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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0554500 |
| Transcript ID | LotjaGi1g1v0554500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pirin-like protein; TAIR: AT2G43120.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SEE4|PIRL_SOLLC Pirin-like protein; TrEMBL-Plants: tr|I1N5F6|I1N5F6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0554500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108677960..108680572) extracted from Lotus japonicus Gifu genome v1.2.
TCTATTTTACTATTTTACTATGATCGAATCTTAAGGGTTTAAATCCAAAAGCAGTACAATTCAGGGGAAAAAAAACTTTA TCACCAAACGACCCTTACATTAGGAATTAGTTTCTTTTTTTTTCATTCTTTAGCAGGAACTTAGGTTTATTCTTAATATG TTTTTGTTTTCAGGCTATATGCAATACATCCTAACAAAATATACCAGACAGATATCCAAATTCCAAGCCCAACCACTGGT CACACACACATGTGAATGAGATCATATGAATTTGATTTGATTCAAGAAAGGAGGCCCTCATCATGATGACAAGAGGTTGA TGTCATCTTCATGATTGATCAAATGAGAGAAAGTGGTCCCCACCCCCACGCTTCCAATTCAATTCCCAAATGTCAGACCC AACTAGCCAGCCATCTTTTGTGTTCTTTCCACATTCTCACATTCATCCAAATCAATCTCATAACTATATATATATCCCCA CCCAATGTTCACATACACATATTCACGCACGCAAATACAGCTAGCTTATGAGAATAAGGCAACAATTTTCACTGCTTATT ACTAATATCAGAAGATCTCTTCCACCTGTTAGAAATATCATCATGTCATCAGAATCTGATCATTCCCCTGCTTTCAATAC CCCCAGATTGGTTCTCAAGAAGGTTTTGGCCAAATCTCAAAGAGAAGGAGATGGGGCTGTTGTTAGAAGAGGCATTGGAA GGTATCTTCATTCTTTCATTTTTCTATTATATAACTTGTTGACCAAATCTCATTTTTCTTTTCTTTTACGGATTGATTTG ATATCTGATTGATTCACAGGAGCGAGTTGAAGAACTTGGACCCCTTTTTAATGTTGGATCACTTCTCAGGTACAATTCTG TGTTTGTGCTGAGACCCTATTGGTTCAAGTTTAACTACTTTTTAACCACTTGTGTTATGTAACCAACATTTTTATTTAGT ATTCTAAGACCGCGTTTTGTGTTGACTTTGCAGTGTCTCCACCTGGAGGCTTCCCTGATCATCCACACAGAGGTTTTTTT TCTTATCATGTTTTCATTGCCCTGCTATTGAAAACCTTTTGGCTATTTTGTTTCCTTATATTTTGATTTGCATATGTTTT GCAGGTTTTGAGACCGTCACCTACATGCTAGAGGTATAGTTAGTTACCTTACACTATACGTAACTTTAAACTATGGTTGT AACTTGTAACTTGTAATTGCCCAGTTGGCTAAATGTTTTTGTGGATTTCAGGGAGCCATAACTCACCAAGATTTTGCTGG ACACAAGGGTACAATAGGGCCTGGTGATGTTCAGGTAACAACATTAATTAATGATAGTGATTCAAAAGCTATACCCAAGA GAAGATTAATTGGAATTTGATGGTTAAAGTGCATGTTTGAAAATCAATCTACAATTGTTTTTAAAGTCACAATCAATTCT GGAGAAAAACTTATGTGAGAAACTGATGCAAACATGCTAAATTTTTTGTGCAGTGGATGACCGCGGGCAGGGGAATTGTT CACTCAGAAATGCCTGGAGAAGCAACCAACAAGGGATTGCAGCTATGGATCAATTTATCAGCTAAGGACAAAATGTAACA TACTAACATGTCCTATTGGCCAATGTTTTCTGGAGGATTTATATGATCATTATGTGACATGCTATTTATTTTCTATTTTT TCTTTGACTTTTGATTCAGGATTGAACCAAATTATCAAGAACTTCTAAGTGATAACATACCAACTGCAGAGAAAGATGGG GTAGAAGTGAGGGTTATAGCAGGAGAAGCAATGGGAGTCCATTCACCTGTCTACACCAGAACTCCAACCATGTACCTTGT TTTCACCATGATGCCAGGATCTGAGTGGCATCAGAGTATTCCAGAGTCATGGAATTCATTTGTCTATGTGTTTGAAGGGG AAGGAGTTTTTGGGTCTCCAAGTTCATCACCAACTATGCCATACCATGTCCTTGTTTTGAGCCTAGGTGATGGCCTTAGT GTGTGGAATAACTCATCAAAGCCTTTGAAATTTGTGCTGATTGGAGGACAACCAATTAATGAGCCAGTTGTTCAGTATGG GCCTTTTGTGATGAATACACAGTCTGAAATTGAGAAAACCATTGAAGACTATCAATATGGGAAGAATGGGTTTGAGATGA GGAATAATTGGAGATCTCAATAGTTGGTCAGAGTTAAGTGTATGATATCTGATAGTGATGTGTATGTGAAAAATAAGAAG GTTGCTTTCATTGTCATAATAAGCAGATATAAGCTTAGCTATCAAAGTAGTAGGAGCTGAAAAGAAATCTTGCTTTTTCT ATCATTTCATTTCTTCCATGTATCAAAAACTTCTAGAAGATCCAAATTGCTGCTGGGGCAACTACTTTAGGTTGTCTTGA AGTCATCATGGGTCAGCTTATCTTAAACCTTTCTTTCTTTCTCTGATTCACTTTCTTCCCTTGCTTCATTTTCAATGGCT TTCTTATTTGTTTCAAATCTCTTGTTCTTTTTATGGTTACTTGTAAGTTGAAATAGAAAAAAAAAAAATCTTGGTTAATT TGTTAATAAAATGAAATAAGTCTATTCTTATCAATTTATTAAGTAATTAGGAG
CDS sequence (LotjaGi1g1v0554500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATAAGGCAACAATTTTCACTGCTTATTACTAATATCAGAAGATCTCTTCCACCTGTTAGAAATATCATCATGTC ATCAGAATCTGATCATTCCCCTGCTTTCAATACCCCCAGATTGGTTCTCAAGAAGGTTTTGGCCAAATCTCAAAGAGAAG GAGATGGGGCTGTTGTTAGAAGAGGCATTGGAAGGAGCGAGTTGAAGAACTTGGACCCCTTTTTAATGTTGGATCACTTC TCAGTGTCTCCACCTGGAGGCTTCCCTGATCATCCACACAGAGGTTTTGAGACCGTCACCTACATGCTAGAGGGAGCCAT AACTCACCAAGATTTTGCTGGACACAAGGGTACAATAGGGCCTGGTGATGTTCAGTGGATGACCGCGGGCAGGGGAATTG TTCACTCAGAAATGCCTGGAGAAGCAACCAACAAGGGATTGCAGCTATGGATCAATTTATCAGCTAAGGACAAAATGATT GAACCAAATTATCAAGAACTTCTAAGTGATAACATACCAACTGCAGAGAAAGATGGGGTAGAAGTGAGGGTTATAGCAGG AGAAGCAATGGGAGTCCATTCACCTGTCTACACCAGAACTCCAACCATGTACCTTGTTTTCACCATGATGCCAGGATCTG AGTGGCATCAGAGTATTCCAGAGTCATGGAATTCATTTGTCTATGTGTTTGAAGGGGAAGGAGTTTTTGGGTCTCCAAGT TCATCACCAACTATGCCATACCATGTCCTTGTTTTGAGCCTAGGTGATGGCCTTAGTGTGTGGAATAACTCATCAAAGCC TTTGAAATTTGTGCTGATTGGAGGACAACCAATTAATGAGCCAGTTGTTCAGTATGGGCCTTTTGTGATGAATACACAGT CTGAAATTGAGAAAACCATTGAAGACTATCAATATGGGAAGAATGGGTTTGAGATGAGGAATAATTGGAGATCTCAATAG
Protein sequence (LotjaGi1g1v0554500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIRQQFSLLITNIRRSLPPVRNIIMSSESDHSPAFNTPRLVLKKVLAKSQREGDGAVVRRGIGRSELKNLDPFLMLDHF SVSPPGGFPDHPHRGFETVTYMLEGAITHQDFAGHKGTIGPGDVQWMTAGRGIVHSEMPGEATNKGLQLWINLSAKDKMI EPNYQELLSDNIPTAEKDGVEVRVIAGEAMGVHSPVYTRTPTMYLVFTMMPGSEWHQSIPESWNSFVYVFEGEGVFGSPS SSPTMPYHVLVLSLGDGLSVWNNSSKPLKFVLIGGQPINEPVVQYGPFVMNTQSEIEKTIEDYQYGKNGFEMRNNWRSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 319 | 289 | 2.3E-157 | – | |
| PANTHER | 31 | 319 | 289 | 2.3E-157 | – | |
| PIRSF | 38 | 317 | 280 | 3.4E-103 | ||
| SUPERFAMILY | 40 | 317 | 278 | 1.57E-93 | ||
| Gene3D | 53 | 304 | 252 | 7.3E-107 | ||
| Pfam | 59 | 151 | 93 | 7.1E-33 | ||
| Gene3D | 173 | 278 | 106 | 7.3E-107 | ||
| Pfam | 204 | 309 | 106 | 7.2E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0554500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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