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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0552900 |
| Transcript ID | LotjaGi1g1v0552900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein GOT1; TAIR: AT1G05785.6 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|Q6NMM1|GOT1_ARATH Vesicle transport protein GOT1; TrEMBL-Plants: tr|I3T6C6|I3T6C6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0552900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108477877..108481749) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATTAAGAGGCCCATGATAATGTACCAAGCCCGAGATCCATTGTCTCTCTCTCACTCTCTCTTTCATCGAATCACCC ACCCACGCCACGCTTCTTGATTTCTTCTTCTGCATCAAATTCAACTGAGCTTAGAGGTGAATTTTCAATTTAATTCTCTT CATTTGTGTCAGTTTTCAAAGAAACAAATCTCTGAATAAATCTAACAACTTTAACTGATTGTTCTCCACTTCAAGTTATT ACTACTTACTTGCATTTTGGTCTTTGAGCTGGTGTTGTTAGGGTTAGGGTGACATGTATATTATTAATTGATGAACTGAT TTTTCTCCATTTTCTTTCACAGTTCCTTCAATACTAATCAATATGGCCTTTGATATAGATGAGATCAAGAGTAAGCATTG CATTCTCTCTCTTTATCATTTACTTTAAGAACCTCATTGCATTGTTCTATTTGTTATAACTGCTTCAACATCACCATTGC AGAGATTGGTATAGGCCTCATTGGTTTCGGCATCTTTTTCACATTTCTTGGCATACTTCTTTTCTTCGACCGCGGTTTGC TTGCTCTGGGAAATGTGAGCCTTGCTTTAAGAATCTCAATTTTCTTAACTTTATCTATTCTGGGAAAGTGCAAGTATAGG CCTAATTAAGGTTTTGGTACCTGGCATTCTGGAATCAGATTTTTTGGTTGGCAGGGGTAGCAATTTTGCTTGGTTGGCGT TCCATGTGGGGAATCTTCACGAATAGAGCAAACTATAAGGTATAGTGAGTGAGAATTTTTCAGCCTATTAATGAAATATA TTGTCTCCCTCTTGCTTTATCGCGGTAGAGATTAGTGAATACTTTTAGAATGTCAGTCAGACATTACATAATTATATTTT GTAGGCTATTCACTAAGGGTATCGCTGGTTAGCTTTTGCATCAACTTTGATTAATTCATTACAAATTTGTTTACATTGTA TCAAGAAACAATTATTGCATTCCTTGAATTGAAATTTTCTCAATGAATCTGCTAAACTATATATATCACTTTGCATGTCA CAAATGTGTACAAGTTTAAAAAAATGGTAGTTCTGTAAGCAATTATAATGAGTAGATACATGTCTAAGGACAAGAAGCAT CTTCAGTTTTCTTTGTTCTTATTTGTCTTTGATCAATTCACACATTTGTTTGATTACTGGTATCCAAGTAAAATCACTGT TAAAATAATCAAATTGCATAATTTATCCTAACCACTGTTATGTTGGAAAAAAAATACAAGTGTCTTGCATAAAGGGAAAT GTTTGTCATCAAATTCAAAATCTAGTTCTGATCTTTTCAGCACTCCAAAGAAGGTGCATGTGCTAGGGGAAAAAATATCT GATAAATTTTGCTTTAAGTGATCTCAGCTGCACACTTAGTTTCTGTGTTCCTTCATTTCTTTCTGTGATTGAGCCTTAAA CCCGACAAATGTTCTATGTAAATGGATCGGGGAGCTAGTTTAGGGTGCCCATCTGTTCCATCTTTTGCTTTTTGTTCTAC TATTGCATCATATCTTGTCCTTCATTCACCTTGATATTTTCTAAGTTCATTATGAATGGATAGTGAAGCATTCTATATGG AAATAAACATCACTGCTTTGCCTCTTTTGCAGGGTTCTGCATCATTTCTTCTAGGACTCTTTTTCATTTTTGTGAGGTGG CCAATAGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGGTTTGTTGATGGATTTCTTCTTGAACTTGC ATTGGTACAAATCTTATCATTCTATACTTATCATTGATGCCTTTGATTGCAGTGATTTTTGGTCATCTATCAAAGTGTTC CTCTACCATATTCCTGTTGTTGGATGGATTATACGGTTTATTGCTCGTAAGTTTTATGTGAAGATTCATTTTCAAGATTT TCTGAAAGCATGCACACACACACACACGCGTAGTATATTAAAGTAAATATAGATATTATTCAAACTACTTGTTCATATGA AGAATGAAATGAAATTGGTCCTGTAAATTTACATATTTCCATTCACACTCTATTTAATATTTAATTAGATGGGGATAGAC GTTTAGTGTATAAATATTCCCTGGTTGTATCAATAATGGAGAGTGATCTCTGGTGTAAATATAATAGATTTTCAGCCTTG ATTACCAGTTTTCTATTAGCTACCCACTGGGATGACTCAAGTCATGGACAAGCTTGAGCTCAATAGTTGAGGGGAGTCTA CAATGTCAGGGGTTATAGCCTACAAGAAACAGGAGAAAGAACTTATGAGGAGGGGCTGCTTCAGTGTTTGAAACAAAGAT TACTCACAGCCTTGTAAAAACTAATAATATTAGTAATAATAATTAAAAACCAAAACAAAAACCCTTGGCCTCATATTCTC TTATTGTGACAAGATGGCAATTGATGCATTCTACAATGCAGTTGATCAAATTTAAATAATTGAATGTCTTGTTCTGCGAT TTCCTAACTGGAAACTGTTCTCTTCACACCAATTCCACCTCCACCCTTTAGGGAGAAATAGGAATAGAAGAGAGAGAAAT GTAAGATATGATGGGTGATGTTTTGGGGAAAGATGAGAGAGATATGAAGAGAAAATGGGTGTAAATAGGATGGAAGAGAA AAAGAGGTGTGAACTGTGAATATATCAAAGCTGTTCCTAACTCCTCAGGCGTGTGTAGGTTCAAATTGTTATCTTAGAAA ATAAGTGATAGGGCAGCACCCAAAAATAATTATGTTGTTTAATTTCTAAATTAAGGTGTGTTTGGGTAAACAACTTAACT GAACACTTATAGGAGTTATAGCAACAAGCTCTTTATTGCATAATCGTTTATGTATAATCTAATTTGAGAAGCTTATTCAT AAGCTAATTAAGCTCAAAGTAGCATATAGGTAGGTCACACCTGCATAGGCGTTTATCCTATTAGATAAATTCAAATAAAC TCTTCCAGACGGGTCGTAGTCTAATTACTAGACAAAACCATCTCAGGGGAAAACAATGAATTTTGTTACCCACTAAACCA AGTAACAATTTGTCAACAAAGAGAAAAGGACCCACCCATGTCCTTTTATTTCACCAACTCTATTGCAGGCAAAACAACAA ACACATAACACAAAAGATATTTTAGTATATTTCGTCGTGTATCAATTGGTGGATAGCACAAAATTATAGTCCTGCAGTAT AGGTCACCAAACATCTAACAACATAGAAAATCTTCATGTGATTCATTCACTTGTGCTATATGTTGTTTGTTTGTGCGTGT CTGTGAATGGGCAAAATTGGTTTTACTTGAAACTAATTTTGATTATTCATATAAAATAAAATGGTGATAATTTTCAGGCT TTCCCATTCTTTACCTTATAACGTATATGATGTTAGAGCTTAACACATTCCTTTCTACTATTTTTCCAGCTTCTTGATCA CCGCCAGAAGGGGATATGACTGTTACATTTTCGTATATGGGCTGATTAAGGGTTTCAATTGCCTTAGTGTTTGTAATATT TCCAATGAGTCATGCTTCATTATGATGCTAAGCGCTTTTCTAATTGTTTGCCATCAGGCAAATAGGCATCTTTTAGTGTT GTAAAGTATTGTGAAATTGTAATTTATGTGTGAAGGTGATTTTACTCTTTCAGTTGTCTATCAGTATCAAAGGGTTATTC CTGATGAATGGAAAACAGACCACTTTCATGGAAGCAGGTGGATGTACACTATAATTGGTTATCCAATATTCTTTTCTTTT TTGTGAAACTTATTCTATATTCTTCAAACTTTGAGTAGGCTAAAGTGCCTATGTTTTATTCTCACTTCGTGGCATTTTGT CAAAAATAGTTAATAATTCAAACATTTTATGCC
CDS sequence (LotjaGi1g1v0552900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTTGATATAGATGAGATCAAGAAGATTGGTATAGGCCTCATTGGTTTCGGCATCTTTTTCACATTTCTTGGCAT ACTTCTTTTCTTCGACCGCGGTTTGCTTGCTCTGGGAAATATTTTTTGGTTGGCAGGGGTAGCAATTTTGCTTGGTTGGC GTTCCATGTGGGGAATCTTCACGAATAGAGCAAACTATAAGGGTTCTGCATCATTTCTTCTAGGACTCTTTTTCATTTTT GTGAGGTGGCCAATAGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGATTTTTGGTCATCTATCAA AGTGTTCCTCTACCATATTCCTGTTGTTGGATGGATTATACGGTTTATTGCTCCTTCTTGA
Protein sequence (LotjaGi1g1v0552900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFDIDEIKKIGIGLIGFGIFFTFLGILLFFDRGLLALGNIFWLAGVAILLGWRSMWGIFTNRANYKGSASFLLGLFFIF VRWPIVGIILEIYGCVFLFSDFWSSIKVFLYHIPVVGWIIRFIAPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 124 | 124 | 1.6E-65 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 124 | 124 | 1.6E-65 | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Pfam | 20 | 112 | 93 | 5.1E-9 | ||
| Phobius | 32 | 36 | 5 | - | – | |
| TMHMM | 35 | 57 | 23 | - | – | |
| Phobius | 37 | 60 | 24 | - | – | |
| Phobius | 61 | 71 | 11 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| Phobius | 72 | 99 | 28 | - | – | |
| Phobius | 100 | 104 | 5 | - | – | |
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 105 | 124 | 20 | - | – | |
| Phobius | 125 | 126 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0552900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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