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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0548800 |
| Transcript ID | LotjaGi1g1v0548800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic; TrEMBL-Plants: tr|G7KUA7|G7KUA7_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi1g1v0548800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107868474..107870810) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAGAAATTGCACTCACCTCCCTGAGATTTGATATTATTGTACTAACATCCTCTATAATTTCCCCTTTCCACCCTCTG CAAATTCTTCGAAGAAATGAAGAAGGAACATGGTGGAACAAGGAATCGACAGTGACTGTGTGTAGCAAGAGCTCAACAGA ACAACCAAAACCACTGAATTTGGAATGCTTTGTAGGACTAGATACGCTGTTCTTTCTCATGTTCTCAAGCCTTCTGCATC TTTTCTCCACTCTTCATCTTCCCGCAAAACTCACCCTAATGTCACAAACCCTGAAACAACTTCTTCAAATTCCACAAAAC CCACTTCGCCCCTTGCTCCATGTTCACGTCTTTCACGCAAAACAACCCCTCCTTCAAGTGTTTCTTCCCTTTACTCTCTG CTTTCTGACCTTGTCTCTCTCCCAGGTGACACTGCCATTGATCATGTTTTGGATCGTTACAAGGGTGATTTGAGCTCCAA CTTTGTTCTTCGGGTCTTGATGAGTTACCAGCACTTGGGCAGAGCCAAAACCTTGAATTTCTTCTCATGGGCAGGGACCC AGATGGGGTTTCAGTTTGATGACTCTGTGGTTGAGTATATGGCTGATTTCTTGGGTAGGAGGAAGCTTTTTGATGATATG AAGTGTTTGTTGATGACTGTGGCATCTCAAAAGGGTAAAGTTTCTCCTAAGGCAATGTCAATTTGTATTAGATTTTTGGG TAGGCATGGTAGGATTCATGAAGCACTGTCATTGTTTGAGGAAATGGAAACTGTGTTTGGGTGTAAGCCTGATAACCTTG TGTTTAACAATGTGCTTTATGTGCTCTGCAAGAAGCAGTCATCTGAGGAGACGATTGAGCTTGCGCTTAGGATTTTCCAC AAGATGGAATCTCCTGATACATATTCCTGTAGTAACACTATTGTTGGTTTGTGTAGACTTGGTAGATTAGAGGCAGCTCT TGAAATTTTCAGCCAAATGAACAAGATTGGTGTGTTACCAACTCGTTCTGCGGTGAACATGCTTATTGGGGAGCTGTGCT CATTGAGTGAAAAAAAAGGGTCTGTTGAGAAGGTAAGAGTGAGGAATACCCGTAGACCGTGTACTATATTAGTTCCTAAT ATGGGAGGAAATAGTGGTGCAATTCAGCCTGCTGTTGAAGTGTTTTGGGCAGTTTTTAATTCTGGCTTATTGCCAAGTAC TTTTGTTGTAGTCAAGCTTATGTCAGAGCTTTGTCGCTTAGGTCAGACAGAGGAAGCTGTAAAATTGTTGAGGATTGTTG AGGAAAGGAAGCTAACATGTGTTGAAGAGGGATATGCTATTGTTATGAAGGCATTGTGTGATCACTGTCAAGTTGAGGAA GCTAGTAATCTGTTTGGGAGAATGTTAGCATGTGGCTTGAAGCCAAAGTTGGGTGTTTACAATTCTGTTATATCCATGCT ATGTACATTGGGAAATTTGGACCATGCTATGGGGGTCTTTGAACTCATGAACAAGAAAAGATGCCTTCCTGATAATTTAA CCTACACTGCTTTGATCCATGCTCATGGTAAGGTTAAGAACTGGAAAGTTGCTTATGACTTGTTAATGGAAATGTTGGGT TTGGGCTGGATTCCAGAGCTTCAGACTTACAATTTAGTGGACAATCTTTTGAGAGAACACGATCGCTCGGATCTATGCCT CAAACTGGAAAGGAAATTGGAGAACCATCAGTTGCAGAAGCTGTGCAAGCTAGGTCAACTAGATGCTGCTTATGAGAAAG CAAAATCAATGCTGGAAAAGGGTATTCATTTATCAGCTTATGCTAGAGACACATTTGAGCATGTGTTCCAGAAGAACGGC AAGTTAAAAATAGCACGTCAGTTACTGGAAACGACTCGGAGAGTTCAGGAGCCTGAGGAAACTAACAGAACTTGACTAGT TATTAGCCAAAAAATATATATTCCTATATTGTTGGAACAATTTTGGATTTTATAGTTGACACTTTTTAATAATTTAATAC AATTCTTTTCTAAATTGTACTCTGAAGTCTTACATTGTCCAGTACAGAACATTCTAAAGTCTTCTGTGTTTACTAAAGTA CTTTAAAGTTTAGCTAAATGACAGAAAGTTCATAAACCTATAATTCTAGATCCTTTTCCATGCAAGCTTACATTATTCCA ACTTAGTTTGCTCCCCAATTTGTCACTTGCACAATGATGTCTGTTATAATACTAAACTGCAATTAAGTTCTGAGTGTATG CTTTTTCTGTACTTCTGTACTGTGGCAGAATTCTTCTCTATTAGACTATCGCAACATTTCTTCATTGTCTGTTGATTTTG ATGGTATTAGTTTCTCC
CDS sequence (LotjaGi1g1v0548800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTGTAGGACTAGATACGCTGTTCTTTCTCATGTTCTCAAGCCTTCTGCATCTTTTCTCCACTCTTCATCTTCCCG CAAAACTCACCCTAATGTCACAAACCCTGAAACAACTTCTTCAAATTCCACAAAACCCACTTCGCCCCTTGCTCCATGTT CACGTCTTTCACGCAAAACAACCCCTCCTTCAAGTGTTTCTTCCCTTTACTCTCTGCTTTCTGACCTTGTCTCTCTCCCA GGTGACACTGCCATTGATCATGTTTTGGATCGTTACAAGGGTGATTTGAGCTCCAACTTTGTTCTTCGGGTCTTGATGAG TTACCAGCACTTGGGCAGAGCCAAAACCTTGAATTTCTTCTCATGGGCAGGGACCCAGATGGGGTTTCAGTTTGATGACT CTGTGGTTGAGTATATGGCTGATTTCTTGGGTAGGAGGAAGCTTTTTGATGATATGAAGTGTTTGTTGATGACTGTGGCA TCTCAAAAGGGTAAAGTTTCTCCTAAGGCAATGTCAATTTGTATTAGATTTTTGGGTAGGCATGGTAGGATTCATGAAGC ACTGTCATTGTTTGAGGAAATGGAAACTGTGTTTGGGTGTAAGCCTGATAACCTTGTGTTTAACAATGTGCTTTATGTGC TCTGCAAGAAGCAGTCATCTGAGGAGACGATTGAGCTTGCGCTTAGGATTTTCCACAAGATGGAATCTCCTGATACATAT TCCTGTAGTAACACTATTGTTGGTTTGTGTAGACTTGGTAGATTAGAGGCAGCTCTTGAAATTTTCAGCCAAATGAACAA GATTGGTGTGTTACCAACTCGTTCTGCGGTGAACATGCTTATTGGGGAGCTGTGCTCATTGAGTGAAAAAAAAGGGTCTG TTGAGAAGGTAAGAGTGAGGAATACCCGTAGACCGTGTACTATATTAGTTCCTAATATGGGAGGAAATAGTGGTGCAATT CAGCCTGCTGTTGAAGTGTTTTGGGCAGTTTTTAATTCTGGCTTATTGCCAAGTACTTTTGTTGTAGTCAAGCTTATGTC AGAGCTTTGTCGCTTAGGTCAGACAGAGGAAGCTGTAAAATTGTTGAGGATTGTTGAGGAAAGGAAGCTAACATGTGTTG AAGAGGGATATGCTATTGTTATGAAGGCATTGTGTGATCACTGTCAAGTTGAGGAAGCTAGTAATCTGTTTGGGAGAATG TTAGCATGTGGCTTGAAGCCAAAGTTGGGTGTTTACAATTCTGTTATATCCATGCTATGTACATTGGGAAATTTGGACCA TGCTATGGGGGTCTTTGAACTCATGAACAAGAAAAGATGCCTTCCTGATAATTTAACCTACACTGCTTTGATCCATGCTC ATGGTAAGGTTAAGAACTGGAAAGTTGCTTATGACTTGTTAATGGAAATGTTGGGTTTGGGCTGGATTCCAGAGCTTCAG ACTTACAATTTAGTGGACAATCTTTTGAGAGAACACGATCGCTCGGATCTATGCCTCAAACTGGAAAGGAAATTGGAGAA CCATCAGTTGCAGAAGCTGTGCAAGCTAGGTCAACTAGATGCTGCTTATGAGAAAGCAAAATCAATGCTGGAAAAGGGTA TTCATTTATCAGCTTATGCTAGAGACACATTTGAGCATGTGTTCCAGAAGAACGGCAAGTTAAAAATAGCACGTCAGTTA CTGGAAACGACTCGGAGAGTTCAGGAGCCTGAGGAAACTAACAGAACTTGA
Protein sequence (LotjaGi1g1v0548800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCRTRYAVLSHVLKPSASFLHSSSSRKTHPNVTNPETTSSNSTKPTSPLAPCSRLSRKTTPPSSVSSLYSLLSDLVSLP GDTAIDHVLDRYKGDLSSNFVLRVLMSYQHLGRAKTLNFFSWAGTQMGFQFDDSVVEYMADFLGRRKLFDDMKCLLMTVA SQKGKVSPKAMSICIRFLGRHGRIHEALSLFEEMETVFGCKPDNLVFNNVLYVLCKKQSSEETIELALRIFHKMESPDTY SCSNTIVGLCRLGRLEAALEIFSQMNKIGVLPTRSAVNMLIGELCSLSEKKGSVEKVRVRNTRRPCTILVPNMGGNSGAI QPAVEVFWAVFNSGLLPSTFVVVKLMSELCRLGQTEEAVKLLRIVEERKLTCVEEGYAIVMKALCDHCQVEEASNLFGRM LACGLKPKLGVYNSVISMLCTLGNLDHAMGVFELMNKKRCLPDNLTYTALIHAHGKVKNWKVAYDLLMEMLGLGWIPELQ TYNLVDNLLREHDRSDLCLKLERKLENHQLQKLCKLGQLDAAYEKAKSMLEKGIHLSAYARDTFEHVFQKNGKLKIARQL LETTRRVQEPEETNRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| MobiDBLite | 21 | 64 | 44 | - | – | |
| PANTHER | 128 | 289 | 162 | 6.3E-54 | – | |
| Gene3D | 154 | 300 | 147 | 1.1E-25 | ||
| ProSiteProfiles | 167 | 197 | 31 | 7.563 | ||
| Pfam | 172 | 195 | 24 | 0.0012 | ||
| TIGRFAM | 172 | 203 | 32 | 3.6E-6 | ||
| ProSiteProfiles | 203 | 237 | 35 | 5.908 | ||
| Pfam | 237 | 286 | 50 | 4.3E-7 | ||
| ProSiteProfiles | 238 | 272 | 35 | 11.301 | ||
| ProSiteProfiles | 302 | 337 | 36 | 5.185 | ||
| Gene3D | 312 | 512 | 201 | 5.9E-35 | ||
| PANTHER | 321 | 502 | 182 | 6.3E-54 | – | |
| ProSiteProfiles | 338 | 372 | 35 | 7.596 | ||
| Pfam | 345 | 368 | 24 | 0.53 | ||
| ProSiteProfiles | 373 | 407 | 35 | 9.405 | ||
| TIGRFAM | 377 | 407 | 31 | 2.1E-5 | ||
| Pfam | 378 | 405 | 28 | 0.025 | ||
| ProSiteProfiles | 408 | 442 | 35 | 10.446 | ||
| TIGRFAM | 411 | 443 | 33 | 6.0E-7 | ||
| Pfam | 411 | 454 | 44 | 2.4E-11 | ||
| ProSiteProfiles | 443 | 477 | 35 | 10.271 | ||
| TIGRFAM | 446 | 477 | 32 | 5.9E-5 | ||
| ProSiteProfiles | 502 | 536 | 35 | 6.708 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0548800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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