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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0554000 |
| Transcript ID | LotjaGi1g1v0554000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G16480.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650; TrEMBL-Plants: tr|G7IZF9|G7IZF9_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi1g1v0554000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108593555..108597042) extracted from Lotus japonicus Gifu genome v1.2.
CACCAAGGCAACCCGCGCCCCTCCCTGAAATCAATCTCAGCTCAACCAACTTCTCTGTTATCTGTTATTTACTGTTGCTT CATTCTGCAAACTTGCTTGTCTTATCTGATATTCATTGTTGGATCAATCAGACTATGGGATGGGATGACAACAAATAATT TGGCAGTGACCCATTTGCAGTTTTTATTTACCAGGCTTCATTATTTGGCTAGGCATTGTAGAAGAAACCTTTCTACTCTT GCTCTAGTTCACACTCAGAACCAGAACCAGTTCAATACATGTACAAAACAAAAAGGTGGCTTCTATTGCCCTCTCAAAGA CCACCCTAACCCCCAACTTTCATGCTTTCCTCAAAAGGGTTTCTCACAAATCACTCAACAAATTCTTGGCAAAGCATTGC ATGCCTTTTGTGTCAAAGGTGTTATTCAACTTTCTACATTCGATGCAAACACCTTGGTTACCATGTACTCTAAGCTTGGT AACATTCAATATGCACATCACGTATTCGATAAAATGCAAAACAGAAATGAAGCTTCTTGGAATAACATGATGTCGGGCTT TGTTCGAGTTCGTTGCTACCATGAAGCAATGCAATTCTTCTGCTACATGTGTCAATATGGTGTCAAGCCTACCGGTTATG TTGTTTCTAGTTTGGTGTCTGCCTTTGCTAGATCAGGGTACATTACTGAAGAGGCACTTCAGATTCATGGCTATGTTGTC AAATGCGGTTTGATGTCTGATGTGTTCGTTGCTACTTCTCTGCTGCACTTTTACGGTACTTATGGTGACGTTTCTGAGGC TAACAAACTCTTTGAAGAGATTGATGAACCGAATATAGTCTCGTGGACAACTTTGATGGTTGGCTATGCAGATAAAGGGC ATCTAAAAGAAGTTATAGATACTTACCAGCATTTGAGACGCAGTGGGTTACATTGTAATCAAAATACAATGGCTACAGTT ATTAGAACCTGTGGAATGCTCGCGGATAAAACCTTGGGCTATCAGATACTGGGAAATGTAATCAAATCTGGATTAGAAAC TAGTGTATCTGTGGCAAACTCCCTTATATCCATGTTTGGTAATTGCGATGATGTAGAGGAGGCGTCTTGTGTGTTTGATA ACATGAAGGAACGTGACACTATTTCATGGAATTCAATCATTACTGCAAGTGTACATAATGGGCATTTTGAAGAATCTCTA GGGCACTTTTTTCGGATGCGTCATACTCACACAGAAACAAATTATATTACCATGTCAACCTTGTTATCTGCATGTGGCTC TGCACAAAATTTGAGGTGGGGAAGAGGACTTCACGGTCTAATAGTAAAATCTGGACTAGAATCAAATGTTTGTGTATGCA ATAGTCTTTTGAGTATGTATTCTCAGGGTGGAAAATCTGAGGATGCAGAGTTTGTATTTCATGCAATGCCAGAGAAAGAT TTAATTTCATGGAATTCCATGATGGCAGGCTACGTTGAGGATGGAAAGCATCAGCGTGCCATGCGACTTTTAATTGAGAT GCTCCAAACAAAAAGGGCAATGAACTACGTTACTTTCACCACTGCATTATCTGCCTGTTACAGTTTAGAAAAAGTAAAGA ATGCTCACGCCTATGTTATTCTTTTTGGGCTACATCACAATTCGATCATAGGTAACACATTGGTGACCATGTATGGGAAG TTTGGCTCGATGGCTGAAGCACGTCGGGTATGCAAAATTATGCCTAAGAGAGATGTGGTAACTTGGAATGCATTGATTGG TAGCCATGCTGATAACGAAGAACCAAATGCAGCAATTGAAGCTTTCAATTTATTGAGAGAAGAAGGTATGCCTGTAAACT ACATCACCATTCTTAATCTTCTCAGTGCTTGTTTGTCTCCCAACTATCTTTTAGGACATGGAATGCCGATCCATGCACAC ATAGTTGTGGCAGGCTTTGAGTTAGATACACATATCCAAAGCTCCCTAATTACAATGTATTCCCAATGCGGTGATCTTAA TTCTAGTTACTACATTTTTGATGTATTAACTAATAAGAATTCTAGCACTTGGAATGCCATTCTTTCAGCACATTGTCATT TTGGGCCTGGTGAGGAGGCACTAAAACTTATTGCAAATATGCGAAATGATGGTGTTCAGTTAGACCAGTTTAGCTTCTCT GCAGCTCTTGCTGTTATCGGTAACTTGACGGTACTGGATGAAGGTCAGCAGCTTCATAGCTTGATTATTAAACTTGGGCT TGAGTCAAATGATTATGTTCTAAATGCTACAATGGATATGTATGGAAAATGTGGGGAAATTGATGATGTCTTTAGAATCC TTCCCCCACCAAGAAGCAGGTCACAGAGGTCTTGGAACATTATAATATCAGCATTAGCCAGACATGGGCTTTTCCACCAG GCTAGGAAGGCCTTTCATGAGATGCTTGATCTGGGACTGAGACCTGATCATGTCACTTTTGTTTCTCTTCTGTCTGCATG CAGCCATGGGGGGTTGGTGGATGAGGGTCTTGCATACTTCTCTTCAATGACTACTGAATTTGGTGTCCCCGTTGGAATAG AGCATTGTGTATGCATAATTGATCTTCTTGGGCGTTCTGGAAGGCTTGCGGAGGCTGAAACTTTTATTAACAAGATGCCG ATTCCACCAAATGACCTCGTGTGGCGTAGCCTGTTAGCTGCGTGTAAAACTCATGGTGATTTGGACCGTGGAAGGAAAGC AGCTAACCGTCTTTTTGAGCTGGACTCATCCGATGATTCAGCATATGTTCTTTACTCCAATGTCTGTGCATCTACCAGAA GGTGGGGAGATGTAGAGAATGTGAGAAAGCAAATGGAAACACAAAACATTAAGAAGAAACCTGCCTGTAGTTGGATCAAG TTGAAAAACAAGGTTACTTCTTTCGGAATGGGAGACCATTTTCATCCACAAGTAGCACAAATCGATGCAAAGTTGGAGGA GCTCAAGAAGATGATTAGAGAGGCAGGCTATGTGCCTGACACAAGCTATGTTTTGCAAGATACAGATGAAGAACAAAAGG AGCATAATCTTTGGAATCATAGTGAGAGAATTGCACTTGCATTTGGGTTGATCAATAGTCCAGAAGGCTCACCTATTAGA ATTTTCAAGAATATCCGTGTTTGTGGTGATTGCCACTCTGTTTTCAAGCTAGTTAGTGAAATTATTGGTAGGAAAATCAC ATTACGAGATGCATATAGGTTTCACCATTTTAATGATGGCAAGTGCTCTTGTTCAGACTATTGGTAGTGGATTGGATTTT GTTAGATCATGTAGTAGTTAAAAAATGATGTTTTAGGATTTTTAGAGTGACCAAATTTTTCTGGAAGGTTTAATTTCTTC AATGATGGAAAAGAAAAAGATAAATTTTAAGGTTTACATCAGTTTGGTTTTGAATCTTCTTCTTCCCCTTGCCCAGAAGC CGTAGAAGACTGGGTTCTAATTTTATTTTATTTTTTGGGAAAAGGGGC
CDS sequence (LotjaGi1g1v0554000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAACAAATAATTTGGCAGTGACCCATTTGCAGTTTTTATTTACCAGGCTTCATTATTTGGCTAGGCATTGTAGAAG AAACCTTTCTACTCTTGCTCTAGTTCACACTCAGAACCAGAACCAGTTCAATACATGTACAAAACAAAAAGGTGGCTTCT ATTGCCCTCTCAAAGACCACCCTAACCCCCAACTTTCATGCTTTCCTCAAAAGGGTTTCTCACAAATCACTCAACAAATT CTTGGCAAAGCATTGCATGCCTTTTGTGTCAAAGGTGTTATTCAACTTTCTACATTCGATGCAAACACCTTGGTTACCAT GTACTCTAAGCTTGGTAACATTCAATATGCACATCACGTATTCGATAAAATGCAAAACAGAAATGAAGCTTCTTGGAATA ACATGATGTCGGGCTTTGTTCGAGTTCGTTGCTACCATGAAGCAATGCAATTCTTCTGCTACATGTGTCAATATGGTGTC AAGCCTACCGGTTATGTTGTTTCTAGTTTGGTGTCTGCCTTTGCTAGATCAGGGTACATTACTGAAGAGGCACTTCAGAT TCATGGCTATGTTGTCAAATGCGGTTTGATGTCTGATGTGTTCGTTGCTACTTCTCTGCTGCACTTTTACGGTACTTATG GTGACGTTTCTGAGGCTAACAAACTCTTTGAAGAGATTGATGAACCGAATATAGTCTCGTGGACAACTTTGATGGTTGGC TATGCAGATAAAGGGCATCTAAAAGAAGTTATAGATACTTACCAGCATTTGAGACGCAGTGGGTTACATTGTAATCAAAA TACAATGGCTACAGTTATTAGAACCTGTGGAATGCTCGCGGATAAAACCTTGGGCTATCAGATACTGGGAAATGTAATCA AATCTGGATTAGAAACTAGTGTATCTGTGGCAAACTCCCTTATATCCATGTTTGGTAATTGCGATGATGTAGAGGAGGCG TCTTGTGTGTTTGATAACATGAAGGAACGTGACACTATTTCATGGAATTCAATCATTACTGCAAGTGTACATAATGGGCA TTTTGAAGAATCTCTAGGGCACTTTTTTCGGATGCGTCATACTCACACAGAAACAAATTATATTACCATGTCAACCTTGT TATCTGCATGTGGCTCTGCACAAAATTTGAGGTGGGGAAGAGGACTTCACGGTCTAATAGTAAAATCTGGACTAGAATCA AATGTTTGTGTATGCAATAGTCTTTTGAGTATGTATTCTCAGGGTGGAAAATCTGAGGATGCAGAGTTTGTATTTCATGC AATGCCAGAGAAAGATTTAATTTCATGGAATTCCATGATGGCAGGCTACGTTGAGGATGGAAAGCATCAGCGTGCCATGC GACTTTTAATTGAGATGCTCCAAACAAAAAGGGCAATGAACTACGTTACTTTCACCACTGCATTATCTGCCTGTTACAGT TTAGAAAAAGTAAAGAATGCTCACGCCTATGTTATTCTTTTTGGGCTACATCACAATTCGATCATAGGTAACACATTGGT GACCATGTATGGGAAGTTTGGCTCGATGGCTGAAGCACGTCGGGTATGCAAAATTATGCCTAAGAGAGATGTGGTAACTT GGAATGCATTGATTGGTAGCCATGCTGATAACGAAGAACCAAATGCAGCAATTGAAGCTTTCAATTTATTGAGAGAAGAA GGTATGCCTGTAAACTACATCACCATTCTTAATCTTCTCAGTGCTTGTTTGTCTCCCAACTATCTTTTAGGACATGGAAT GCCGATCCATGCACACATAGTTGTGGCAGGCTTTGAGTTAGATACACATATCCAAAGCTCCCTAATTACAATGTATTCCC AATGCGGTGATCTTAATTCTAGTTACTACATTTTTGATGTATTAACTAATAAGAATTCTAGCACTTGGAATGCCATTCTT TCAGCACATTGTCATTTTGGGCCTGGTGAGGAGGCACTAAAACTTATTGCAAATATGCGAAATGATGGTGTTCAGTTAGA CCAGTTTAGCTTCTCTGCAGCTCTTGCTGTTATCGGTAACTTGACGGTACTGGATGAAGGTCAGCAGCTTCATAGCTTGA TTATTAAACTTGGGCTTGAGTCAAATGATTATGTTCTAAATGCTACAATGGATATGTATGGAAAATGTGGGGAAATTGAT GATGTCTTTAGAATCCTTCCCCCACCAAGAAGCAGGTCACAGAGGTCTTGGAACATTATAATATCAGCATTAGCCAGACA TGGGCTTTTCCACCAGGCTAGGAAGGCCTTTCATGAGATGCTTGATCTGGGACTGAGACCTGATCATGTCACTTTTGTTT CTCTTCTGTCTGCATGCAGCCATGGGGGGTTGGTGGATGAGGGTCTTGCATACTTCTCTTCAATGACTACTGAATTTGGT GTCCCCGTTGGAATAGAGCATTGTGTATGCATAATTGATCTTCTTGGGCGTTCTGGAAGGCTTGCGGAGGCTGAAACTTT TATTAACAAGATGCCGATTCCACCAAATGACCTCGTGTGGCGTAGCCTGTTAGCTGCGTGTAAAACTCATGGTGATTTGG ACCGTGGAAGGAAAGCAGCTAACCGTCTTTTTGAGCTGGACTCATCCGATGATTCAGCATATGTTCTTTACTCCAATGTC TGTGCATCTACCAGAAGGTGGGGAGATGTAGAGAATGTGAGAAAGCAAATGGAAACACAAAACATTAAGAAGAAACCTGC CTGTAGTTGGATCAAGTTGAAAAACAAGGTTACTTCTTTCGGAATGGGAGACCATTTTCATCCACAAGTAGCACAAATCG ATGCAAAGTTGGAGGAGCTCAAGAAGATGATTAGAGAGGCAGGCTATGTGCCTGACACAAGCTATGTTTTGCAAGATACA GATGAAGAACAAAAGGAGCATAATCTTTGGAATCATAGTGAGAGAATTGCACTTGCATTTGGGTTGATCAATAGTCCAGA AGGCTCACCTATTAGAATTTTCAAGAATATCCGTGTTTGTGGTGATTGCCACTCTGTTTTCAAGCTAGTTAGTGAAATTA TTGGTAGGAAAATCACATTACGAGATGCATATAGGTTTCACCATTTTAATGATGGCAAGTGCTCTTGTTCAGACTATTGG TAG
Protein sequence (LotjaGi1g1v0554000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTNNLAVTHLQFLFTRLHYLARHCRRNLSTLALVHTQNQNQFNTCTKQKGGFYCPLKDHPNPQLSCFPQKGFSQITQQI LGKALHAFCVKGVIQLSTFDANTLVTMYSKLGNIQYAHHVFDKMQNRNEASWNNMMSGFVRVRCYHEAMQFFCYMCQYGV KPTGYVVSSLVSAFARSGYITEEALQIHGYVVKCGLMSDVFVATSLLHFYGTYGDVSEANKLFEEIDEPNIVSWTTLMVG YADKGHLKEVIDTYQHLRRSGLHCNQNTMATVIRTCGMLADKTLGYQILGNVIKSGLETSVSVANSLISMFGNCDDVEEA SCVFDNMKERDTISWNSIITASVHNGHFEESLGHFFRMRHTHTETNYITMSTLLSACGSAQNLRWGRGLHGLIVKSGLES NVCVCNSLLSMYSQGGKSEDAEFVFHAMPEKDLISWNSMMAGYVEDGKHQRAMRLLIEMLQTKRAMNYVTFTTALSACYS LEKVKNAHAYVILFGLHHNSIIGNTLVTMYGKFGSMAEARRVCKIMPKRDVVTWNALIGSHADNEEPNAAIEAFNLLREE GMPVNYITILNLLSACLSPNYLLGHGMPIHAHIVVAGFELDTHIQSSLITMYSQCGDLNSSYYIFDVLTNKNSSTWNAIL SAHCHFGPGEEALKLIANMRNDGVQLDQFSFSAALAVIGNLTVLDEGQQLHSLIIKLGLESNDYVLNATMDMYGKCGEID DVFRILPPPRSRSQRSWNIIISALARHGLFHQARKAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMTTEFG VPVGIEHCVCIIDLLGRSGRLAEAETFINKMPIPPNDLVWRSLLAACKTHGDLDRGRKAANRLFELDSSDDSAYVLYSNV CASTRRWGDVENVRKQMETQNIKKKPACSWIKLKNKVTSFGMGDHFHPQVAQIDAKLEELKKMIREAGYVPDTSYVLQDT DEEQKEHNLWNHSERIALAFGLINSPEGSPIRIFKNIRVCGDCHSVFKLVSEIIGRKITLRDAYRFHHFNDGKCSCSDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 78 | 183 | 106 | 1.8E-142 | – | |
| Gene3D | 81 | 182 | 102 | 7.3E-17 | ||
| ProSiteProfiles | 97 | 127 | 31 | 7.706 | ||
| Pfam | 128 | 176 | 49 | 3.3E-8 | ||
| ProSiteProfiles | 128 | 162 | 35 | 11.093 | ||
| TIGRFAM | 131 | 163 | 33 | 2.4E-6 | ||
| ProSiteProfiles | 163 | 198 | 36 | 7.498 | ||
| Gene3D | 183 | 283 | 101 | 5.6E-16 | ||
| PANTHER | 186 | 281 | 96 | 1.8E-142 | – | |
| ProSiteProfiles | 199 | 229 | 31 | 7.037 | ||
| ProSiteProfiles | 230 | 264 | 35 | 9.635 | ||
| TIGRFAM | 232 | 265 | 34 | 0.0019 | ||
| Pfam | 232 | 262 | 31 | 0.0071 | ||
| ProSiteProfiles | 265 | 299 | 35 | 5.349 | ||
| PANTHER | 267 | 381 | 115 | 1.8E-142 | – | |
| Gene3D | 284 | 384 | 101 | 4.6E-17 | ||
| ProSiteProfiles | 300 | 334 | 35 | 8.44 | ||
| TIGRFAM | 305 | 331 | 27 | 0.002 | ||
| Pfam | 305 | 330 | 26 | 0.0031 | ||
| Pfam | 333 | 359 | 27 | 0.027 | ||
| ProSiteProfiles | 366 | 400 | 35 | 6.555 | ||
| PANTHER | 385 | 487 | 103 | 1.8E-142 | – | |
| Gene3D | 385 | 490 | 106 | 1.2E-19 | ||
| ProSiteProfiles | 401 | 431 | 31 | 8.583 | ||
| Pfam | 431 | 478 | 48 | 5.1E-8 | ||
| ProSiteProfiles | 432 | 466 | 35 | 9.832 | ||
| TIGRFAM | 434 | 461 | 28 | 0.0016 | ||
| PANTHER | 486 | 576 | 91 | 1.8E-142 | – | |
| Gene3D | 491 | 582 | 92 | 9.0E-14 | ||
| ProSiteProfiles | 499 | 529 | 31 | 6.96 | ||
| Pfam | 504 | 530 | 27 | 0.82 | ||
| ProSiteProfiles | 530 | 564 | 35 | 9.536 | ||
| Pfam | 532 | 561 | 30 | 0.012 | ||
| TIGRFAM | 532 | 565 | 34 | 0.001 | ||
| Gene3D | 583 | 730 | 148 | 6.1E-22 | ||
| PANTHER | 586 | 694 | 109 | 1.8E-142 | – | |
| ProSiteProfiles | 601 | 631 | 31 | 6.182 | ||
| Pfam | 631 | 673 | 43 | 9.6E-8 | ||
| ProSiteProfiles | 632 | 666 | 35 | 10.654 | ||
| TIGRFAM | 635 | 667 | 33 | 5.2E-4 | ||
| ProSiteProfiles | 667 | 701 | 35 | 5.842 | ||
| PANTHER | 687 | 897 | 211 | 1.8E-142 | – | |
| ProSiteProfiles | 702 | 732 | 31 | 5.59 | ||
| Gene3D | 731 | 939 | 209 | 6.2E-32 | ||
| ProSiteProfiles | 733 | 767 | 35 | 11.86 | ||
| Pfam | 736 | 780 | 45 | 3.5E-10 | ||
| TIGRFAM | 736 | 768 | 33 | 4.9E-8 | ||
| ProSiteProfiles | 768 | 802 | 35 | 8.473 | ||
| ProSiteProfiles | 804 | 834 | 31 | 5.415 | ||
| ProSiteProfiles | 836 | 866 | 31 | 5.404 | ||
| ProSiteProfiles | 870 | 904 | 35 | 6.423 | ||
| Pfam | 907 | 1029 | 123 | 1.6E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0554000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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