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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0553400 |
| Transcript ID | LotjaGi1g1v0553400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Solute carrier family 35 protein; TAIR: AT3G59310.1 solute carrier family 35 protein (DUF914); Swiss-Prot: sp|Q5T1Q4|S35F1_HUMAN Solute carrier family 35 member F1; TrEMBL-Plants: tr|I3T028|I3T028_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0553400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108522395..108529580) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAACTGAAATTTGCTATGCATAATCATCATGATAATATCACATGATATTGAATGATTAAACTTGTTAAATCCATATC TCTAATAAAGGAAGTAACTCTTGCTTAATCATCACTCATTAAGTAACTGAATCCCTCTTCTATTATATTATTATCATTAG GCTTAATAAATCAACCTTTGAAAAAAATCGAATTTTGATAAAGAAAACAAACATCCGAGGAAAGCGAATTTTGATGAAGG AAACAAACATTGAAACGCATCATAGGAAAGCTGAAAAGGGATCGATTGTGTTTGTGGAGTAATGAAATGTTTGTGTCAGT GTCGCCAATAATTGACGGCTGAAAAACCTCAACGCACTTAACTTTTTATGCGCTTTGGTCTCACCGCTCTTTTTCTTTCA CTTTCTCACCCAATACCAAATGTCCAATTCCAATTACCAATACCAATACCAATACCAAACCTTTCTTCAAATTCAATCAA TCTCTCTATAATATTGCATTGCACTACAACCAGCTTTGAATTTGATACATGGCGATGGATTTTCGCAAGTTTTGGACGAG AAACATGTTAATTGGTCTTGGTTTGGGACAGTTTCTTTCTCTTCTCATCACTTCCACTGGCTTCACTTCTTCTGAATTGG CTAAGAAAGGTATAGGTTTATGAATTTCCCATGTGGCTTTTCATTATAGGCTGGAATGGATGGCCTCCTACTCACTTTTC TGTTTGTCCCTTTTGCAGGAATTAATGCTCCAACTTCTCAGTCTTTTCTAAACTATGTCTTTTTGGTTATTGTTTATGGA AGTATCTTACTGTACCGAAGGAAACCACTCAAGGTTAGTTATACTACATGCTTCATCATCACCTTGTGCTTAATGTTGCT ACAAATTGAATTTTTCTATTTGCAAAATATGATGCTTTGCCTTAGTATATGATGAAATACTATTTTTTTTAATCAATTCT ATTGTACTCCTTCATGGCTGGAGTTTTAAAGCAATAAGTTCCCCTTGATTTTCTGATTACATGATTAACCCAACAGTTTT TGTATGATCTGTGTAATTTTGTTATACATTCATATTATTCTCCTTATTGGTTTTTGTGTATAAGAGATGATCCTCTTTCA TATCTGCTTTAAGGATAGTTAGTGTGTTGGAGGGTTGTCTTTGAAAAAGATCAACTGTTGTTACTGTAGCTCTGTTTTTT CCTCTCAATGTCAAACATTTGAAGACAATTTCATTAACTTCATATGGTTCTCACACAGGCAAAATGGTACTACTATATAA TTCTTGGATTGGTCGATGTGGAAGCAAATTTTCTTGGTAAGTGTTTCAAGGTAATAGAGACTGTTAGAGTATATAGCTTA GCCAGTGGCTGTTTATTTAATTAATCACCAGTTACTTTTTGCAATCTGTTAGAAGCCTCTAACCGAATAAGTAGCGGCTG GTCAGCTGTCATGTTAGTTAGATTAGTTAGCATAGAGGAGAAGTTTCTACAGGGTTATATGAATCCTGAATCTGTACATT CACATTGAGTAATGAGAATACAATTTTCACATTTCTTAATTCTCTTCCTCTTCTCTATTTCTAGTAGAGCAATAATAAAA CAAATACATTTCTATGCAGTTTTCTCAAATAACATTTATATGCTGTCTGCAAAAATTAAATGACCAACCTATAGGTCCCA AACTTAAATATCCATATCTAAGTTACTCACTCTAGTGTGAGTTTCATTTTTTGTGTATATTTTAGTGGGCTCTTCGCCTC TTCCTATGTATTAAAACGAAGCTAGTCAAATGTTGACTTGGAAGATCTTACTTTCAACTATTGACTAACTAAATCTCATT TAATGAACAGTTGTGAAAGCGTATCAATACACCTCACTAACAAGTGTGATGCTGCTTGACTGCTGGTCCATTCCATGTGT CATGCTTCTTACATGGATTTTCTTGAAAACAAAATATAGATTCTTGAAGATTACTGGCGTAATTGTTTGCATCGCCGGCC TTGTCCTGGTTGTGTTTTCAGATGTTCACGCAGGAGACCGGGCAGGTAGGTAGTTTTTAATGAGCTGGATTATTGGCATC TGTATCTTATATTTATACTTAAGCAGACATATATAAAGAGTGTGCATGCGCATTCTCCACATCTTTATCCTTAAAAATCA CGGAGCTAGTAAATTTTGATCCTATCTTTCATTATCATCACTAACATGCACATTCCATTTATGGTAATTGTCTGATGGTG TCTTATTCATGTGGCATAGGTGGAAGCAATCCTCGTAAAGGGGACGCTATTGTTTTTGCTGGTGCTACCTTGTATGCAAT CAGTAATGTCAGCGAGGTAAGTTGCTTGCTCTTGTGCATTAATGCATTTTACAACACTCTGGCACAACACAGTCAATAAT ATACTCAGTAATTACTATAAAAGATATTGGTTAATACTTAATATACAAAGGCTGCACACTTCTCCTTCTCAATGTGCATT CTTATCAGGTGAGTGTTTCAGAGTTTGCCGTCTACTGAATCTAAAATTTCATGATGATTTCATTCCTAAGTAATACGGAT CTGTACTTTGTTTCCTTTTTAGACCCTTCCATCCCTTCTTCCATCCAATTCATTTGCTTTTATACTTCCAAAACTAGTGA AACTCCTAGTATAAACCTTTTTAGTGTGATTCAAAGTACAGATTTTTTTCTGCCTATTTTTCTATATCTATATGTTCCAT TCCCAATTTAGTCAGTGTTTTAAAACTTTCAATCATGTATCTTTCACTTAATAGAAGTGTTACTGGAGCTAGGACTTAAT TTGACCATGCTCGTTGTTATGTTCATGATTTGTCTATAATGGAAAGTTTGATTAATTTGAAACACTTACATGCAGATACA TCCACAACTACTTCTGGGTTAATTATAGGCATGTGTTTATTGTCTGTATTTTGAGAAGCCTCAGTCCCTGTCCCACATTG TCTAAGAGATATGGCCAAAATAACGGTTATAAGTGGTAGAACAACCCTCACCCCTAAGCTAGCTTTTGGGTAGAGTTAGG CCCAACCCAAATTCTAAAATGGTATCAGAGCCTATCTTAGATCCGTTTATTGGAGACTACACCCATATATGGGCCACCGG CAGATGTTCATTCCTGCAAATTCCACGCTCCATATGTCCAGCTCTGGGCGTGAGAGGGTGTGTTGAGAAGTCCCACATTG ACTAGAGATATGGCCAAAATAATCCTTATAAATGGTAGAGAAAGTCTCACCCGTAAACTAGCTTTTGGGGTAGATTTAGA CCCAATCCAAATTCTAAGACCATACTATCACAAACTGAACTAGGTTTTTGGCCTCCTAATAGAAAAACATCTATATATTG AATTTGGGCTAATTCTTGATATATGCACACTTGACTGCTCATATTAGTCTTTCATGTTGTGCAACCTCTCGTGTTATTGT TATTTCTTCTCCATTTCAGGAATTTTTGATAAAGAATGCTGATAGAGTTGAGCTCATGGGAATGTTAGGTCTCTTCGGTG GCATTGTTAGTGCCATTCAAATGTATCCTGGAAAGTTGAATATATTATGAGGACTATGGGATCTTTTTTTTTTGAATTTT TTTTCTTAACTTCCTGCATGCTTAATTATTTCTCACAAAAGTGTTGTACATCTTCAAACTACCTCCTCCATGAAAATTGC ACAGAGAATCTATTTAGTGAACATTCGTTCCACCATATATTGTCCAATACATGATTATATCTGTTTGCCCTTACAATACA GTTTGATATGTTGCGTAGCTTAAGCATTTAATTTTAGTCTTTATGCAGGATAATATTGGTTTGTTTAATAACTTAACAAC TTCTCATAATCATTTTGTACTCCAAACTTGCTTTTGGAATTAATATGAAATATTGAATTGATTGAGTAGTTGTTACATGT GAATGACATGCAATTTTAGTTTAGTTCCAACTCCATATATTTTAAATTCAGAACTTATTTTTGCCAAATTAAAAGTGGCA ATGTTGGTATGTAATTTGAATTTGATTTAACAAAGAAAAATAAAATGAAAATACATGTCCATTCTATTACTAGAATTATT CATTCTTAGTTTTCTTTCACCTGTTGTATCCTTAATGATTTTACAGAAGCGTACTCGAGCGCAATGAACTTAAATCTATT CATTGGTCGGCTGGGGCGGTAAGCTCTCTATTACTCTCATCCTCATATGATTGAGTAACTGATAGAATTCCACTTTAACT AGAATGCATGCAATGCAAGGCTGTGAGTGTCCAATGTATACAAAACCTTTAGTTGACATTGTTGAAGTAGATTTAAAATG GAAATGACCTGTTTTCTCCTCCTATTTATCCCTCAAGAAAGAAGCTACAATGCTAATGAGCTAGGTAAGAATTGAAGGAA GTTTATACAACAATAACAACAACAACAATAAAAGCTTTATTCCACTAAGGGAGGTCAGCTATATGGATCACACTACGCTA TTGAACTCGATCAAAATCCGGATTATGAGGGATACTATTGATAATGAAATTTAACCAAGTTTATATTCAGGATAAAACCA CTTGGAGTTGATTCAGAATAGACTTCAAAGTTTATAGCTGAGCTTCGAGTTTAGTGGATTCTTTTTATTTGATTGTTTTT CTCTTACCTTCAATTTTTGATGCAAGACCTTTCTTATTATTGTCTTAATATTTATATCTAGTTGTATATGTCATCATTAT ATGGCAGTTAGTATGATGTCAGACCTGTAAGCACGATTATTCATGCTAATTTCTTTCAATGTTGGTTTCAGGCACTTCCT TTTGTTGGATTTTCAGTGGCTATGTTTATGTTTTACTCGTTAGTCCCTGTTCTGCTTAAGGTGTGGTTTCAGACCATGAC AATTCTACAGTTTTTTTTTTCACAAATTATTTTTGTTATGATGACTGAGGAATAAAACGATGGAAGTATACTAAAAAAAC AGAACTTATTGAAATAATTAATTATAAAAACTCTAGGATGCAGTTCTTTAGTGTTAATCTCTCTCTGAATGTTTCTCCAA TCTCCATAATTTTTCACACTGATTTTTAATTCTAGAGCACAATAGTTTAATAATCATGTAGCACTGAAAACTTTCATGAC ACTGATCTAGTTTCTTGCAATTTTCATGGTACAATTGTAACATATTTAGTCTAAATATCCAACTGGCAGTGGCATTTTTC TTGCACCATGGTGTAAGTGCTAGGTTGTGTTTTCCGTAGCAGAAGTAGACATGTGAAGAATATCCAGCTTTATACTGGAA ACAAGGGTTCTCTAATATGCTTGTTGTTTTGACACAGATCAATGGATCTACCATGCTAAATCTTTCTCTGTTGACCTCAG ATATGTGGGCTGTCGTAATTCGCATTTTTGCTTATCATGAGAAGGTCTGATAGTATCCTTAACTCCTCTTTGTTTTGTAT ACTCAGAAATTCCTGGTATATGAGTCGCATTTTCAGTCTGCTAACATCTTTAGAGCTAATTGTGCTTTGCAGGTTGATTG GATGTACTTTGTGGCCTTTGGAGCTGTTACCGTTGGGATTCTTATCTACTCTGGGTATGCATTCTTGCACTTTCTTCCCG TAATTTATGTTTCTGTTGTGAGGTTATTTCGGGATTTTTCCAATAATGAGTTATTTTAAAACTGGTTCAGCTAATTCTAG CATGTTACATAAGTTAGCCTCTACAATGGATAACAATGACCATTTACTACGCATTCAAACTAAGTGTATACATACTTTAA TACCATCTTTATGTTGTTTTAAGGGCCTATTTGATATTTTGATTACTGTTTTGCAAAACAGTTTTTGGTTTTCAAAGCAG AAAAAGAAAAGAGCTTATTCTTTAAAATAGTTCTTATTTTTCAGTTCAGCTGTTTCTGTTCCAGATTATTGGTTTGTAGT ATCTGTTTATGGTGTATTCCTTGCATGGCCAAGGCGTTTGTTTACTCTCGGGATTCTTTGCTTGTTGTGTTAATACTTAA AACTATGATAACCTCTTCCATATGTCTTCATCTAATAGTTCAAGCTTTTGAGATGGTTAATTTATGATATGTTATCAAAG CCTTTATTACCATAGTCAATATTTTGATCTTTGTAGCCTTCATTCTTTTAAATACAAGTTGAATTTCAGCACCAAGGTCT TGCAATTTCCAGGCTTCTCTTGCAGAGAGCTTTTGTCTGATGGGGTGTCAAAAATATAATAAAACCATTCATATGCTTTT CACAAATAAATTTAAACTTTTGAGATACTTGTTTCATGATAGTTTAACCTAGTAGTTACTAGTTATCAAAGAGAGCCATG CCTATTTGACTACTGTTTTGTAAAACAGTTACAGTTTTGTAAAACAGTTAACAGTTTTGGAAAACAGAAAAAGAAAAAAA CTAATTTGGTATGAATAATTTTCAAAAACAGTTCTTATTTTCAGTTTTTAAGACTGAAATCTCAAAACATCTCGGATATA GTTTTCAAGTCACATGTTTTTAAGCTTTGAAAAAACATATCGTTCAAACAATTATTTGCTTTGATTCTTTTGGAAAACAT GTTCTAAAAATTGTTTCTGGAAATAGATTTTAATTTCAGAAAACTGAGAATGAAATCAAACAAGCCCTCGATAACTTGGT TGTGGAAGAAAGTAGTGACTTGTGTTGTGTATGATACCCTTTAATATCTGTAATAGATTAAGTGTTTTTGCCTATGGTGT TTCATGTTATTGCAGAGGTGACAAAGATGAGGATGAGGATCAGCACCCTCTTAATTCTGCTGAAGATCCTCCCAGAATCA AACAGGATGAGGAAGCCAAATCAGGAAATTCTAGCAGAGGAACTGGTGCTGGAAGCTCAAAAACCTGGGTAGCTTAAGAA ATAATAGACCTGGGAAGAGCCTCCTTCAAAAGTTGATGAGACTATACTCCACAAAGCAAACATTTTGATTATTGTCCATA TTTTCTATCATTTGAAGGCCGAGCTTGTTCTTTAGAGTTTAGATGGAATTTTGATGAATCTTTTATGATTTAGAAATTAA TAGTCAAGTTTATTTTTGTCAGTATGTTGCTAAATATCTGATGTTTTTTCTATAGAAGGAAATTGATGAGGATAATCTAT CTATTCTATTTTAATATATCAATTCTGAAGCGCGGAATGTGGCGCCGACATTTAAGCATTTTACAA
CDS sequence (LotjaGi1g1v0553400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATGGATTTTCGCAAGTTTTGGACGAGAAACATGTTAATTGGTCTTGGTTTGGGACAGTTTCTTTCTCTTCTCAT CACTTCCACTGGCTTCACTTCTTCTGAATTGGCTAAGAAAGGAATTAATGCTCCAACTTCTCAGTCTTTTCTAAACTATG TCTTTTTGGTTATTGTTTATGGAAGTATCTTACTGTACCGAAGGAAACCACTCAAGGCAAAATGGTACTACTATATAATT CTTGGATTGGTCGATGTGGAAGCAAATTTTCTTGTTGTGAAAGCGTATCAATACACCTCACTAACAAGTGTGATGCTGCT TGACTGCTGGTCCATTCCATGTGTCATGCTTCTTACATGGATTTTCTTGAAAACAAAATATAGATTCTTGAAGATTACTG GCGTAATTGTTTGCATCGCCGGCCTTGTCCTGGTTGTGTTTTCAGATGTTCACGCAGGAGACCGGGCAGGTGGAAGCAAT CCTCGTAAAGGGGACGCTATTGTTTTTGCTGGTGCTACCTTGTATGCAATCAGTAATGTCAGCGAGGAATTTTTGATAAA GAATGCTGATAGAGTTGAGCTCATGGGAATGTTAGGTCTCTTCGGTGGCATTGTTAGTGCCATTCAAATAAGCGTACTCG AGCGCAATGAACTTAAATCTATTCATTGGTCGGCTGGGGCGGCACTTCCTTTTGTTGGATTTTCAGTGGCTATGTTTATG TTTTACTCGTTAGTCCCTGTTCTGCTTAAGATCAATGGATCTACCATGCTAAATCTTTCTCTGTTGACCTCAGATATGTG GGCTGTCGTAATTCGCATTTTTGCTTATCATGAGAAGGTTGATTGGATGTACTTTGTGGCCTTTGGAGCTGTTACCGTTG GGATTCTTATCTACTCTGGAGGTGACAAAGATGAGGATGAGGATCAGCACCCTCTTAATTCTGCTGAAGATCCTCCCAGA ATCAAACAGGATGAGGAAGCCAAATCAGGAAATTCTAGCAGAGGAACTGGTGCTGGAAGCTCAAAAACCTGGGTAGCTTA A
Protein sequence (LotjaGi1g1v0553400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMDFRKFWTRNMLIGLGLGQFLSLLITSTGFTSSELAKKGINAPTSQSFLNYVFLVIVYGSILLYRRKPLKAKWYYYII LGLVDVEANFLVVKAYQYTSLTSVMLLDCWSIPCVMLLTWIFLKTKYRFLKITGVIVCIAGLVLVVFSDVHAGDRAGGSN PRKGDAIVFAGATLYAISNVSEEFLIKNADRVELMGMLGLFGGIVSAIQISVLERNELKSIHWSAGAALPFVGFSVAMFM FYSLVPVLLKINGSTMLNLSLLTSDMWAVVIRIFAYHEKVDWMYFVAFGAVTVGILIYSGGDKDEDEDQHPLNSAEDPPR IKQDEEAKSGNSSRGTGAGSSKTWVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 7 | 341 | 335 | 8.2E-177 | – | |
| PANTHER | 7 | 341 | 335 | 8.2E-177 | – | |
| Pfam | 10 | 299 | 290 | 6.6E-135 | ||
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 14 | 26 | 13 | - | – | |
| Phobius | 27 | 34 | 8 | - | – | |
| Phobius | 35 | 49 | 15 | - | – | |
| TMHMM | 49 | 66 | 18 | - | – | |
| Phobius | 50 | 66 | 17 | - | – | |
| SUPERFAMILY | 60 | 150 | 91 | 4.84E-11 | – | |
| Phobius | 67 | 74 | 8 | - | – | |
| Phobius | 75 | 96 | 22 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 97 | 101 | 5 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 102 | 122 | 21 | - | – | |
| Phobius | 123 | 128 | 6 | - | – | |
| Phobius | 129 | 147 | 19 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 148 | 166 | 19 | - | – | |
| TMHMM | 167 | 186 | 20 | - | – | |
| Phobius | 167 | 185 | 19 | - | – | |
| Phobius | 186 | 191 | 6 | - | – | |
| Phobius | 192 | 213 | 22 | - | – | |
| TMHMM | 193 | 212 | 20 | - | – | |
| Phobius | 214 | 224 | 11 | - | – | |
| Phobius | 225 | 249 | 25 | - | – | |
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 250 | 255 | 6 | - | – | |
| Phobius | 256 | 276 | 21 | - | – | |
| Phobius | 277 | 281 | 5 | - | – | |
| TMHMM | 282 | 301 | 20 | - | – | |
| Phobius | 282 | 301 | 20 | - | – | |
| Phobius | 302 | 346 | 45 | - | – | |
| MobiDBLite | 303 | 346 | 44 | - | – | |
| MobiDBLite | 303 | 329 | 27 | - | – | |
| MobiDBLite | 330 | 346 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0553400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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