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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0555300 |
| Transcript ID | LotjaGi1g1v0555300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|K7MVM2|K7MVM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0555300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108776226..108781646) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATGAATAATGGGGATAGGGGGTAGGGTAATGATATAATATTGAATTTGTTAGCGTAAGCAGTGGAAGCGGTTGAA GAAAGAAGAATTGAGAATTGACCTTATTGATGGAAGGGGCATACGCATTTGCCATTGTTGACTGACTCCAATTTTCAATA TTTGCAGCATTCTTTTCATTATTACATCCCTGAATTGAGTGGCTAACACAACGAAGAAAGAAGAACCACATCCATCATCT CCATCTATCGATCCATCCATCCATCGATCCATCTATCTGTGTGCTTGATTTGATTTGATTTGATTTGATTGCATTCTGTG TCTGTCGATGAAGAGCTCTCTGAAAAAGTTACGAGGGTTGGGACTTCACAATCACAATCACAATCACAAGCATCATGATT CCAAGACCATTCTGCCTCTGGGTCAGCTAGAAGAGCTTGCTCAGGCTACACGGGTACGCAATCTTCTTCTCTTGTCTTGT CTATCTGATTGATTTGTTAGTTTTAGGGTTTGATGAAATGAAATTGGGATTTCAGGACATGCAAGACATAAGAGACTGCT ACGATACCTTGCTTTCTGCCGCCGCAGCAACTGCCAGCAGTGCTTATGAATTCGCCGAGTCCTTGCGGGACATGGGCTCT TGTCTTCTCGAGAAAACTGCTTTGAATGATCACGAAGAAGAAACTGGAAAAGTTCTGCTCATGCTTGGCAAAATCCAGTT CAAACTTCAGAAACTCATTGATAAATATGTATGTATCTCTCTCTTAATTCCATCTCTATATTTCATTTTCTGCTTCTGCT TCAATTTCATAACTAATTTTTCTGTCTTTCTTTTTTTCCAATTCGCGCAGCGTTCTCATATAATCCAGACAATTACCATT CCATCAGAGTCTCTCCTCAATGAACTTCGAATTGTTGAGGTTAGTTTCCAGCTTCTTATAACTCCTCTTTGTTACTTCAT TGAATTTTCAAATTCATTATCCTGCCTCAGTTAAAGGCTTTACTCATTACAAGGTTTTTAACATCTGGATTTTATTTTTT GTAAGCGTGCGTTTATGCAATATAAAGGGGCCTCACATGAATATTAATTAACTATAGCTGAGACATCCTGATAAAATCTT CATAGGAGACTAGAGCTTGAGTGTTCAATGCAGGCTTGTTAATAGCGCGCTATAGCGTAGCACTCTGGGGGTTCACCGCT ATTTGCCGCAATAGCGCTCTAAATAGCGTTTTTTGGGCTTGCCGCTACAGTACGCTATCAGCTGGCTTTCACTTAGATAA ATGGATTAAGTCATGAATTATAGACCAATGAAGGATTTAGACACAAAATGCAATATCACAAGAGTTTCTTCAACTTCTGG ACCTAGAATTCTAGATGTAGCAGAAATTGGATATGTTCTTAAAGAGAGCAATAACAGATCTTTTTGTCTCATCTTTACCA CCTTAATAAACTCATAAGTCTAGTCTTCGGGATGTGGAGACATGTTGTAGGAAGACTGTCAAATGCAGTATGCTTCTGAC ATCTTGAAGGCTTCTTAAAGTTTGTTTTATAAATGTAAATGCTGGTTTAAGTTACAACACTCTGTTTTTGCTACAGCCTA AGAATGTTATTATTATTTTAATTCTGAAATTCATGTCGTCTGGTGAATGCGGTCAACTGGTGGTTATTCAATTTACTGTA TCTTGTTGTGTCATTCAATGTGGTGGACCTTTATTAAATTTGATGAATTTTTTGTTGTCTGGAGCAGGAGATGAAGCGAC AATGTGATGAGAAAAGGTTTGAAATGTTATGTTAGATCTAATCATAATTTTGCTTTGCTTGTAATACATGTCTTCTCATT TTGTTATATGATCTGCAGAGATGTATATGAGTATATGGCAACAAGATTTAGAGAGAGAGGTAGGTCTAAAGGTGGAAAGA CGGAAACTTTTTCGTTGCAGCAGTTGCAAACTGCTCGTGATGAATATGATGAGGAGGCTACATTGTTTGTTTTCCGATTG AAATCTCTGAAACAAGGACAATCACGTAGTCTTCTAACACAGGCAGCACGTCACCATGCTGCTCAGGTTCTTCTATTCTT CTATTTCTTCTTAAGATACGGGTGTTTTTACATTTTAGTTTTTATGTTGACACCTATACTTTCTGTTACCCCAAAACAGT TATGTTTCTTCAAGAAAGCAGTCAAGTCTCTTGAGACAGTAGAACCACATGTAAAATCAGTTACTGAACAGCAACACATT GATTACCACTTCAATGGTCTTGAAGAGGAGGATGGGGATGAAGGTGATGAGGGATATGAAGATGATGATGGTTATGATGA GAATGATGATGGAGAGCTGAGTTTTGACTATGGACAAATTGAACAAGAGCAAGATGTTTCTACATCTCGAAATTCGATGG AGGTGACTAACTTAAGTAACCAGGAATTTATGACCTTTTTCTCCCTCTGCCATGTTTCTTAGATGTCTAATGAAGATCTA CTAACTATATCTACAGTCATAAATATGAGTTGTTTAAACCTTACTGCATGCTAAAGAGAACATAAGTGAAATCAAAATTA AATAGTGAATAAATGCATTCCTGGGGAGAAAGGGCTATGTTATGTAGGCCTTTAGGGGCCAAAGTCTACTAGCATTAGAG TTGTTGGCCGTGTACTTTTATAATTTTATCCAGAGAAACTATACACCCTTGTTTGTTGGAATACCACTAATTGCTATGTG CTTGAGTAATGTAGTTTGATAGGAAAGCTGGCTGGATGAATTGAGCAATAAGAAAACTGGAATATTAGTTCTCTGTTCAA TGCATAAAAGTGCTTTGGAATTTCCACATGAAAAACTTCTGGCTGTGAAACTTTTGGATCCGAACCATATATATTATTTT AATTTTCAAACTTATAAAAAGTAGAAACACTTACTGAGCTTAAGTTCCTCTTATTTTGATGGCATGCTGCTTAACCATGT TTGCTTCCTTACAGTTGGACCAGGTGGAACTTACCCTTCCTAGAGGTTCAACAGCTGAAGCTGCTAAGGTGATAATTATA ATTTCAAAATTTCAATTATCTTTTCTTTCCTTTTCATATGAAATTTGAAATTCGTAAGAGTATATGGCTATATGCATAAT GGGTGTATGTTTTATTTGCAGGAAAATTTAGATAAGCTCCAACGGAATTTGTTTTCCTTTAGGGTTAGGACAGGTAGCCA ATCCGCTCCACTTTTTGCTGATAATAAACCTGATTCTAGTGAAAAACTTAGACAGATGCGCCCGTCTTTATCACGGAAAT TCAGTTCATATGTGCTTCCTACCCCAGTTGATGCAAAGAGTTCAATCTCGTCAGGGTCAAATAATCCAAAACCTTCAAAA ATGCAGACAAATTCAAATGAGGCTACAACGAATCTGTGGCATTCATCCCCACTGGAACAGAAGAAACATGAAACTATTAG AGATGAGTTTTCCAGTCCTACGGTCAGAAATGCACAGTCAGTACTCAAGGAGAGTAACAGCAATACTGCCACCACGCGAT TGCCACCTCCATTGGTAGATGGTCTTTTATCCTCAAATCATGATTATGTTTCTGCCTACTCTAAAAAGATTAAAAGACAT GCCTTTTCTGGCCCATTGACAAGTAATCCTATGCCTACCAGACCTGTCTCAGTAGACAGTGTTCAGATGTTCTCTGGACC TCTTTTGCCAACTCCAATCCCCCAGCCTCCATCGTCATCTCCAAAAGTATCTCCCAGTGCCTCTCCTACTATCGTGTCTT CACCTAAAATAAGTGAGCTTCATGAACTACCAAGGCCTCCAACTAATTTCCCATCCAATTCAAGGCTTTTAGGTCTGGTG GGTTATTCAGGTCCGTTGGTACCCAGAGGGCAAAAGGTTTCCGCTCCAAATAATTTGGTAATTTCAAGTGCAGCATCTCC ACTGCCAATTCCGCCTCAAGCCATGGCTCGTAGTTTCTCCATACCTTCTAGTGGTGCTAGAGTTACTGCATTACATAGTT CAAGTGCGCTAGAATCCTCTCATATATCATCTATATCTGAGGATATCGCTTCTCCTCCTTTGACGCCAATAGCATTATCA AATAGTAGGCCATCATCAGATGGCTAAGGCTGTTGCTCTGGATGTTTAGACCAGAGGTAATTTTTAAACCTGGGTTGTTT TCATTACTTTTTCTTATTTACTATCCTTTTCTTTTCCTGGATTTATTAAGCATTTGCTGTTCATTAAAAGATTTCAACTG TGGGAAGAGGTGAACTTTCATACATAAATGACAAAATTTTCGTTCAATTTGCCTGCTTTGAAATGGATATAATGGAGATG ATGGTTAATTAATTCTATAATATTAAGTACCTGAAAAACCATTGATACGGGGACAGGACAACTGTTATTGAACACAAGTT ATACCTTCAAAATGCCCATAAAAAAAAAGTTACACCTTCAAAATAAACTAGGTGACCACCATACAAATACCTGTTTAGAT ATACACATTGGGATAAAAAATTATTTATGGTGCAAGCTTCGGATATTAAATGAATTTTTACATTTAACTTTGTTCCAAGT TCTTTACATTTTCCTTTTCAAAAAAAGTTCTTTACATTTTCAGGTAGTACATGTAGAAACTCACATCATTGTCTATTTTA TATATAATATGGTTGTTCATAAAACATCTCCAGTAGGTGGCGTACCTGTTTTTTATTTGAGAGGGTGCATAAATTTGGAC ATGATAGGCCAACTTTAATATAGTCAAGGAAATTTTTTTATTTCAAGACTGTCAAATAGGTTTGGTTACAGAAATTGTTG TTTCAAACGATTAAGTACTGTCACTTTGCCATCATAAGGTGATTTAATTTAGAAAAAACCTTATCATTTTTCTTTGTTCT TATACGTACTGCCAAATTTTAGTTTAATTTGGAAGATTTTATCTTCATTCTGTTTTTTAGGGATGTACATCGTTTCATTA ATATTATGCAATTAACCGTGTTTCGATACATCTGCAGGTTTTATGCACATTAATTCCGCTCAGGCCTGATGCTAGCCCTG TTTACGACCTGGCAAATTAAGCATAGGGTCAAGTTTTGCCTAGTTTCAAATCTGTAAATATTCCTCTTACATATAGTAGA TATTCTTTTATCTGTCATCATTATTGTTAATCCAACCTTTATAATGGGGCTTTTTATTACTTTTCCCCAAATAAATGCTC CATCAGTTCTATTGTTAAATCATGCGTTTAAGCAATTGGTAGTAACCCTACTATCATGCCTCCGGCCTCCCCTTTCCAAG CTTATCCTTTCCAAGTTTTGTTTTTTGATATTTGAAGTTTAATCAATTTCTAAGGAAAAAATTAACCACGTAAAAAAATG AGCATTCAACCAAACAAAATCAATCACAATGAGTATCACACAACATGCGAAATTTGACAAA
CDS sequence (LotjaGi1g1v0555300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGCTCTCTGAAAAAGTTACGAGGGTTGGGACTTCACAATCACAATCACAATCACAAGCATCATGATTCCAAGAC CATTCTGCCTCTGGGTCAGCTAGAAGAGCTTGCTCAGGCTACACGGGACATGCAAGACATAAGAGACTGCTACGATACCT TGCTTTCTGCCGCCGCAGCAACTGCCAGCAGTGCTTATGAATTCGCCGAGTCCTTGCGGGACATGGGCTCTTGTCTTCTC GAGAAAACTGCTTTGAATGATCACGAAGAAGAAACTGGAAAAGTTCTGCTCATGCTTGGCAAAATCCAGTTCAAACTTCA GAAACTCATTGATAAATATCGTTCTCATATAATCCAGACAATTACCATTCCATCAGAGTCTCTCCTCAATGAACTTCGAA TTGTTGAGGAGATGAAGCGACAATGTGATGAGAAAAGAGATGTATATGAGTATATGGCAACAAGATTTAGAGAGAGAGGT AGGTCTAAAGGTGGAAAGACGGAAACTTTTTCGTTGCAGCAGTTGCAAACTGCTCGTGATGAATATGATGAGGAGGCTAC ATTGTTTGTTTTCCGATTGAAATCTCTGAAACAAGGACAATCACGTAGTCTTCTAACACAGGCAGCACGTCACCATGCTG CTCAGTTATGTTTCTTCAAGAAAGCAGTCAAGTCTCTTGAGACAGTAGAACCACATGTAAAATCAGTTACTGAACAGCAA CACATTGATTACCACTTCAATGGTCTTGAAGAGGAGGATGGGGATGAAGGTGATGAGGGATATGAAGATGATGATGGTTA TGATGAGAATGATGATGGAGAGCTGAGTTTTGACTATGGACAAATTGAACAAGAGCAAGATGTTTCTACATCTCGAAATT CGATGGAGTTGGACCAGGTGGAACTTACCCTTCCTAGAGGTTCAACAGCTGAAGCTGCTAAGGAAAATTTAGATAAGCTC CAACGGAATTTGTTTTCCTTTAGGGTTAGGACAGGTAGCCAATCCGCTCCACTTTTTGCTGATAATAAACCTGATTCTAG TGAAAAACTTAGACAGATGCGCCCGTCTTTATCACGGAAATTCAGTTCATATGTGCTTCCTACCCCAGTTGATGCAAAGA GTTCAATCTCGTCAGGGTCAAATAATCCAAAACCTTCAAAAATGCAGACAAATTCAAATGAGGCTACAACGAATCTGTGG CATTCATCCCCACTGGAACAGAAGAAACATGAAACTATTAGAGATGAGTTTTCCAGTCCTACGGTCAGAAATGCACAGTC AGTACTCAAGGAGAGTAACAGCAATACTGCCACCACGCGATTGCCACCTCCATTGGTAGATGGTCTTTTATCCTCAAATC ATGATTATGTTTCTGCCTACTCTAAAAAGATTAAAAGACATGCCTTTTCTGGCCCATTGACAAGTAATCCTATGCCTACC AGACCTGTCTCAGTAGACAGTGTTCAGATGTTCTCTGGACCTCTTTTGCCAACTCCAATCCCCCAGCCTCCATCGTCATC TCCAAAAGTATCTCCCAGTGCCTCTCCTACTATCGTGTCTTCACCTAAAATAAGTGAGCTTCATGAACTACCAAGGCCTC CAACTAATTTCCCATCCAATTCAAGGCTTTTAGGTCTGGTGGGTTATTCAGGTCCGTTGGTACCCAGAGGGCAAAAGGTT TCCGCTCCAAATAATTTGGTAATTTCAAGTGCAGCATCTCCACTGCCAATTCCGCCTCAAGCCATGGCTCGTAGTTTCTC CATACCTTCTAGTGGTGCTAGAGTTACTGCATTACATAGTTCAAGTGCGCTAGAATCCTCTCATATATCATCTATATCTG AGGATATCGCTTCTCCTCCTTTGACGCCAATAGCATTATCAAATAGTAGGCCATCATCAGATGGCTAA
Protein sequence (LotjaGi1g1v0555300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSSLKKLRGLGLHNHNHNHKHHDSKTILPLGQLEELAQATRDMQDIRDCYDTLLSAAAATASSAYEFAESLRDMGSCLL EKTALNDHEEETGKVLLMLGKIQFKLQKLIDKYRSHIIQTITIPSESLLNELRIVEEMKRQCDEKRDVYEYMATRFRERG RSKGGKTETFSLQQLQTARDEYDEEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLCFFKKAVKSLETVEPHVKSVTEQQ HIDYHFNGLEEEDGDEGDEGYEDDDGYDENDDGELSFDYGQIEQEQDVSTSRNSMELDQVELTLPRGSTAEAAKENLDKL QRNLFSFRVRTGSQSAPLFADNKPDSSEKLRQMRPSLSRKFSSYVLPTPVDAKSSISSGSNNPKPSKMQTNSNEATTNLW HSSPLEQKKHETIRDEFSSPTVRNAQSVLKESNSNTATTRLPPPLVDGLLSSNHDYVSAYSKKIKRHAFSGPLTSNPMPT RPVSVDSVQMFSGPLLPTPIPQPPSSSPKVSPSASPTIVSSPKISELHELPRPPTNFPSNSRLLGLVGYSGPLVPRGQKV SAPNNLVISSAASPLPIPPQAMARSFSIPSSGARVTALHSSSALESSHISSISEDIASPPLTPIALSNSRPSSDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 633 | 633 | 1.9E-295 | ||
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 633 | 633 | 1.9E-295 | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| Gene3D | 33 | 250 | 218 | 4.3E-24 | ||
| SUPERFAMILY | 35 | 235 | 201 | 4.19E-24 | ||
| CDD | 66 | 232 | 167 | 7.68271E-24 | – | |
| MobiDBLite | 240 | 275 | 36 | - | – | |
| MobiDBLite | 249 | 275 | 27 | - | – | |
| Coils | 310 | 330 | 21 | - | – | |
| MobiDBLite | 335 | 420 | 86 | - | – | |
| MobiDBLite | 356 | 403 | 48 | - | – | |
| MobiDBLite | 495 | 536 | 42 | - | – | |
| MobiDBLite | 496 | 510 | 15 | - | – | |
| MobiDBLite | 609 | 635 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0555300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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