Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0552600 |
| Transcript ID | LotjaGi1g1v0552600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Major facilitator superfamily protein; TAIR: AT5G13400.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9LYR6|PTR49_ARATH Protein NRT1/ PTR FAMILY 6.1; TrEMBL-Plants: tr|I1N5E5|I1N5E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0552600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108420197..108424139) extracted from Lotus japonicus Gifu genome v1.2.
TGAACATTACATTGTATAGTACTACTCCTTGACCTAAGAGCATCTCCAATACACGGTTCTTAGTTCTTATTTTTGAGTTA AGAACTAAGAACTGAGTTTTTAACCATTAGAGGGGCTGACATTGAGTTCTTAGAGCATCTTTATCCATCACATTCACTAG AGTGTCTACACTTCATTCTTTACAATTTTCCATAGTGCCACATAATCTAAACCACTTACTAATTTTTTTACTGCAACCCA AAAATTCTTAAAAGTTTCTCTTGTAGACCCGACAATCAACTAGATCATTATCGGTGATAAAATTCAATATCAAGTATTTA ACGCAACTACATTCACATAAACTCGAATCCGAAACCAAAGATTGAATGTATATCTCTAAATCTCTAACTATGGGAGCATC CTCTATTTGGTGGATGCTTCTATGAGCTTTTGCTTCACATGCCCAAATTACCTTAAAATGAGACTCTATCATCTATTCTA TAACAGGAGCTACTAAAAATCTTCTCTCCATTAAGGAGGAGAGCAGATCCAACAGTGCTGTGTTGAAAACAGAAGTTGGT GGTGGCTTTAGTCCTCCAGTTCCACTCTTAACTTTGCTGAAGAGATCCATGACCTTGTACATGTTTGATGTGTTGCAAAA CTGAAAGTTGAGTTTTTGTGCTAACTATAGCACTGTATTGTGTTAGAGTGAATGGATACCTCTGAGATCAAGTCACCTGA AGGCCCTCAACAGGGGACTCCAGGAAGCACCTCAATGAGCAGAAAGAAGCTTGGCATTTACTTCATTGAGTCTGAAGATA GAAGGATGGCATTTGGGCGTGGCTACACAGCAGGATCCACTCCGGTTGATATCCATGGCAAATCCATTGTAGATCTTTCA AAAACGGGTGGTTGGATTGCTGCATTCTTTATTTTTGGTACAGATTATATACACAAATCCATATTAACTATACATTTATG TGTGTGCATTGCATGCACGTCCATTACCATTTTATCTTATTTGATTGATCAATGTCAGAATGATTGAATTGGCTTCACTT TCCTCATAATCAATTCTGAAAGGCAAAAGCTACTCACGGTAGCTTCTCCCCAGAATTGATCTCGGTATAGAATCAATTAT ACAATGATTTCCAAACATGCATCATCTCTTTAACACATTTTATTGAACAAGAATACACATTTTTGTAAAATAGTATTCAT ATATGTTGTTTTTATCTCCTACAAATTTTTATACTCCTTCTTCCAATTAGACATGTTAATTTTACTTAATATGTGTTAAA TTTTATCCCATTTATCTCTTTGTGCAGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGCCTTTCAGTTAACATGGTG GCATTCATGTTCTATGTGATGCATAGACCTTTCACAAGTTCCTCCAATGCAGTTAACAACTTCTTAGGGATATCACAAGC TTCCTCAGTGCTTGGTGGTTTTCTAGCAGATGCATATCTTGGACGGTACTGGACAATAGCTATCTTCACCACAATCTATC TAGCGGTAATGGACAGTATCTGAAATCTGAAATCTGAAATCTGAAAAAACATTGCTTGTTTATATGAAGTTAATCAAGTT ATGATACAGTAATTATACTCACACATACAAACCATGCATACATCTAAAGCTAACAGACAACTCATTTTTCTCTATATCTC TTTCTCCTATAATATATTACATTCATTACTTCTCTCTTTTTTCTTTCTTTCTCACTCCCGTTGTCTGTTGGATGTCTGCA GAGTGCGGAGTGTTTGTTGAATGTCTACCCTATGCAGATTTCTACAAATCATTTTCTTTTATGATAAGAGAAGCATAAAT TTGTTTGATATATTTCAATTCTTTTGTTAACAGGGTCTAACAGGAATAACATTGTGTGCAACAATGAGCATTTTTGTACC AAACCAAGAAGAGTGTAGCCAACTTACTCTGCTTTTAGGACAATGTGAGCCTGCAAAACCATGGCAAATGACCTACCTCT ACACGGTTCTATACATCACTGCATTTGGAGCAGCAGGTATAAGGCCCTGTGTGTCTTCTTTTGGAGCTGACCAGTTTGAT GAAAGGAGTAAGAACTACAAGGACCATCTTGATAGATTCTTCAACTTGTTCTATCTTTCTGTGACCGTTGGGGCAATTGT GGCGTTCACTGCAGTTGTTTATGTTCAGATGAAATTTGGATGGGGATCTGCTTTTGGTTCATTGGCCATTGCAATGGGTG TTTCTAACATGGTATTCTTCATTGGCACTCCCTTGTACAGGCACAGGTTGCCAGGAGGCAGCCCTCTAACTCGTGTTGCT CAAGTTTTGGTGGCTGCATTTCGAAAGAGAAAGGCTGCGTTTGTTAGCAGTGACTTTGTAGGCTTGTATGAGGTTCCCGG AAGACGCTCTGCTATCAAGGGGAGTGGCAAAATTGCTCACACTGATGATTTCAGGTGAGAGCCATATTTGTATGCTAGGA CAGTCATCACAAGTACTTTGATTTCCAAATGATCCTGAAATTATCTTAAGTTTACTTCATATAGTTCATACTTCATAGCA TGTTTGGTTCCATGGTGAAAGTGAAGTTGATGAAATCATTCTATTAGCTTTTATGTGAACGTATTTTGTATTCTATGCAA ATCTTGAAACTACATATCTACTTAATCTATCAACATTTGTGAGAAATCTTAGATAGCATTTAGCATGCAAACATTATAGA ACAGAACAACTTGTTTCATTTTGCTTTTATTGATTCCATCTTTTTAAGTGGAGCCAAATATTGTAACGCTTACTTCTTTC TTTTTTAATCCTTTATATCAGGTTTCTTGACAAGGCAGCTCTGCAATTGAAAGAAGATGGTGCTAATCCAATTCCATGGA GGCTTTGCACTGTCACTCAAGTGGAAGAAGTGAAGATCCTCTTGAAACTCATTCCCATACCAGCTTGCACAATCATGCTC AATGTGATCTTAACTGAGTTTCTAACCCTCTCAGTTCAGCAAGCATACACATTAAACACCCACTTGGGTCATTTGAAACT TCCAGTAACATGCATGCCTGTATTCCCTGGACTCAGCATATTCCTCATATTATCCCTCTACTACCAAATTTTTGTCCCCC TCTTTAGAAGAATCACTGGTCACCCCCATGGTGCATCTCAACTTCAAAGGATAGGCATAGGCTTAGGAGTTTCTATCTTA TCAGTGGCTTGGGCTGCAATCTTTGAGCGGTTTAGAAGAAACTATGCAATAGAACATGGGTTTGAGTTTAACTTTTTATC AGCAATGCCTAATTTGAGTGCATACTGGTTATTGATCCAGTACTGCCTCATTGGTGTGGCTGAAGTGTTTTGCATTGTTG GTTTGCTGGAATTTCTATATGAGGAAGCCCCTGATGCAATGAAGAGTATTGGTTCTGCTTATGCTGCTCTTGCTGGTGGA TTAGGTTGTTTTGCAGCCACTATCATAAACAGCATCATTAAATCTTTAACAGGTAAAGAAGGGAAAGAGTCTTGGTTGGC CCAAAACATTAACACTGGAAGATTTGACTACTTTTACTGGATTCTCACAGCTTTGAGCTTGGTCAATTTCTGCATCTTCA TATACTCAACACATAGATACAAATACAGGACACAACAAGTTTATGAGATGGAGAAACATGATGTGGCAAACAATGTGAGC TCCACAAGAGTGGATAGCTAGCTGAATAGGAATAGATATGAACACAAAGTGTAGTCTCTGTTCCATTATATTGTTCCCTA TATATTACCTTGATTTTATGATTATTTTGTTTTTAGTTACTATGGTGATCAATATATCTATGTGTGTGTTTGATTCCTCT AAAATGAAAGATGTGCATTAAAGTATGGAGTTGTAGTTGTCATCAATGGTTGAAATTCAACAGCTTCCTATTTTATTATA GAAATTTGTACTTACTCTTTAAA
CDS sequence (LotjaGi1g1v0552600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACCTCTGAGATCAAGTCACCTGAAGGCCCTCAACAGGGGACTCCAGGAAGCACCTCAATGAGCAGAAAGAAGCT TGGCATTTACTTCATTGAGTCTGAAGATAGAAGGATGGCATTTGGGCGTGGCTACACAGCAGGATCCACTCCGGTTGATA TCCATGGCAAATCCATTGTAGATCTTTCAAAAACGGGTGGTTGGATTGCTGCATTCTTTATTTTTGGAAATGAAATGGCA GAAAGAATGGCTTATTTTGGCCTTTCAGTTAACATGGTGGCATTCATGTTCTATGTGATGCATAGACCTTTCACAAGTTC CTCCAATGCAGTTAACAACTTCTTAGGGATATCACAAGCTTCCTCAGTGCTTGGTGGTTTTCTAGCAGATGCATATCTTG GACGGTACTGGACAATAGCTATCTTCACCACAATCTATCTAGCGGGTCTAACAGGAATAACATTGTGTGCAACAATGAGC ATTTTTGTACCAAACCAAGAAGAGTGTAGCCAACTTACTCTGCTTTTAGGACAATGTGAGCCTGCAAAACCATGGCAAAT GACCTACCTCTACACGGTTCTATACATCACTGCATTTGGAGCAGCAGGTATAAGGCCCTGTGTGTCTTCTTTTGGAGCTG ACCAGTTTGATGAAAGGAGTAAGAACTACAAGGACCATCTTGATAGATTCTTCAACTTGTTCTATCTTTCTGTGACCGTT GGGGCAATTGTGGCGTTCACTGCAGTTGTTTATGTTCAGATGAAATTTGGATGGGGATCTGCTTTTGGTTCATTGGCCAT TGCAATGGGTGTTTCTAACATGGTATTCTTCATTGGCACTCCCTTGTACAGGCACAGGTTGCCAGGAGGCAGCCCTCTAA CTCGTGTTGCTCAAGTTTTGGTGGCTGCATTTCGAAAGAGAAAGGCTGCGTTTGTTAGCAGTGACTTTGTAGGCTTGTAT GAGGTTCCCGGAAGACGCTCTGCTATCAAGGGGAGTGGCAAAATTGCTCACACTGATGATTTCAGGTTTCTTGACAAGGC AGCTCTGCAATTGAAAGAAGATGGTGCTAATCCAATTCCATGGAGGCTTTGCACTGTCACTCAAGTGGAAGAAGTGAAGA TCCTCTTGAAACTCATTCCCATACCAGCTTGCACAATCATGCTCAATGTGATCTTAACTGAGTTTCTAACCCTCTCAGTT CAGCAAGCATACACATTAAACACCCACTTGGGTCATTTGAAACTTCCAGTAACATGCATGCCTGTATTCCCTGGACTCAG CATATTCCTCATATTATCCCTCTACTACCAAATTTTTGTCCCCCTCTTTAGAAGAATCACTGGTCACCCCCATGGTGCAT CTCAACTTCAAAGGATAGGCATAGGCTTAGGAGTTTCTATCTTATCAGTGGCTTGGGCTGCAATCTTTGAGCGGTTTAGA AGAAACTATGCAATAGAACATGGGTTTGAGTTTAACTTTTTATCAGCAATGCCTAATTTGAGTGCATACTGGTTATTGAT CCAGTACTGCCTCATTGGTGTGGCTGAAGTGTTTTGCATTGTTGGTTTGCTGGAATTTCTATATGAGGAAGCCCCTGATG CAATGAAGAGTATTGGTTCTGCTTATGCTGCTCTTGCTGGTGGATTAGGTTGTTTTGCAGCCACTATCATAAACAGCATC ATTAAATCTTTAACAGGTAAAGAAGGGAAAGAGTCTTGGTTGGCCCAAAACATTAACACTGGAAGATTTGACTACTTTTA CTGGATTCTCACAGCTTTGAGCTTGGTCAATTTCTGCATCTTCATATACTCAACACATAGATACAAATACAGGACACAAC AAGTTTATGAGATGGAGAAACATGATGTGGCAAACAATGTGAGCTCCACAAGAGTGGATAGCTAG
Protein sequence (LotjaGi1g1v0552600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTSEIKSPEGPQQGTPGSTSMSRKKLGIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIVDLSKTGGWIAAFFIFGNEMA ERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMS IFVPNQEECSQLTLLLGQCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKDHLDRFFNLFYLSVTV GAIVAFTAVVYVQMKFGWGSAFGSLAIAMGVSNMVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRKAAFVSSDFVGLY EVPGRRSAIKGSGKIAHTDDFRFLDKAALQLKEDGANPIPWRLCTVTQVEEVKILLKLIPIPACTIMLNVILTEFLTLSV QQAYTLNTHLGHLKLPVTCMPVFPGLSIFLILSLYYQIFVPLFRRITGHPHGASQLQRIGIGLGVSILSVAWAAIFERFR RNYAIEHGFEFNFLSAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATIINSI IKSLTGKEGKESWLAQNINTGRFDYFYWILTALSLVNFCIFIYSTHRYKYRTQQVYEMEKHDVANNVSSTRVDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 82 | 82 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 21 | 620 | 600 | 0.0 | – | |
| PANTHER | 21 | 620 | 600 | 0.0 | ||
| Gene3D | 44 | 618 | 575 | 6.1E-166 | – | |
| SUPERFAMILY | 63 | 612 | 550 | 3.14E-23 | ||
| CDD | 71 | 607 | 537 | 0.0 | – | |
| Phobius | 83 | 101 | 19 | - | – | |
| TMHMM | 83 | 100 | 18 | - | – | |
| Phobius | 102 | 112 | 11 | - | – | |
| Phobius | 113 | 133 | 21 | - | – | |
| TMHMM | 115 | 134 | 20 | - | – | |
| ProSitePatterns | 125 | 149 | 25 | - | ||
| Phobius | 134 | 139 | 6 | - | – | |
| Pfam | 136 | 573 | 438 | 1.5E-83 | ||
| Phobius | 140 | 163 | 24 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 164 | 188 | 25 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 189 | 208 | 20 | - | – | |
| Phobius | 209 | 228 | 20 | - | – | |
| Phobius | 229 | 252 | 24 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 253 | 257 | 5 | - | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 258 | 278 | 21 | - | – | |
| Phobius | 279 | 377 | 99 | - | – | |
| TMHMM | 375 | 397 | 23 | - | – | |
| Phobius | 378 | 400 | 23 | - | – | |
| Phobius | 401 | 419 | 19 | - | – | |
| TMHMM | 417 | 439 | 23 | - | – | |
| Phobius | 420 | 438 | 19 | - | – | |
| Phobius | 439 | 458 | 20 | - | – | |
| TMHMM | 459 | 476 | 18 | - | – | |
| Phobius | 459 | 476 | 18 | - | – | |
| Phobius | 477 | 501 | 25 | - | – | |
| Phobius | 502 | 528 | 27 | - | – | |
| TMHMM | 505 | 527 | 23 | - | – | |
| Phobius | 529 | 539 | 11 | - | – | |
| TMHMM | 539 | 561 | 23 | - | – | |
| Phobius | 540 | 565 | 26 | - | – | |
| Phobius | 566 | 584 | 19 | - | – | |
| Phobius | 585 | 603 | 19 | - | – | |
| TMHMM | 585 | 604 | 20 | - | – | |
| Phobius | 604 | 634 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0552600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…