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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0551800 |
| Transcript ID | LotjaGi1g1v0551800.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14-3-3 family protein; TAIR: AT3G02520.1 general regulatory factor 7; Swiss-Prot: sp|P42652|14334_SOLLC 14-3-3 protein 4; TrEMBL-Plants: tr|I3T321|I3T321_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0551800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108313140..108316264) extracted from Lotus japonicus Gifu genome v1.2.
CACGACCACGATCAACGCAAACTCAATTCTATAGTCAACGCCAACACAGAATCTCCGTTCACCTTCTCATTGGCTTACCA TTCTCTCTCTCCCCTCCTCCTATTTAAACGCCCTTCCTTCCCCACTTCCTCTGTTTGTTTCCGTTACTTCTCTCTCTTCA CAGGTTCGTTCCTCTTCTCTCTCTTCATCATCATCACAGTTTCAGTTTCAGAGTTTCATCTCTTTTTATTAGGGTTTCGA TTACGCTACATTTGTTCCTCTCTCTCTTGCAGATCTGAATATTCCACTCTAGGTTTTTGTTTTCTCTACTCGCTTCAATT TTTTCACTCGTCATGCAATCTTATTTTGTGATTCTCGTTTCATCCACTGGATTCATGTGTATCGCTTATTGATTTCGCTA TCGCTATCGAATTCTAAACTTGTTTGTTTGCCGGAAAAACTCCAGAAACCGATCTCCAGAATTTGAAATTTGAAAACTAG GCTATGAATCATTGAATTGAATTGAATTCGACTTTTTGTTTTTTGTGAATTCTAGAGTTTGCAGGATTACTAGGCAATGA ATCTCACTTTTTTCGTTTTGCTGGCTTGATTTGGCTTAATTTCTCTGCGCTATCGAATCCCTTACTTGTTTTTGTTTCCA TGGAAAATTCGAGTAATGGATCTGGAGATTATGAATTTGTTGAGTTTCGCGAGTTGCAACATTATTAGGGAATGAATCTC ACTTTTTGTTGCTGTGAATTTTATATTTTGCAGGATTTAGTGTTGAATTTCGGCGAAAAAAATGGCGGCTGCAGATTCTT CGTCTCCCCGTGAGGAGAATGTTTACCTGGCCAAGTTGGCGGAGCAGGCAGAGCGGTATGAGGAGATGGTGGAGTTCATG GAGAAGGTTGCCAAGTCGGTGGACGCTGGGGAGTTGACGGTGGAGGAGAGGAACTTACTCTCTGTGGCGTACAAGAATGT GATTGGGGCGAGGAGGGCTTCCTGGAGGATCATCTCCTCCATTGAGCAGAAGGAGGAGAGCAGAGGGAATGAGGACCATG TCTCTGTTATCAAGGAGTACAGGGGAAAGATTGAGGCTGAGCTCAGCAAGATCTGTGATGGAATTTTGAATCTCCTTGAG TCCAATCTCATACCATCTGCTGCGGCCCCTGAGTCTAAGGTGTTTTACCTTAAAATGAAAGGTGACTACCACAGGTACCT TGCTGAGTTCAAGACTGGGGCAGAGAGAAAAGAAGCTGCAGAAAGTACTTTGTTAGCTTACAAATCAGCTCAGGTATACA TATATTCTATAGCTGTATATACATCCTACATTCATCCATAGATAGATGCTTGTATAAGTAGTGGTTACTTTCGCTACACA CGCTAAACTCAATTTGTGGTTAATTGATCCAGGATATTGCTCTTGCTGAACTTGCCCCCACCCACCCGATTAGGCTCGGT CTTGCACTCAACTTTTCTGTGTTCTACTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCGAAGCAGGTATC TTTACTTGCTATCTGATATGAAGGCTTTTTTTTTAATTCCTGGCTGCTGTATCTTAATTGATCATCGAGGAAGAAATTAT CTTTATGTGTGGCTGAGTATGGACCGTAGACCATAGTGGGAATCTGTTGTGTCCATCCACTTGCATCGAAAAGTTTGTTT TTGAACAGAACTATTGGAAATTGCTTATGGAGTCCCAATAAATATACGCTGGACTTTGCAGCCTAATCTATTATATGAAT TGAAGTTATATAATTTTATTAATTTTGTTCAGGAGAATTTTAGAATTTAATTCTTCTTTAAGAGATTGAACTTAGTACAG TGTAACTGATTTCAATCCCGTTCATTCCTTAAATCATATTACTATTTCTTTATTTGACATGACTAATGTATTCTGTACTT TACTTAGCATTTGGTACTTCATGTAATGATGGATCTAAAAGCTCCGTGATGGTTTATTTGTTTATTTCATCTATGTGTTC TCTTCTGTTTAGTAACCTATGAAAAATGCTTTACTGTGGCAGGCATTTGATGAGGCGATTTCTGAGCTTGACACATTGGG TGAAGAGTCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGAGATAATCTGACTTTGTGGACGTCCGACATTACGG TATCTCTCTCTACCTTCCCTCGCATGTTGTGTACACATATACTAAATATCTCTTCTTTAACATTGTTGACGAACCTTGAT GGCTGAACAAAATTGAGTTCTTTCATGAGGAGAAAGTATAAACCCCCTTTTTTTAGTAATAGTAATGCTTGTCCCTTCGA AGAAAGTTTGAGATAAAACTTGTTTGGTTGTAAAAACCGTAAGTTGTCTGAGTATCCTTATGTCTGGATCGTCATTTTTG TCTTTGTTGTTGCAATGCAGTAGTCTAGGTATTAGTTTTTGAGCTTAGTGGGACAAATTAAATTTTATACTCATACTTGC CTAAACAATGACAAACATTGAGCATATATTTTTGTGAAGAATCCATTACTTGCCTATGCTTTCTACGTCCGATGATAGTA GCTTTTAGATGTTAGAGTAATATAGGACTAGGACTTGTCTTCTTTTCCCAATATTCTGTTAGTTCTCATTGCTTCGAGAT AGTATTTGTTTTTCTGAAATTTTGATTGAACTGCCTCTTAATATTTCAGGATGATGCTGGAGATGAGATCAAGGAAACAT CTAAGCCACAATCAGGCGATGGGGAGCAATAATGTGGTAGTTGGCGGCATGTGTATTACCCTTAATATAGATTCCATGTT GGGTTCCATAGTAGGATTTTAGTTGTGGATTTCATGATTTCAAGTGCAGTTTGCCCTTGGGATTACAATGTTTTAATGGA CCATTTATGTGTTTTATTGATGAGAAGAATATGCTTGGTGGTTTAGTGATTTATAATTTTTTTATTGTTGGCTGTTTATG AATGCTTAGTGTTGTTGTGAAGTCCTTTTTGCATACCTTTCTGAATAACTTAAGGAGCACTACTGAGGCCAATAAGATTA TTTCTTTCTAAAGGTGTAATGTGACTCCTAAATTTTGTGGTTACTGGTTGGTAAACTCAGTTTACTTTATGTACCAAAAA AAAAC
CDS sequence (LotjaGi1g1v0551800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTGCAGATTCTTCGTCTCCCCGTGAGGAGAATGTTTACCTGGCCAAGTTGGCGGAGCAGGCAGAGCGGTATGA GGAGATGGTGGAGTTCATGGAGAAGGTTGCCAAGTCGGTGGACGCTGGGGAGTTGACGGTGGAGGAGAGGAACTTACTCT CTGTGGCGTACAAGAATGTGATTGGGGCGAGGAGGGCTTCCTGGAGGATCATCTCCTCCATTGAGCAGAAGGAGGAGAGC AGAGGGAATGAGGACCATGTCTCTGTTATCAAGGAGTACAGGGGAAAGATTGAGGCTGAGCTCAGCAAGATCTGTGATGG AATTTTGAATCTCCTTGAGTCCAATCTCATACCATCTGCTGCGGCCCCTGAGTCTAAGGTGTTTTACCTTAAAATGAAAG GTGACTACCACAGGTACCTTGCTGAGTTCAAGACTGGGGCAGAGAGAAAAGAAGCTGCAGAAAGTACTTTGTTAGCTTAC AAATCAGCTCAGGATATTGCTCTTGCTGAACTTGCCCCCACCCACCCGATTAGGCTCGGTCTTGCACTCAACTTTTCTGT GTTCTACTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCGAAGCAGGCATTTGATGAGGCGATTTCTGAGC TTGACACATTGGGTGAAGAGTCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGAGATAATCTGACTTTGTGGACG TCCGACATTACGGATGATGCTGGAGATGAGATCAAGGAAACATCTAAGCCACAATCAGGCGATGGGGAGCAATAA
Protein sequence (LotjaGi1g1v0551800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAADSSSPREENVYLAKLAEQAERYEEMVEFMEKVAKSVDAGELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES RGNEDHVSVIKEYRGKIEAELSKICDGILNLLESNLIPSAAAPESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAY KSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWT SDITDDAGDEIKETSKPQSGDGEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 242 | 241 | 4.9E-129 | ||
| PIRSF | 4 | 252 | 249 | 1.1E-118 | ||
| PANTHER | 7 | 264 | 258 | 1.2E-164 | – | |
| PANTHER | 7 | 264 | 258 | 1.2E-164 | ||
| SUPERFAMILY | 9 | 242 | 234 | 4.32E-105 | ||
| SMART | 10 | 253 | 244 | 3.6E-208 | ||
| Pfam | 16 | 240 | 225 | 6.8E-103 | ||
| Coils | 16 | 36 | 21 | - | – | |
| PRINTS | 44 | 73 | 30 | 6.4E-88 | ||
| ProSitePatterns | 50 | 60 | 11 | - | ||
| PRINTS | 93 | 117 | 25 | 6.4E-88 | ||
| PRINTS | 124 | 146 | 23 | 6.4E-88 | ||
| PRINTS | 159 | 185 | 27 | 6.4E-88 | ||
| PRINTS | 186 | 212 | 27 | 6.4E-88 | ||
| PRINTS | 213 | 242 | 30 | 6.4E-88 | ||
| ProSitePatterns | 222 | 241 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0551800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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