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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0539300 |
| Transcript ID | LotjaGi1g1v0539300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT2G39518.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T1Z6|CSPLC_SOYBN CASP-like protein 4D1; TrEMBL-Plants: tr|I3SJZ7|I3SJZ7_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0539300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106788151..106789834) extracted from Lotus japonicus Gifu genome v1.2.
GAGGAACTAGCTAACTCTAGGATGTAGATGAACATCATTAATTCTCTTTTGCGGGGAAGATATTTGTGTGTGTGTGAGTT GAATAAAAAAAGATCAACTTGGCCAATTGGCTTTCTCCTTAATAAACGTGAAGAGAACAACTCCATGTTATAAAAGGCCA GAAGTTACACCAAAATTTTCTTGAGAATTACAAGCTTAATTTTGATTTTGATTACTAAAAAAGATGGCTGAGACCGCCGA TAGCAGTAGCAAACCCTCAAGCTCCACAGTTTCAAGAACTGTCCTTCTCCTTATGAGGGTCTTAACATTTGTATTCCTTC TAATTGCTCTCATACTCCTAGCTGCAAACAAGGAAACTGAAGAAGACACAAGTAGTGGTGACTCTGCAGAATTCAAGTTC AATGATTTTCGTGCTTTTAGGTAAGAAACATCTCTGTCAGCAAGATTACGTTTGCAAAAGCTTATTTGAACTTATCTCAA ATGTTCGTTCGAACTCATAAAAAGGATTTATCGCTTATAAACTCATTTGAACTTATTTTCATGCTTTACATATTAGTTTA TGAATCAACGTTTAAAATCAGAATGTTTTGTTCTTTTCTTCTTTATTTAACAAGCTACAATAAATTTTGAAAATGCAGAT ACATGATGGCCACAATAGTGATTGGGTTTGCATATAACCTCCTGCAAATGGCACTCTCAATCTTCACCGTGGTCTCAGGA AACCGTATACTAAACGGCAATGTTGGTTATCTGTTTGATTTCTTTGGTGACAAGGTACATATTTAATACTTGTGTACAAG TTACGTTTATGGAATAATTAATGTTGTACCACAAACTCAATATTAATTTTAGAGTGATTATATACATACAAATTTTTCAC AACACCCTTCGAACATACGCTTTTACGAAAGTTTTTTAACTGCCACAACATTTTGTAGCAACTAAAAAAATGCTACAAAA GCGTATGTCTGAAGGGTGTTACCGGAAATGAAATGTCTGTCAATTATTTTCGTTAATTTTGTAATTTGTAAACCTTAATT GATTTTTTTCCTTGAACAGATCATGTCATTCGTTCTACTTTCTGGTTCAGCTGCTGGATTTGGTGCCTCTGAAGATCTGC ACATAATCTTCAAAAACGCAGAACTTCCCTTCAACGTCTATTTTGCAAAGGCAAATGCCTCAGCTAGCCTTCTTCTTTTT GGATTCATGTGCACTGCCATTGCATCAATTTTCACTTCATTTGCTTTGCCAAAGAAAGCTTAGCATGCAGCTTGATGCAG AAAATTAATGATGCTAGCTCTCTTGTATGATAATCCTTTCTGCGCTTCTCAAGTTTGATTAGATCGATTCTTGTGCGGTT GTGCCTTGTCGTGGATTTGTATATCTTCCAAGTTTTCCTTCCAATTGTACTTGTATTAATTTTTTAATAGAATGGACTTT TCTGTATTTCCCTTTTGTGTTGCTTCTTGTAATATGTATACTCTTATTAATATATAATAATGGGTTAAAAACTATAACCG TCCCTGAACTTTGAGCGAGTTTTGAAAACCGTCCCTCGCCGAAAAATTATCTGAAAACCATCCTCAGACTTTGAAAAAAA AATTTGACCCGTCCCTCCGGCCAACGCTGACATGTCCTTCCACGTCAATTAATGAGATCTGACGTGGAAATTTTTTTTTT GAAT
CDS sequence (LotjaGi1g1v0539300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGACCGCCGATAGCAGTAGCAAACCCTCAAGCTCCACAGTTTCAAGAACTGTCCTTCTCCTTATGAGGGTCTT AACATTTGTATTCCTTCTAATTGCTCTCATACTCCTAGCTGCAAACAAGGAAACTGAAGAAGACACAAGTAGTGGTGACT CTGCAGAATTCAAGTTCAATGATTTTCGTGCTTTTAGATACATGATGGCCACAATAGTGATTGGGTTTGCATATAACCTC CTGCAAATGGCACTCTCAATCTTCACCGTGGTCTCAGGAAACCGTATACTAAACGGCAATGTTGGTTATCTGTTTGATTT CTTTGGTGACAAGATCATGTCATTCGTTCTACTTTCTGGTTCAGCTGCTGGATTTGGTGCCTCTGAAGATCTGCACATAA TCTTCAAAAACGCAGAACTTCCCTTCAACGTCTATTTTGCAAAGGCAAATGCCTCAGCTAGCCTTCTTCTTTTTGGATTC ATGTGCACTGCCATTGCATCAATTTTCACTTCATTTGCTTTGCCAAAGAAAGCTTAG
Protein sequence (LotjaGi1g1v0539300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETADSSSKPSSSTVSRTVLLLMRVLTFVFLLIALILLAANKETEEDTSSGDSAEFKFNDFRAFRYMMATIVIGFAYNL LQMALSIFTVVSGNRILNGNVGYLFDFFGDKIMSFVLLSGSAAGFGASEDLHIIFKNAELPFNVYFAKANASASLLLFGF MCTAIASIFTSFALPKKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 12 | 177 | 166 | 9.9E-56 | – | |
| PANTHER | 12 | 177 | 166 | 9.9E-56 | – | |
| Pfam | 17 | 161 | 145 | 3.4E-22 | ||
| Phobius | 20 | 41 | 22 | - | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| TIGRFAM | 22 | 125 | 104 | 2.9E-12 | ||
| Phobius | 42 | 66 | 25 | - | – | |
| Phobius | 67 | 91 | 25 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 92 | 111 | 20 | - | – | |
| Phobius | 112 | 135 | 24 | - | – | |
| Phobius | 136 | 154 | 19 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 155 | 174 | 20 | - | – | |
| Phobius | 175 | 178 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0539300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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