Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0554200 |
| Transcript ID | LotjaGi1g1v0554200.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Callose synthase-like protein; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|I1KZH4|I1KZH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0554200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108639868..108641390) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGGCACGTGGCTGTTTGCTCCCTTCTTGTTCAATCCCTCTGGGTTTGAATGGCAAAAAATTGTTGATGATTGGAC TGATTGGAATAAATGGATTAGTAACCGAGGAGGTATAGGTGTACCACCTGAAAAAAGTTGGGAATCTTGGTGGGAAGAGG AACAAGATCATCTCCACTATTCAGGATTGCGTGGAATCATAGTGGAGATATTGTTATCATTGCGATTCTTTATCTACCAG TATGGTCTTGTATATCACTTGAAATTTACAAAGAAGGGCGACAAAAGTTTTCTGGTAAGTCTTAACCTATGTTGCCCCTT TTTTCCTACTTTTTATGTGACCATAATTTGGTAAGTTTAGTGGTATAATGGATATCTTTTCCTTGGTTAACAGGTATATG GCATTTCGTGGTTGGTGATCTTTGTAATATTGTTTGTGATGAAGGTTGGTGACAAACTACTGCTTATTAGGGACATGTCA TAATTTTACATTTATGCTTCATTATTATACACATTATATTTTCTCACTGGAGTCTTTGCGCACCTGTCTATGGTGTGGGT TGGAGGAGTTTTCTTATATTGAGTTTAGTAATATAAGGACAGCCCTGTTCATTTTCTTGCCTACAAAATGTAGACACTAC TTTCTTTTGGTCTAACAAATTCCATTTTTCCTTTTTTTGTTGTTGTCTCAGACTGTGTCCGTTGGGAGGCGGAAATTCAG TGCAAATTTTCAACTTGTCTTCCGGCTAATCAAGGGAATGATATTCCTAACTTTTGTCTCTATTCTTGTTACTTTGATTG CCCTTCCACATATGACATTGCAGGACATTGTTGTTTGCATTCTTGCGTTCATGCCAACTGGTTGGGGAATGCTACAGGTA GATTCTCTTTCCACTTCTTTAGTAAATTAATGAATGTTATTTTGAGGCCCCCTCTGCTTTATCCCCAATTATTATCATTT TTTAATTTAGTTATTTGTGAAATTTTGGTAACAACAAAGCACAACCTAGAAGGTGAAAGATCGGCTCATGTTATATCCCC CATCTATTAGTTTGAATGTGAGCCAAAGAGACTGAACTGTTGGTTGGACTTGTAAACTCACATTAGCATTAGCTTTTGAT TTTAAAAAATCTGATTATGTCTCAAATTAGGGACATATTTGTGTATAATCTTAGTAGTGTGGTATAAGATAAATTGTACT ATTGAGTTATCTTTATTTCCTTCAATTTGTTTTTGGTTTTAGTCTTTGTTTATCATTGCTATTTCTTTTTGCAGATTGCT CAAGCATTAAAACCCCTTGTACGCCGTGCTGGATTTTGGGGATCAGTAAAAACTCTTGCTCGCGGATATGAGATTGTGAT GGGTTTGCTTTTGTTCACTCCTGTTGCTTTTCTGGCTTGGTTTCCTTTTGTTTCAGAGTTTCAAACCCGTATGCTGTTCA ACCAAGCGTTCAGCAGAGGTTTGCAAATTTCTCGTATTCTTGGAGGTCAAAGGAAGGAGCGATCATCTCGCAACAAGGAA TAG
CDS sequence (LotjaGi1g1v0554200.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGACTGATTGGAATAAATGGATTAGTAACCGAGGAGGTATATGGCATTTCGTGGTTGGTGATCTTTGTAATATT GTTTGTGATGAAGACTGTGTCCGTTGGGAGGCGGAAATTCAGTGCAAATTTTCAACTTGTCTTCCGGCTAATCAAGGGAA TGATATTCCTAACTTTTGTCTCTATTCTTGTTACTTTGATTGCCCTTCCACATATGACATTGCAGGACATTGTTGTTTGC ATTCTTGCGTTCATGCCAACTGGTTGGGGAATGCTACAGATTGCTCAAGCATTAAAACCCCTTGTACGCCGTGCTGGATT TTGGGGATCAGTAAAAACTCTTGCTCGCGGATATGAGATTGTGATGGGTTTGCTTTTGTTCACTCCTGTTGCTTTTCTGG CTTGGTTTCCTTTTGTTTCAGAGTTTCAAACCCGTATGCTGTTCAACCAAGCGTTCAGCAGAGGTTTGCAAATTTCTCGT ATTCTTGGAGGTCAAAGGAAGGAGCGATCATCTCGCAACAAGGAATAG
Protein sequence (LotjaGi1g1v0554200.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGLIGINGLVTEEVYGISWLVIFVILFVMKTVSVGRRKFSANFQLVFRLIKGMIFLTFVSILVTLIALPHMTLQDIVVC ILAFMPTGWGMLQIAQALKPLVRRAGFWGSVKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISR ILGGQRKERSSRNKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 15 | 171 | 157 | 2.2E-85 | ||
| Phobius | 15 | 34 | 20 | - | – | |
| PANTHER | 15 | 171 | 157 | 2.2E-85 | – | |
| TMHMM | 15 | 34 | 20 | - | – | |
| Phobius | 35 | 45 | 11 | - | – | |
| Phobius | 46 | 68 | 23 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 69 | 73 | 5 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 74 | 98 | 25 | - | – | |
| Phobius | 99 | 117 | 19 | - | – | |
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 118 | 138 | 21 | - | – | |
| Phobius | 139 | 175 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | 1,3-beta-D-glucan synthase activity | Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). |
Expression pattern of LotjaGi1g1v0554200.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…