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LotjaGi1g1v0552500.1

Overview

Field Value
Gene ID LotjaGi1g1v0552500
Transcript ID LotjaGi1g1v0552500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Transaldolase; TAIR: AT5G13420.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|A9WT40|TAL_RENSM Transaldolase; TrEMBL-Plants: tr|I1KZJ0|I1KZJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0552500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:108412362..108416605) extracted from Lotus japonicus Gifu genome v1.2.

TGCTGAGAAAGAAAGCTATCGTGAATTTCCCATATTACCCCTTTGTCACCCTCGTTTGTGCTGCCGAGTGAGTGGCTTTT GGGTCAACCCAAAAGGTGCCACCAACTTTGTGTCTACCAAACCAAACCAAACCAACTCTCACTCTCTTATATAAAATTGA TGAAATTAAACCAACTCTCACTCTCACCAACACCAACCAGCCACCACCAAACACCGCATCGCATCGCTGACTTCGAATTT TCCGATGGCTTCCATTTCAAAGCTCACAACGCCAACACCAAACCCAGCCTTATCACAATCGCTTCGAACCCGATCTTCTC AGAACTGCTTCCTCGCTTTCCAGCTACCTTCCTCAACCAATTTCAAAACCAACCTCTCCGCTTCCTTCTTTGCCCCTCGC TCCCACCCTCTTCAAAACACTTTGCGGTAAGTCCTCCCTCTCTCTCTCTCTCTCTCTCTCTGTGATCGCTGTTTCTTGCA TGTTTTCATTTCGTTTTGTGATCTCACATCTCATGCTGATGCAGTATTGATTGTAATTGGTTGTTTTTATTTTATTTTAT TTATTTATTTACCTGTTTTAGTTGATAAGAACTGTGATTGTTTTCGTTACTATCGATGCCTCTTGTTAGGGCGTGTTTGG TTGGTTGAGACTTGAGTAGCTGAAAGTTGGTGGGTGAAAAATTAAAGCACATGTTACAAATTTTGAATACTAGTTGTAGG AAAGTTGATTGTTAGGGAAACATGTTCTGATTTTGATTTTGACTTGTTTTTTTTTTTTTGTTTTAGCTAGAAGTGATTCT CATTTCAAAATTTTGCTTCTAGATTATTGTTTTCTGCTATGCTATTGCTAAGCTTCGCGTAGTTGTGTTACTATGAATTC GGATTTATGGTAGCCTTATTCGTGCTAGCATATTGTATAGGTAGTATAAATTTCAGTGTATGGATATGTTGACTGCATGG TGAACCCGTTAATGATTTATTGAAACTAAGCTCTTGTTATTGACTGATGAGTATGAGGTTTTGTTTTTGTTTTTTACATG GCATTAATAGGGAGGTAACGGTTTTTATGGTTGTTGTGTCTGTGCAGGATTAGATGCTCCCAAACAGGTGGAAATGGAAG TCCTGCAAAGAGGACAACACTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCG TTACGGATCTGATTCCTCTTATTGAGAGTGGTGTTAGAGGAGTCACTAGCAACCCTGCGGTAATAATATTTTCTTTTTAG TTAGCATTATCCATGTGTGAAGATGATTATCCTGGGAACAATGATGCAGAAATTAATACAGATTACATACGTTCCAAACA TTGTTTTGAGTTGTAACTTTTACTTTTATATAATATTGGAAGTTGTTACTCTAACAAGCTGTCTGTATGTGATTGCAGAT CTTTCAGAAAGCTATCTCTACTTCAAATGCTTACAATGATCAGTTCAGGTACTATCAATATCTTTTACTAACCCTGAAAT TTCTTCTTTTGCAAACTTGAAAAGCAGTATAGTGGACAGTGGACTGAACTGTCTATTCATCCTGACACGGGTCATGGTTG TCTATCTGTAGTGTGTATATTCAGTGTATTACTGTTTAGCAATGCTTGTCTCTTAATGAAGTATGTTTATAGCTGAAGAT ATTTCCTCTCCAGCTTTTGTAGCTAATGACATACTACTTAATCCTCCAGGGAACTTGTGCAAGCAGGGAAAGACATTGAG AGTGCATATTGGGAACTTGTAGTGAAAGACATTCAAGATGCTTGCAAACTATTTGAATCAATCTATGATGAAACAGATGG TTCTGATGGCTATGTTTCTGTTGAAGTTTCTCCTAGGCTCGCTGATGATACCGAAGGAACCATAGAAGCTGCAAAATGGC TCCATAAAGTGGTTGCTCGCCCCAATGCGTATATTAAGATACCAGCTACTGCTGCATGTGTCCCTTCAATTAAGGAAGTT ATTGCTAATGGGATAAGTGTGAATGTGACTGTAAGTTTGTGCTACATCCTTTCATATGTTCTCCAAATTAAAAAAATCAA TATCATTTTGTGTTATTGTATGATATTCTAGGTTATGTTTTTAGCTACTTGATAAGTAATCCTAGATGTTGCCAGTCAAC ACAGCATTAATGGGTTAGTAAGCTTATGCTGATTATAAGTGAGGAAGGTTGTATTAGGAAGTTGAGAAGCTCATATTCTC TTTTACTATGTCATCTGACTTGATCTCTATTACTATTTACTGGTGTCTGAATATATGTTTCTGGTACTTGTATCCCCAGC TGATATTCTCTCTTGAAAGATATGAAGCTGTAATTGATGCTTACATTGAAGGTCTTGAGGCATCTGGGCTAAATGACCTC TCCAGAGTCACCAGTGTTGCCTCTTTCTTTGTCAGTCGTGTAGACACTCTCATTGACAAGATCCTTGAGAAAATTGGCAC ACCAGAGGCCCTTAATCTACGTGGCAAGGTAACTGCTCATAGTTTGCCAATTCTGATTTATTACACCTCTAGATATCAAA TATGCTCTGGTCATGACGCATTATATTTTATAGGCAGCAGTAGCCCAAGCAGCTCTGGCTTACCAGCTCTACCAAAGGAA ATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTGCTCTGGGCCTCCACCAGTGTCA AGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCTGACACGGTAAGCTGTCGTATTTTTCACATG TTCCATCTGTTGCAGTTATCAATGGAGTTGATCTTAAGGAACTAGTATTTGGCCTTGCCTGTTTTTTAAACACTTGGAAA TAAAATGTTTCCTAATCTTTGAGCTTGAGGATATGTTTGTTGTGTCTCATAGCATTACCTTCTTACTTCACAGGTTTCAA CCATGCCGGACCAAGCGCTTCAAGCGTTTATCGATCATGGTACTGTATCCAGGACAATAGACTCAAATGCATCTGAAGCT GAAGGAATATACAACGCTCTCCAGAAAGTGGGTGTTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGA ATCATTTAAGAAGAGCTTTGATAGCCTCCTGGATTCCCTGCAAGAGAAAGCTAACTCTCTTAAGTTGGTCAGTCTCTGAA GTGAGAATGTTATAGTGAGTAATGTTTTATATGGTGCCATTTATGGATTAATAAAAGACATTGGCTGTGAGTTATGTCAT AAGTGTGGTGCCATTCATGGGATCATTTAAACGATGGTGAAACATTATAAATTGGACATTGTCCGCTTCGAAGCGTTTTG TTTCGTCCCATATATCATTATGCGGTTTTAGAAGAAGCGTTGTGTTTCAAATATTGTACTTTAGTTTAAGTAATATTGAG GAAGGATCGAAATACATCACTCTAACTCTTGCACTGGTACACTTATTTTCAACCGTTGATGTGTTCAAATCTAATGGTTC TAAAATTTTAAAATTAGAGAATTGATTGCTCTAATACTAATACTTGGTTTAGACTACTGATTCATTTGTGCTTTGTCTCC CTCCAGGCATATCTTTTTCTTTTTTAGAATTGCTTTATTTTTTAAACAATAAGCTGCTCCAACTAGCTTTTTGAACCATC TTCGTGTGTTCTGTATTTTTTTTAATTGTCTCATTTTTTATTTATAATATGCTTGCTCCAACAAGCTACATTGTGATTGT TGCCCCTTTATGACCTTGTCTCTTGATTCTGGTTTCAACACTAGATTTTTAGAAAATTACCAGTGTAGCAATTAGAACCC TTCTCAAAATGAAAACCACAATGAACAATCATTTAGTAAGATTGTTTCATCAACGGTGAGTATGTATAAGTATAACAGTA GTTGGAGGGTGTGTGACAGAATCCGATGTTGTGGAGATTACAGAATGACTCAAGAGGCAAAGTAAGAGGATGTTTAAGTT ACGAGAAAATAGGCTGCATATCATGTGATTCACTAATTCTAAATTTTTGGAATCATTAGATTTAACCGACATGAAAGTTG AACATAAGTGTACCAGTGTAAGAATTAGAGTTGTATAATTTGATCCTCCCTCATATACCATTACTAAATTTCATATAATA CAAACAAAATGGTGAAAATAGGGAATGATCAACCTTATACCCTTGGTTTTATGGTCGAATCAACCTTATACAGTTATACT CTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0552500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCATTTCAAAGCTCACAACGCCAACACCAAACCCAGCCTTATCACAATCGCTTCGAACCCGATCTTCTCAGAA CTGCTTCCTCGCTTTCCAGCTACCTTCCTCAACCAATTTCAAAACCAACCTCTCCGCTTCCTTCTTTGCCCCTCGCTCCC ACCCTCTTCAAAACACTTTGCGGATTAGATGCTCCCAAACAGGTGGAAATGGAAGTCCTGCAAAGAGGACAACACTTCAT GATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCGTTACGGATCTGATTCCTCTTATTGA GAGTGGTGTTAGAGGAGTCACTAGCAACCCTGCGATCTTTCAGAAAGCTATCTCTACTTCAAATGCTTACAATGATCAGT TCAGGGAACTTGTGCAAGCAGGGAAAGACATTGAGAGTGCATATTGGGAACTTGTAGTGAAAGACATTCAAGATGCTTGC AAACTATTTGAATCAATCTATGATGAAACAGATGGTTCTGATGGCTATGTTTCTGTTGAAGTTTCTCCTAGGCTCGCTGA TGATACCGAAGGAACCATAGAAGCTGCAAAATGGCTCCATAAAGTGGTTGCTCGCCCCAATGCGTATATTAAGATACCAG CTACTGCTGCATGTGTCCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACTCTGATATTCTCTCTT GAAAGATATGAAGCTGTAATTGATGCTTACATTGAAGGTCTTGAGGCATCTGGGCTAAATGACCTCTCCAGAGTCACCAG TGTTGCCTCTTTCTTTGTCAGTCGTGTAGACACTCTCATTGACAAGATCCTTGAGAAAATTGGCACACCAGAGGCCCTTA ATCTACGTGGCAAGGCAGCAGTAGCCCAAGCAGCTCTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGG GAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTGCTCTGGGCCTCCACCAGTGTCAAGAATCCTGCCTATCCTGA CACCTTATATGTTGCTCCTCTTATTGGACCTGACACGGTTTCAACCATGCCGGACCAAGCGCTTCAAGCGTTTATCGATC ATGGTACTGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAACGCTCTCCAGAAAGTGGGTGTT GACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGAATCATTTAAGAAGAGCTTTGATAGCCTCCTGGATTC CCTGCAAGAGAAAGCTAACTCTCTTAAGTTGGTCAGTCTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0552500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASISKLTTPTPNPALSQSLRTRSSQNCFLAFQLPSSTNFKTNLSASFFAPRSHPLQNTLRIRCSQTGGNGSPAKRTTLH DLYEKEGQSPWYDNLCRPVTDLIPLIESGVRGVTSNPAIFQKAISTSNAYNDQFRELVQAGKDIESAYWELVVKDIQDAC KLFESIYDETDGSDGYVSVEVSPRLADDTEGTIEAAKWLHKVVARPNAYIKIPATAACVPSIKEVIANGISVNVTLIFSL ERYEAVIDAYIEGLEASGLNDLSRVTSVASFFVSRVDTLIDKILEKIGTPEALNLRGKAAVAQAALAYQLYQRKFSGPRW EALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGTVSRTIDSNASEAEGIYNALQKVGV DWSFVGSQLELEGVESFKKSFDSLLDSLQEKANSLKLVSL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF036915
68 440 373 3.2E-195
IPR004732
PANTHER
PTHR10683:SF19
77 439 363 6.0E-194 –
PANTHER
PTHR10683
77 439 363 6.0E-194
IPR001585
Gene3D
G3DSA:3.20.20.70
77 433 357 2.0E-143
IPR013785
Hamap
MF_00493
77 438 362 136.519
IPR004732
SUPERFAMILY
SSF51569
79 431 353 3.54E-73 –
CDD
cd00955
89 423 335 3.09159E-180
IPR004732
TIGRFAM
TIGR00876
89 426 338 1.4E-97
IPR004732
Pfam
PF00923
104 427 324 2.9E-78
IPR001585
ProSitePatterns
PS01054
112 120 9 -
IPR018225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004801
Molecular function Sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0006098
Biological process Pentose-phosphate shunt The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0552500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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