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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0533800 |
| Transcript ID | LotjaGi1g1v0533800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L23; TAIR: AT3G55280.1 ribosomal protein L23AB; Swiss-Prot: sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a; TrEMBL-Plants: tr|I3STQ8|I3STQ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106213778..106217901) extracted from Lotus japonicus Gifu genome v1.2.
CCGTCATTTCCCGTTCTACATACTACATTATAAATCACCACTCACCATCTTCCTCCTCCAATCCAAAACCCTAATTTTGG CCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCCATTTTCAAGGTTTCTCAATTTCTCTCACTTTCAGATTCTT CAATCTCTCCTTTTCAATTCTTAGTAACTGAATCGTAGCCATTGTTTTATCCAAACTCTGAAGCTTGTTTCGTTGCGATT TTGAACCCTGTATTATATATCTCTCTCGCTGTTTATGGGTTTATGCTTGAATCTGCTAATGCGATCTGATATCATGCGTT TGCAGGAGCTTGGAAGAAGCGTTGCTGAGAGCTCGCAATGTCTCCAGCAAAGGGTGAGTCTTACATTCTTCCTTATGTCT CCATTTTCATTACACAATCTATCTATCTGACATTGTAACTATCGTAGTTTAATTGCTGAAAATTAGATATTTTTTTTTCG TTGAAATATGATATGTTTGCTAAAGTTTGTTACTTTATTCATGTGGTGAATGCAGTGTGTTTGTTATTTTAAATGGGTAC TTAACAAACAGTAAAGGACTGAAGATATATTTGCATGATCTAAAGAAAATGGATCCCCTTTTTTGTATGATTTGTACATG AATGAAGAGTTTATGATTTTTCATCGAGATTAGTGAATTTTGAGTGTTTGCACTTTGCTGTGACATTGAAAAATCATAAT GATCATGTTTTGAGTTTTGCAGTATTGGACAATGTTTGTATGAGCATTACATTTTCTGTTCTAGTTAATAATGCAATGCC AAGAGTATTCTTGTATTATATTGCATTTCATTTCAGCTACTCAATCATACGTCATTTCTGATAAAAAACTTAATCAGCTT TTCTGCTAGTTTGGATGTTCTGGGCATGTGTTGTTTTATAGATGTTATGGCATTATTGGGTTTATGTATCTGATCTAGTT GCTTTTTTTGTTATTGTTCTGTAGCGGACACAACTAAAAAGGCTGATGCCAAAGCTCAGGCCTTGAAGACAGCCAAGGCT GTGAAATCAGGTGGCAAGGTGATCAAGAAGAAAGCTAAGAAGATCAGGACAACCGTCACATTTCACAGGCCCAAGACATT GACTAAGGAGAGGAACCCTAAGTATCCTCGCATCAGTGCGACCCCAAGAAACAAGTTGGACCACTATCAGATTCTCAAGT TTCCTTTGACTACTGAATCTGCAATGAAGAAGATTGAGGATAACAACACCCTGGTTTTTATTGTTGACATCCGTGCTGAT AAAAAGAAGATTAAGGCTGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGTAATGAAA ATAACATTGTATATAGGCATGCTACAATGTAATTTTAATCACTGAAACCCATTCTATATAGATCAAGAGGACTAGTTGCT TTGCTTGCAGGTTGCAGTGAAAAGTTCATAATACTCTGAATTCAAATGCATTATAAAATACAGAACTTCATGACTTCTTT GCATAGTTTTAACTGACCTCTTTATTTTCTATTTTGCAGGCCCGATGGAACAAAGAAAGCATATGTGAGGTTGACTCCAG ATTATGATGCCTTGGATGTAGCCAATAAGATTGGTATCATCTAAATTATTGTGCTGCTTCATTAGAGCAAAGTCAATTCA GCATTATTGAGATAGTTTTCCATTTCCTTTGTTAGGACTCCTTTGCTATCACCGTGTATTAAAATATTGTGCATTCAATT TTGTTTACCTTTTGCTGAAATCAGTTCAATACCAGAAGTAACTCATAATTCATAACTGATTTCACATTTGCTTTATAATT AGTATCATTTTAATGTGCACATATCATATCTTGTCGGTTGTTTAATCTATCAATTAGTTTTTGAACTTGTTTACAGGGTA AACTCTTACTACCTTAGCAAATAAGGAAGGAAAACATCTCATTACTCTTTACTGAACCTTTTCTTTTGTTCCTTAGAAAA TCCAGACATAGTCATGTCCCTACCCTGTTTGAATTTTGGGTAGGGACTGTTACATGTCTGGGACATAATACACCAAGAGT GAGTCAGATGAATATGGGTTTCCCATGTTGGCTGATAACATCTCTTGGAAAGGTGTTCATCGTTGCCCAATAATATACCT TGTTATTATTTGAGCTACATCTGGATTCCACATCTCAAATCCTCTGCTCTTCAGAGATCTTTCACATTTCAACTTTTGAA ACCCAGTCATGCAATCAGGCTTTGAGATTATTAGGAATTTAAGATAGCAAATAAGAAAAGAATACATGCCATCACTGATT ATTTTTAGTTTTAAAAACCAGACATAGTCAAGTTTTTACCGTTTTAAATTTTGGTAAGAACTGTTACTTGTCTGGGACAT TGTAATCAAAGAGTGAGTCTGAAAATATGGGTTTCCCATATTCTCTGATAACATCTCTTTGTAAGGTGTTCATCGTTGCC CAATAATGTACTTTGTTATTACTTGAGCTACATCTGGATTCCACATCACATCTATCTGGATACCTCTCTCATTCTTCTCC ATTTTAACCTTATTTTAAATTTGGATTGCAGTTATAATTTGAGAGTATTTTGTTAGCAAATAAGATAGGAACACATGTCA TGACTGATTTCTTGTTAAACCAAACATAGTCAAGTTTCTACCGGTTTTGTAATTTTGGTAGCAACTGTTACATGTTTGGG ACATTATATATGGAGTGAGTCTGTTGAATGTGGGTTTCTCATGTTCTTTGATAAAATCTCTTGTCAGGTGTCCATCGTTG CCCAATAATATTCTTTGTTATTATTTGAGCTACATCTGGATTCCACATCACAAATCCCATGCCCATTGTACCATTATTCC TTATAATCCAAGAAATTGCTAATGGAGAGTTGCATGTTTTATGAAAGTTGGGATTTTTTGAGTGAGTCCTGCAGTTAGGA TTTATGAGTGTGTTATTTACATGAACTATATCTAATTATTGCAGGTTCTTGTAATGGTGGCAGTATGTTTGCATGGTCCA GCATGTGACATTAATCAAACCATGCTTGATGTTTTGGGGCTATTTTGAGGTCTAGTTAGGACCTTCATTTTGTGATCAAT CGATAAGTTAATAACTCGCTTCATATGGTTTCTTTTCCAAGCTTGAATGAGTTCAACTTCTCGTAATTAAATACTCATTT GATTAGTATTGACAACAAAGAAATTGTGTTAAATATTACAATGTGTAGTATTTATAGTGTAAAATTGGAAATTTGTGTGG TTTGAAGATATAAATATAGCCTATTTTTGAAAAAAAAAAGTGAGCAAAAAACTACTAGCCATATTCCTTGACCTACTACT ACCTCTACATTCTCTTTATATTCTCTTGACCTGAAACAACACTAACCTAAGAAAGTGGGGCGGGTGCTCACTCTCCTTCT ATACCCACCCCTTTCCGCCTTTTTTCTCTCTGTTTCAACTTTCCTCTCCTCCTTCTCCCATTTTCCACTCTTTCTCAACT TGCTCTCAGATTGATAGTTCATGGCCTTCATTCAATTGTGGCCATAGCAAGAGATTAGATGTTCCAATCAAATCTGAGCT AATGCCTACTATCAGATTGGAGCAAATCACAGTGCGTGACCACCAGATTGGAGCTTCCACCCATTGGATCAGAGCTTCCA TCCTCTTGTTTCCTCTTCTATTGATTTTTATTTTTTTATTTCTGTAAATCTTTTAATTTAGTTCGTCTTTTGTACATCTT TTGATTTTTGTTGATTTGTATCCTTCATTGGAAATAAAATGGTAAATTTGTTCTGAGACCCTCTTATGTTATTTTTTTAT TTGGTCAATTTCTTTTCCAACTGATATTAGAAGATGAATGAGAGATAATTTTTTTTTATATTTTAGAACTCAATAAAGCA AAACACCTTATGAAAGACATCGCTTCTTAATTTTAAGAACCAAAAGTCTTCTCCAATGGATTAAGAACCCAAACGTAAGT TGGAAATGCTCTAAGAAGTATGCTATGAAAAAAAAAGATTGACTACTTTTTTCTTTTCTTTTCTTTGTAGTGAGCCTATT CTTTTCATTTTCTTGTTAAAACTAACAAAAGACAGGCTATGACA
CDS sequence (LotjaGi1g1v0533800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCAGCAAAGGCGGACACAACTAAAAAGGCTGATGCCAAAGCTCAGGCCTTGAAGACAGCCAAGGCTGTGAAATC AGGTGGCAAGGTGATCAAGAAGAAAGCTAAGAAGATCAGGACAACCGTCACATTTCACAGGCCCAAGACATTGACTAAGG AGAGGAACCCTAAGTATCCTCGCATCAGTGCGACCCCAAGAAACAAGTTGGACCACTATCAGATTCTCAAGTTTCCTTTG ACTACTGAATCTGCAATGAAGAAGATTGAGGATAACAACACCCTGGTTTTTATTGTTGACATCCGTGCTGATAAAAAGAA GATTAAGGCTGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGCCCGATGGAACAAAGA AAGCATATGTGAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAATAAGATTGGTATCATCTAA
Protein sequence (LotjaGi1g1v0533800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPAKADTTKKADAKAQALKTAKAVKSGGKVIKKKAKKIRTTVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPL TTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 155 | 151 | 1.2E-88 | – | |
| PANTHER | 5 | 155 | 151 | 1.2E-88 | – | |
| Pfam | 14 | 64 | 51 | 2.7E-17 | ||
| Gene3D | 37 | 155 | 119 | 4.9E-60 | ||
| SUPERFAMILY | 72 | 148 | 77 | 6.47E-27 | ||
| Hamap | 75 | 155 | 81 | 21.996 | ||
| Pfam | 75 | 137 | 63 | 1.3E-13 | ||
| TIGRFAM | 79 | 155 | 77 | 9.3E-29 | ||
| ProSitePatterns | 133 | 148 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi1g1v0533800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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