDLLHEVEKEPRAKMALDSCKQLMDLSIEELTRSIDGIGEFHLKNL DKILMNVKVWLSGAVTYQDTCLDGFENTTSEAGTKMKEFLTTSMHMSSNALAIVSKLADAVSEWNITKLTGRRLLQDSET PSWVEIDHRRLLDAKKNTLKHKPNVTVAIDGSGDFKSINEALEKVPKHNKKPFVIYIKEGIYHEYVEVNKHMTHVVFVGD GGKKTRITGNKNFIDGINTYRTATVAIQGDHFAAINMGFENSAGPHKHQAVALRVQADKSIFYNCSMDGYQDTLYAHTMR QFYRDCTISGTIDFVFGNGLVVFQKCTFVVRKPMANQQCIVTAQGRKERQGPSGIVIQGGSIVSDPEFYPVRFDNKAYLA RPWKNYSRTVFMDTYIDDLIHPDGYLPWQGLNGPSGMDTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAAHWFSPSKFF HGDDWIEVTGIPYFSSIPGHYKHKKTSLNW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 42 | 42 | - | – | |
| PANTHER | 1 | 582 | 582 | 0.0 | – | |
| PANTHER | 1 | 582 | 582 | 0.0 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 34 | 590 | 557 | - | – | |
| TIGRFAM | 56 | 217 | 162 | 1.3E-26 | ||
| SMART | 58 | 213 | 156 | 1.1E-36 | ||
| Gene3D | 60 | 219 | 160 | 4.9E-19 | ||
| Pfam | 62 | 213 | 152 | 3.1E-26 | ||
| SUPERFAMILY | 62 | 217 | 156 | 4.71E-31 | ||
| CDD | 65 | 218 | 154 | 3.90065E-43 | – | |
| Gene3D | 258 | 577 | 320 | 1.9E-120 | ||
| SUPERFAMILY | 262 | 574 | 313 | 7.46E-104 | ||
| Pfam | 264 | 563 | 300 | 1.1E-130 | ||
| ProSitePatterns | 408 | 417 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0532600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…