Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0552500 |
| Transcript ID | LotjaGi1g1v0552500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transaldolase; TAIR: AT5G13420.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|A9WT40|TAL_RENSM Transaldolase; TrEMBL-Plants: tr|I1KZJ0|I1KZJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0552500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108413158..108415560) extracted from Lotus japonicus Gifu genome v1.2.
TTCTCATTTCAAAATTTTGCTTCTAGATTATTGTTTTCTGCTATGCTATTGCTAAGCTTCGCGTAGTTGTGTTACTATGA ATTCGGATTTATGGTAGCCTTATTCGTGCTAGCATATTGTATAGGTAGTATAAATTTCAGTGTATGGATATGTTGACTGC ATGGTGAACCCGTTAATGATTTATTGAAACTAAGCTCTTGTTATTGACTGATGAGTATGAGGTTTTGTTTTTGTTTTTTA CATGGCATTAATAGGGAGGTAACGGTTTTTATGGTTGTTGTGTCTGTGCAGGATTAGATGCTCCCAAACAGGTGGAAATG GAAGTCCTGCAAAGAGGACAACACTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGA CCCGTTACGGATCTGATTCCTCTTATTGAGAGTGGTGTTAGAGGAGTCACTAGCAACCCTGCGGTAATAATATTTTCTTT TTAGTTAGCATTATCCATGTGTGAAGATGATTATCCTGGGAACAATGATGCAGAAATTAATACAGATTACATACGTTCCA AACATTGTTTTGAGTTGTAACTTTTACTTTTATATAATATTGGAAGTTGTTACTCTAACAAGCTGTCTGTATGTGATTGC AGATCTTTCAGAAAGCTATCTCTACTTCAAATGCTTACAATGATCAGTTCAGGTACTATCAATATCTTTTACTAACCCTG AAATTTCTTCTTTTGCAAACTTGAAAAGCAGTATAGTGGACAGTGGACTGAACTGTCTATTCATCCTGACACGGGTCATG GTTGTCTATCTGTAGTGTGTATATTCAGTGTATTACTGTTTAGCAATGCTTGTCTCTTAATGAAGTATGTTTATAGCTGA AGATATTTCCTCTCCAGCTTTTGTAGCTAATGACATACTACTTAATCCTCCAGGGAACTTGTGCAAGCAGGGAAAGACAT TGAGAGTGCATATTGGGAACTTGTAGTGAAAGACATTCAAGATGCTTGCAAACTATTTGAATCAATCTATGATGAAACAG ATGGTTCTGATGGCTATGTTTCTGTTGAAGTTTCTCCTAGGCTCGCTGATGATACCGAAGGAACCATAGAAGCTGCAAAA TGGCTCCATAAAGTGGTTGCTCGCCCCAATGCGTATATTAAGATACCAGCTACTGCTGCATGTGTCCCTTCAATTAAGGA AGTTATTGCTAATGGGATAAGTGTGAATGTGACTGTAAGTTTGTGCTACATCCTTTCATATGTTCTCCAAATTAAAAAAA TCAATATCATTTTGTGTTATTGTATGATATTCTAGGTTATGTTTTTAGCTACTTGATAAGTAATCCTAGATGTTGCCAGT CAACACAGCATTAATGGGTTAGTAAGCTTATGCTGATTATAAGTGAGGAAGGTTGTATTAGGAAGTTGAGAAGCTCATAT TCTCTTTTACTATGTCATCTGACTTGATCTCTATTACTATTTACTGGTGTCTGAATATATGTTTCTGGTACTTGTATCCC CAGCTGATATTCTCTCTTGAAAGATATGAAGCTGTAATTGATGCTTACATTGAAGGTCTTGAGGCATCTGGGCTAAATGA CCTCTCCAGAGTCACCAGTGTTGCCTCTTTCTTTGTCAGTCGTGTAGACACTCTCATTGACAAGATCCTTGAGAAAATTG GCACACCAGAGGCCCTTAATCTACGTGGCAAGGTAACTGCTCATAGTTTGCCAATTCTGATTTATTACACCTCTAGATAT CAAATATGCTCTGGTCATGACGCATTATATTTTATAGGCAGCAGTAGCCCAAGCAGCTCTGGCTTACCAGCTCTACCAAA GGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTGCTCTGGGCCTCCACCAGT GTCAAGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCTGACACGGTAAGCTGTCGTATTTTTCA CATGTTCCATCTGTTGCAGTTATCAATGGAGTTGATCTTAAGGAACTAGTATTTGGCCTTGCCTGTTTTTTAAACACTTG GAAATAAAATGTTTCCTAATCTTTGAGCTTGAGGATATGTTTGTTGTGTCTCATAGCATTACCTTCTTACTTCACAGGTT TCAACCATGCCGGACCAAGCGCTTCAAGCGTTTATCGATCATGGTACTGTATCCAGGACAATAGACTCAAATGCATCTGA AGCTGAAGGAATATACAACGCTCTCCAGAAAGTGGGTGTTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAG TGGAATCATTTAAGAAGAGCTTTGATAGCCTCCTGGATTCCCTGCAAGAGAAAGCTAACTCTCTTAAGTTGGTCAGTCTC TGA
CDS sequence (LotjaGi1g1v0552500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCGGATTTATGGATTAGATGCTCCCAAACAGGTGGAAATGGAAGTCCTGCAAAGAGGACAACACTTCATGATCT TTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCGTTACGGATCTGATTCCTCTTATTGAGAGTG GTGTTAGAGGAGTCACTAGCAACCCTGCGATCTTTCAGAAAGCTATCTCTACTTCAAATGCTTACAATGATCAGTTCAGG GAACTTGTGCAAGCAGGGAAAGACATTGAGAGTGCATATTGGGAACTTGTAGTGAAAGACATTCAAGATGCTTGCAAACT ATTTGAATCAATCTATGATGAAACAGATGGTTCTGATGGCTATGTTTCTGTTGAAGTTTCTCCTAGGCTCGCTGATGATA CCGAAGGAACCATAGAAGCTGCAAAATGGCTCCATAAAGTGGTTGCTCGCCCCAATGCGTATATTAAGATACCAGCTACT GCTGCATGTGTCCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACTCTGATATTCTCTCTTGAAAG ATATGAAGCTGTAATTGATGCTTACATTGAAGGTCTTGAGGCATCTGGGCTAAATGACCTCTCCAGAGTCACCAGTGTTG CCTCTTTCTTTGTCAGTCGTGTAGACACTCTCATTGACAAGATCCTTGAGAAAATTGGCACACCAGAGGCCCTTAATCTA CGTGGCAAGGCAGCAGTAGCCCAAGCAGCTCTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGC TCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTGCTCTGGGCCTCCACCAGTGTCAAGAATCCTGCCTATCCTGACACCT TATATGTTGCTCCTCTTATTGGACCTGACACGGTTTCAACCATGCCGGACCAAGCGCTTCAAGCGTTTATCGATCATGGT ACTGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAACGCTCTCCAGAAAGTGGGTGTTGACTG GAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGAATCATTTAAGAAGAGCTTTGATAGCCTCCTGGATTCCCTGC AAGAGAAAGCTAACTCTCTTAAGTTGGTCAGTCTCTGA
Protein sequence (LotjaGi1g1v0552500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSDLWIRCSQTGGNGSPAKRTTLHDLYEKEGQSPWYDNLCRPVTDLIPLIESGVRGVTSNPAIFQKAISTSNAYNDQFR ELVQAGKDIESAYWELVVKDIQDACKLFESIYDETDGSDGYVSVEVSPRLADDTEGTIEAAKWLHKVVARPNAYIKIPAT AACVPSIKEVIANGISVNVTLIFSLERYEAVIDAYIEGLEASGLNDLSRVTSVASFFVSRVDTLIDKILEKIGTPEALNL RGKAAVAQAALAYQLYQRKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHG TVSRTIDSNASEAEGIYNALQKVGVDWSFVGSQLELEGVESFKKSFDSLLDSLQEKANSLKLVSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 383 | 383 | 137.759 | ||
| PIRSF | 13 | 385 | 373 | 1.9E-195 | ||
| PANTHER | 22 | 384 | 363 | 3.8E-194 | – | |
| Gene3D | 22 | 378 | 357 | 1.3E-143 | ||
| PANTHER | 22 | 384 | 363 | 3.8E-194 | ||
| SUPERFAMILY | 24 | 376 | 353 | 2.2E-73 | – | |
| TIGRFAM | 34 | 371 | 338 | 8.6E-98 | ||
| CDD | 34 | 368 | 335 | 2.45276E-179 | ||
| Pfam | 49 | 372 | 324 | 1.8E-78 | ||
| ProSitePatterns | 57 | 65 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Pentose-phosphate shunt | The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. |
Expression pattern of LotjaGi1g1v0552500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…