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LotjaGi1g1v0533900.2

Overview

Field Value
Gene ID LotjaGi1g1v0533900
Transcript ID LotjaGi1g1v0533900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description PsbP-like protein 1; TAIR: AT3G55330.1 PsbP-like protein 1; Swiss-Prot: sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic; TrEMBL-Plants: tr|I3S322|I3S322_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:106218712..106223564) extracted from Lotus japonicus Gifu genome v1.2.

CTAAGGAGGGGCTAAATTGTTACACAGTGGAGCATAAAGGATAAGTCAAACTCTGAAGGGTGTGTCCTCCACCACATAGA AAGAGAATAAGAACTTGCTTCATTTTTCTTTACAATCACAGACAACAATGGTGTCCCTGCAGAATTCTCCTACACTTCAC CGCACCCTCTTCCTCAACTCTTTCCCTCAGGTACTTTTCCTCTATCTCTCTTATGCTTTCACTTGGTGGTTTAATATTCG TTCTCTGTTTCTGAAACATGGGCCAACCACAGAAGCATGGTGCTTCTCGTTCACCTAGAAGAGAAGGCATTTCCTTCACT GTCAAAGCTGCCCATGAACCTTCAGCTTCTTCAGCTGGGTTTCTTTCTCAAGGTTGATTTATTTTCTTTTTGTCTAATTG AGCTTGTGTTCAAAGCTATCATTGTATATGTATGTGTATGTGTATGTGTATGTATACCTTTATAGTACTGATTTTGCTTG TTTTCTGAATAGCATTGTACAAGTAATCTATTAGCTGGCATTTAGGCACTACCTTGTTGCTCTTTGATTCTTCAGTTTCC AAAGGATAAGTGTGTGCCATGAGCATATTGAACTTGTCTGCATATATGGTCATCAATGCGGGCTAATTAGCTTCTGATTA AGATGCATTGCGCAATGTACATCTTGTTACAATCAAATAATGTACCTGTTTGGATGCAAACCAAAGAGCATTTATTGGAG CTTATTTAGTGCATTTTCTAGTAGATAAGCTTCAATAAGCTCGTATCCTAACGGGATAATGGCGCTCACAAACATCATAT AAACCACATATGAATTATCTAGGATATTAACCTTGTTATTAGTGTTTTAAGCAAGATCAGCAAAGCATGTTTGGGAATGA GAATACTAAACAACAATTTGGTTAGGGCTTCAAGAATGACACAAATGTGAACTGTTTTGAGTTTCGATTATCAATAGCTA CTTCCTATATCTGTGTTGTAAACAACTTCAACAATAACAACAGCAACAACAACAGAACTATTAGAATCTTTTCCACTAGA TGGGTTCTACTACATGGATCACAAGACATGATAATGCCATGTGACATATTTGTACACAACGTCATTAGAGAATTGTCTGA CATTGAATTGTTACATTTACATTGGGACATCATCTATCCTGTTTTTAATTCGTTTGTGATACTTTGGCAGATAGACCAGG GAGGCGCGAAGTGATTGCCATTGGGACTACTGCCCCATTAGTATTTCTGTTCAGCCAAAACTCAAGCTCTTGTAAGATCC CCATTTTGTTAAGTTTTCCATATATAATGCTACTAAATTGTGCTTGAGTAGGATGGTGCAAATGCTGTTTTTGCCTCCTG TTGTCTTTCCTAAATACTGAGGCCTGACATCTTGAGGATATACCCTTGATATGGCTCAGTTGCTGCAGAAAATAAGAAAG GATTTTTGCCAGTTACGGACCAGAAAGATGGATATACATTTATCTACCCTTTCGGGTGGCAGGTGAGCATTGTTTATGCA CTTTCTGACCAATATGACTTTGCACCCGTTTGGATGCAAACCAAAAAGCAGTAATTGGAGCTTATTTAGTGGATCTTAGA TAAGCTCCAGTAAGCCTGTATCCAAACTGGCTCTTTAGTATCTATACTAGTTGATTTATCTATAAAAAGCTAAAGTGGAA ATTAAGGTAGCTCCTTCATTTTTATTTTATTTTATCATGGGGAGTGGGCAGGAAGTATCGATTGAGGGTCAAGATAAGGT GTTCAAAGATGTCATTGAACCGCTGGAAAGCGTCAGTGTTAATATAATCCCAACAGGCAAACAAAATATTAAAGAATTTG GGCCTCCTCAACAGGTTAGGCTTGTATCAGAGCGAATTGCATTGTTTTTAAAAGGTTCAATTGCGTATTTGATTTTAATC CTCTAATTTTGGTTGCAGGTTGGAGAAACTCTGATAAAAAGGGTTTTGGCCCCTCCAAACCAGAAAACGAAGATAATTGA AGCAACAGAGGTTTGATGTCCTACATCCCTTCTCCTCTTTTACAGTAACTTTTGTTACTTTTTTTGGTAGTTAGACTCCA TGCACATAATGTTACATTTGTTCTTCATCCATATATGTATGTATTCCATGTACAATTCTATTATACTAGTCTCATCCCAT TTTGAATCTCAAACTGCACACAAGATATGGTTAATTGAAGGAGTAAAATATTATGCTTCCTTTACCACCATTGAAACTTT TGATCTCACTTATTCTTCCTTCATATGCTCCTTTAACTTTCCTGTGAAAGAACAGTCTCTGATGTGTCTCCTCGGTGAAT ATTTTGTGCAAGTATCTATAAGATGACTTTCATAGTTATTTATTCAGCCTCTGGGTCTGGGATAGCTTTGCCCTTAAAAG ACGAGATATTGTGCTAATGATCAATTTGACCAATGTGGATATTAGCATGATAGTCCATCCAAATGTTATTTTGACATGTA GACTATCTTAATTTGGACTGACTTAGCTACAAGGAAATTGTCTTCACATAGTATATTAGCTTGTTTAACTTACCTCTTTA TCCAATGCAAAACTGAAAGATGATATTGTGTATTTGTGTTGCTTTTGTTTACCGTGCCTCGGGAAGGCTAAAAAGGTCAG ATTATAGTGATGATAATCTTATGCAAATGAAAACAGACCTTATCTAGTTTAAATTAGGGAATTAGGAAATCATGTTATTG CTGGACCCCTTCATCTTCTTCAAAGTTCAAACAACTATTATAGTTTAACAACCAAGGTACTGTAGTTTCTGGCAACTTCC CCAACAGCACCCCAGCATAGTAGGTGAACACCAGATTTAGGTGGTTGTAATATTCATACTGATATTGTAGTCAGCAAATT GCGAAGGAGACTAAGCCACGGTATAAAATAAAGTTATAAAACGAATATTCAATTTTTTTGCTTTTGATTTTGAATAAAAG ATCGGATGCCTGTTTAACTTCCTGAGGGTGTATTGTAAGAGCTTGCGTAGTTGTCGTCAATTTGTCATATGGTGTTTGGA AGTACATAGTTGATCACATGATTTTGATCATAGGAAAATGATTTGTGGGGAAACTTATGAGATAGAAAGGACTAGAAAAG AGAGAAATGATAGATGATTTATGTGGGGTGTGGTTAAAGTTAGGGTGCTTAATAACTGAGCTCGGTGTTCATATTGTTTA TCAATTGATCTTCCAGACTCTAGAGTGAGAATTACTACAATTTAGGAGTCTCTCATAAAGATAGTTTCAACTTAGAATAT TGACCTAAAGAATAGGAAGTCATTATTTGGTTAAAACTTAAAAATCACTAACAAGTAACAACTCTCGGAATTATGTAAAT TGTTAATTGGGTAACTGTTGTCAAATGCCAAATATTGAAATTACAAAGTGTGTTCGTATTAAAGTTGTCTTAAAAGTAAA AGTTCTTTTTGTTAATGGGACAAATTTGTAGCTTTGGAAAAATGTGCATTGGGAAATGTGCTAACCACTTTCAACCCACT TTCAAAGCTTAATCAAACACACCCTAAATCTTAACTCCTTTTTTTTAATGTTAAGGTAGGTGTCACTGATGAACAATGTG AATTATGATTAATATTTTTTGTGTGGAAATATAGAATGGCATTATCTTGTCACATTCAATGGAATTACTCTTGCATCAAG TACCTTCATGTACAATGTTTGTGATCTCCAGTTCTTATATGAGTTTATAATATGTATATCTCTGCAAAAACACTGATCAT AGCTTGTTCCATCTGTCTACTACTTCAGCAAGATGTTGATGGGAAAACATACTATCGATTTGAGTTTATTGCTCAAGCTC CAAACTACACTCGGCATGCTCTCAGCACAGTCTCCGTTAGCAATGGTATGGTTTAGGGTTTAAAGCAGGGGAAATTACAT AATTGACTTTTAATTTTAAAAAGTATTTGTCTTTCCATTTTCATTCACATTTGATTTAATTGTAAAAATATCACTTAGTT TCTTATTTGTTTGCTGGTTGCTTTCCTCTTGTAACAAAAAAAAAAATTGTTTGTTGTTTTAAAAAATGTGCCTATCCTTG TAATGTTGTATCCACAGTGTTACTTTTTCTTAAGAAATGTCCCGGATTTAACTCTTTTGTATGAAATAAAATTTCATTGG AAAAGTTAGTTTCGCCATGATGTAAATGTTCCAAACGCGAACAAAATTGTTTGTCATGGATAATGTTACTTTTCCTTAGA AAAATAAACATTATACTGCAAAAGACAATCAGGCTACAATTTTCTTATTTTTACTCATAAATATTAATTATTATTTGCAG GTAAATTTTACACCCTAACCACAGGAGCAAATGAGAGAAGATGGGACAAGATGAAAGAGAGATTGCAGACAGTCATAGAA TCCTTCAAAATTTCCAATGTTTAATAATGCTCATTTATTGTTACTATATTAGAGATGATAACTCTTCATCAGCGAGAATG TTCATTATTGAGCTTTGTAGTCCCAAGCTTTGTCTGTTTGCAATATAGCAATTTATGAGTAAGTCTTTGAGGTTTGTTAG ATCAGAATTGGTTTTAAGAAGCCATCAACAGACTAAATAGTAAGACTACCCACAATGGTTTCAACATTCAACACCCTCAA CACTCCACTTTTTCTCTTCCCAACACTCCACATCACCTTCTCTCTCCAGTTCAACACTTCATTCAACTTTTACCCACTCC AATGGTTTTTCTTTCAACACCCTACCCCCTACCCCACCACTTTTATTTCATATTTTGATTTAATTTTATATTTTTCTTTT TATGATTTCATAAAATTAAAATTTACGATAAAAATTAAATTAAATAAACTGAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0533900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGTCCCTGCAGAATTCTCCTACACTTCACCGCACCCTCTTCCTCAACTCTTTCCCTCAGAAGCATGGTGCTTCTCG TTCACCTAGAAGAGAAGGCATTTCCTTCACTGTCAAAGCTGCCCATGAACCTTCAGCTTCTTCAGCTGGGTTTCTTTCTC AAGATAGACCAGGGAGGCGCGAAGTGATTGCCATTGGGACTACTGCCCCATTAGTATTTCTGTTCAGCCAAAACTCAAGC TCTTTTGCTGCAGAAAATAAGAAAGGATTTTTGCCAGTTACGGACCAGAAAGATGGATATACATTTATCTACCCTTTCGG GTGGCAGGAAGTATCGATTGAGGGTCAAGATAAGGTGTTCAAAGATGTCATTGAACCGCTGGAAAGCGTCAGTGTTAATA TAATCCCAACAGGCAAACAAAATATTAAAGAATTTGGGCCTCCTCAACAGGTTGGAGAAACTCTGATAAAAAGGGTTTTG GCCCCTCCAAACCAGAAAACGAAGATAATTGAAGCAACAGAGCAAGATGTTGATGGGAAAACATACTATCGATTTGAGTT TATTGCTCAAGCTCCAAACTACACTCGGCATGCTCTCAGCACAGTCTCCGTTAGCAATGGTAAATTTTACACCCTAACCA CAGGAGCAAATGAGAGAAGATGGGACAAGATGAAAGAGAGATTGCAGACAGTCATAGAATCCTTCAAAATTTCCAATGTT TAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0533900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSLQNSPTLHRTLFLNSFPQKHGASRSPRREGISFTVKAAHEPSASSAGFLSQDRPGRREVIAIGTTAPLVFLFSQNSS SFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSIEGQDKVFKDVIEPLESVSVNIIPTGKQNIKEFGPPQQVGETLIKRVL APPNQKTKIIEATEQDVDGKTYYRFEFIAQAPNYTRHALSTVSVSNGKFYTLTTGANERRWDKMKERLQTVIESFKISNV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31407:SF4
1 238 238 6.8E-100 –
PANTHER
PTHR31407
1 238 238 6.8E-100 –
Gene3D
G3DSA:3.40.1000.10
78 238 161 1.6E-52
IPR016123
Pfam
PF01789
89 237 149 8.3E-50
IPR002683
SUPERFAMILY
SSF55724
93 237 145 2.98E-46
IPR016123

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0009523
Cellular component Photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
Subterm of
GO:0009654
Cellular component Photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of
GO:0019898
Cellular component Extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0533900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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