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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0534400 |
Transcript ID | LotjaGi1g1v0534400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi1g1v0534400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106268761..106269789) extracted from Lotus japonicus Gifu genome v1.2.
GTCAATTGAAACAAGCAATTCGTTTATTAGATGAAATGATGAAGAAAAACATCGACCCCAATGTGTATACTTTTAGTATA TTGGTCGATGCTTTGTGCAAGGAAGGGAATGTGAGAGAAGCTAAAAGTGTGTTAGCTATGATGATGAAACTAGGTGTGAA ACTTGATGTTGTTACTTATAATTCTTTGATGGATGGATATTGCTTAGTTAATGAAGTGAATAAAGCCCAAGATGTATTCA ATGCTATGGCTCGGAGGGGAGTGACTCCTAATGTTCGGAGCTACAATATCATGATCAACGGATTATGTAAGATTAAAATG GTGGATGAAGCCTTGAATCTCCTTGCAGAAATGGATTGCAAAAAGATTATTCCTAATACAGTAACCTACAGTTCTCTTAT TGATGGTTTATGCAAAACGGGGAGAGCCTCTCATGCTTGGGAGCTTCTTGAAGAGATGCATGTGAAAGGACAACCGGCCA ATATATTCACTTACAATTCTTTATTGGACGCTTTATGCAAAAGCCATCACGTTGACAAGGCAATTGCACTTATCAAGAAA ATTAAAGATCAGGGTATTCAGCCGGATGTGCTCACATACACAATACTCATAGATGGACTATGTAAAGAAGGAAGACTCAA AGATGCACAAGAGGTTTTTCTGGATCTTGTGATTAAAGGCTATCATCTAACTGTCTATACATATACTGTTATGATCAATG GGCTTTGTAAAGAAGGCTTGTTTGATGAAGCGTTGGCCTTGCTGTCAAAAATGGAAAATGAGGGATGTACTCCTAATGCT ATAACTTTTGAAACTATTATTCATTCACTCTTTGAAAATGGTGAGAATGACAAGGCTGAGAAACTTCTTCGTGAAATGAT TGATAGAGGTCTACTGGAAAAATTATAGATACACACGGAGAAGGAGACGTACATTTTGATTAGTTTGAGGTTTTTATCAG GTTCCAGATTACTCACTACCTGGAGACGCAGGACCAGGGCATGGTATATCGGTGTTAAAGATAGTGAAA
CDS sequence (LotjaGi1g1v0534400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGAAAAACATCGACCCCAATGTGTATACTTTTAGTATATTGGTCGATGCTTTGTGCAAGGAAGGGAATGTGAG AGAAGCTAAAAGTGTGTTAGCTATGATGATGAAACTAGGTGTGAAACTTGATGTTGTTACTTATAATTCTTTGATGGATG GATATTGCTTAGTTAATGAAGTGAATAAAGCCCAAGATGTATTCAATGCTATGGCTCGGAGGGGAGTGACTCCTAATGTT CGGAGCTACAATATCATGATCAACGGATTATGTAAGATTAAAATGGTGGATGAAGCCTTGAATCTCCTTGCAGAAATGGA TTGCAAAAAGATTATTCCTAATACAGTAACCTACAGTTCTCTTATTGATGGTTTATGCAAAACGGGGAGAGCCTCTCATG CTTGGGAGCTTCTTGAAGAGATGCATGTGAAAGGACAACCGGCCAATATATTCACTTACAATTCTTTATTGGACGCTTTA TGCAAAAGCCATCACGTTGACAAGGCAATTGCACTTATCAAGAAAATTAAAGATCAGGGTATTCAGCCGGATGTGCTCAC ATACACAATACTCATAGATGGACTATGTAAAGAAGGAAGACTCAAAGATGCACAAGAGGTTTTTCTGGATCTTGTGATTA AAGGCTATCATCTAACTGTCTATACATATACTGTTATGATCAATGGGCTTTGTAAAGAAGGCTTGTTTGATGAAGCGTTG GCCTTGCTGTCAAAAATGGAAAATGAGGGATGTACTCCTAATGCTATAACTTTTGAAACTATTATTCATTCACTCTTTGA AAATGGTGAGAATGACAAGGCTGAGAAACTTCTTCGTGAAATGATTGATAGAGGTCTACTGGAAAAATTATAG
Protein sequence (LotjaGi1g1v0534400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKKNIDPNVYTFSILVDALCKEGNVREAKSVLAMMMKLGVKLDVVTYNSLMDGYCLVNEVNKAQDVFNAMARRGVTPNV RSYNIMINGLCKIKMVDEALNLLAEMDCKKIIPNTVTYSSLIDGLCKTGRASHAWELLEEMHVKGQPANIFTYNSLLDAL CKSHHVDKAIALIKKIKDQGIQPDVLTYTILIDGLCKEGRLKDAQEVFLDLVIKGYHLTVYTYTVMINGLCKEGLFDEAL ALLSKMENEGCTPNAITFETIIHSLFENGENDKAEKLLREMIDRGLLEKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 73 | 73 | 4.1E-23 | ||
PANTHER | 3 | 175 | 173 | 4.2E-87 | – | |
Pfam | 4 | 36 | 33 | 2.6E-10 | ||
ProSiteProfiles | 9 | 43 | 35 | 11.762 | ||
TIGRFAM | 11 | 45 | 35 | 9.0E-9 | ||
Pfam | 44 | 92 | 49 | 1.9E-19 | ||
ProSiteProfiles | 44 | 78 | 35 | 12.967 | ||
TIGRFAM | 46 | 80 | 35 | 4.1E-8 | ||
Gene3D | 74 | 143 | 70 | 3.0E-24 | ||
ProSiteProfiles | 79 | 113 | 35 | 12.047 | ||
TIGRFAM | 82 | 115 | 34 | 1.3E-9 | ||
Pfam | 111 | 141 | 31 | 1.2E-11 | ||
ProSiteProfiles | 114 | 148 | 35 | 12.233 | ||
TIGRFAM | 116 | 145 | 30 | 1.5E-8 | ||
Gene3D | 144 | 211 | 68 | 1.7E-22 | ||
ProSiteProfiles | 149 | 183 | 35 | 12.748 | ||
PANTHER | 149 | 285 | 137 | 4.2E-87 | – | |
Pfam | 149 | 197 | 49 | 1.6E-17 | ||
TIGRFAM | 151 | 185 | 35 | 5.0E-9 | ||
ProSiteProfiles | 184 | 218 | 35 | 11.444 | ||
TIGRFAM | 187 | 217 | 31 | 1.5E-5 | ||
Gene3D | 212 | 289 | 78 | 2.5E-22 | ||
Pfam | 219 | 265 | 47 | 3.5E-14 | ||
ProSiteProfiles | 219 | 253 | 35 | 13.866 | ||
TIGRFAM | 221 | 255 | 35 | 6.5E-12 | ||
ProSiteProfiles | 254 | 288 | 35 | 10.337 | ||
TIGRFAM | 256 | 286 | 31 | 6.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0534400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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