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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027267
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.401s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0201789.2
n.a. ADP-ribosylation factor GTPase-activating protein [Medicago truncatula] gi|357520601|ref|XP_003630589.1| chr0 99843316 99847748 +
2 domain predictions
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Lj1g3v3137870.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max] gi|356523716|ref|XP_003530481.1| chr1 35745154 35754140 +
2 domain predictions
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Lj1g3v3329900.1
n.a. Hydroxyproline-rich glycoprotein family protein [Theobroma cacao] gi|508710989|gb|EOY02886.1| chr1 37858997 37864149 +
2 domain predictions
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Lj1g3v3370940.1
n.a. PREDICTED: intersectin-1-like isoform X1 [Cicer arietinum] gi|502130808|ref|XP_004500776.1| chr1 38664558 38668918 +
2 domain predictions
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Lj1g3v3892320.2
n.a. Hydroxyproline-rich glycoprotein family protein [Theobroma cacao] gi|508710989|gb|EOY02886.1| chr1 44840738 44843952 +
2 domain predictions
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Lj2g3v1550040.1
n.a. Rho guanine nucleotide exchange factor [Medicago truncatula] gi|357484541|ref|XP_003612558.1| chr2 24516644 24520015 +
2 domain predictions
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Lj2g3v2843030.2
n.a. Sorting nexin-1 [Medicago truncatula] gi|357492829|ref|XP_003616703.1| chr2 36975494 36979236 +
2 domain predictions
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Lj3g3v3386570.1
n.a. PREDICTED: intersectin-1-like isoform X3 [Cicer arietinum] gi|502149376|ref|XP_004507503.1| chr3 41768109 41774518 -
2 domain predictions
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Lj3g3v3500220.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD2-like [Glycine max] gi|356544659|ref|XP_003540765.1| chr3 42585629 42595505 -
2 domain predictions
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Lj4g3v2628840.1
n.a. PREDICTED: intersectin-2-like [Cicer arietinum] gi|502140518|ref|XP_004504244.1| chr4 35832649 35838069 -
2 domain predictions
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LotjaGi1g1v0073300.1
n.a. sorting nexin; TAIR: AT5G58440.1 sorting nexin 2A; Swiss-Prot: sp|Q8L5Z7|SNX2A_ARATH Sorting nexin 2A; TrEMBL-Plants: tr|G7K781|G7K781_MEDTR Sorting nexin 2B; Found in the gene: LotjaGi1g1v0073300 LjG1.1_chr1 10260029 10268994 -
2 domain predictions
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LotjaGi1g1v0114300.1
n.a. sorting nexin; TAIR: AT5G07120.1 sorting nexin 2B; Swiss-Prot: sp|B9DFS6|SNX2B_ARATH Sorting nexin 2B; TrEMBL-Plants: tr|G7JZQ0|G7JZQ0_MEDTR Sorting nexin 2B; Found in the gene: LotjaGi1g1v0114300 LjG1.1_chr1 17982026 17990089 -
3 domain predictions
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LotjaGi1g1v0114300.2
n.a. sorting nexin; TAIR: AT5G07120.1 sorting nexin 2B; Swiss-Prot: sp|B9DFS6|SNX2B_ARATH Sorting nexin 2B; TrEMBL-Plants: tr|A0A0L9UWY0|A0A0L9UWY0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0114300 LjG1.1_chr1 17982429 17990064 -
3 domain predictions
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LotjaGi1g1v0333600.1
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT5G61980.1 ARF-GAP domain 1; Swiss-Prot: sp|Q9FIT8|AGD1_ARATH ADP-ribosylation factor GTPase-activating protein AGD1; TrEMBL-Plants: tr|I1JXQ4|I1JXQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333600 LjG1.1_chr1 79188440 79196953 +
3 domain predictions
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LotjaGi1g1v0528600.1
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT5G13300.1 ARF GTPase-activating protein; Swiss-Prot: sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3; TrEMBL-Plants: tr|A0A151TCR5|A0A151TCR5_CAJCA ADP-ribosylation factor GTPase-activating protein AGD3; Found in the gene: LotjaGi1g1v0528600 LjG1.1_chr1 105531447 105542646 +
3 domain predictions
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LotjaGi1g1v0528600.2
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT5G13300.1 ARF GTPase-activating protein; Swiss-Prot: sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3; TrEMBL-Plants: tr|A0A151TCR5|A0A151TCR5_CAJCA ADP-ribosylation factor GTPase-activating protein AGD3; Found in the gene: LotjaGi1g1v0528600 LjG1.1_chr1 105533038 105540681 +
3 domain predictions
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LotjaGi1g1v0555300.1
n.a. Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|K7MVM2|K7MVM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0555300 LjG1.1_chr1 108776226 108781646 +
3 domain predictions
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LotjaGi1g1v0555300.2
n.a. Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|K7MVM2|K7MVM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0555300 LjG1.1_chr1 108776553 108780332 +
3 domain predictions
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LotjaGi1g1v0563900.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|G7J7R7|G7J7R7_MEDTR Clathrin-binding protein; Found in the gene: LotjaGi1g1v0563900 LjG1.1_chr1 109692434 109698304 +
3 domain predictions
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LotjaGi1g1v0563900.2
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|G7J7R7|G7J7R7_MEDTR Clathrin-binding protein; Found in the gene: LotjaGi1g1v0563900 LjG1.1_chr1 109694462 109697635 +
3 domain predictions
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LotjaGi1g1v0629500.1
n.a. Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|V7CU24|V7CU24_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0629500 LjG1.1_chr1 118077009 118084246 +
3 domain predictions
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LotjaGi1g1v0629500.2
n.a. Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|A0A151SM30|A0A151SM30_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi1g1v0629500 LjG1.1_chr1 118077060 118084192 +
3 domain predictions
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LotjaGi1g1v0629500.3
n.a. Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|A0A0L9U6Q1|A0A0L9U6Q1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0629500 LjG1.1_chr1 118077060 118084192 +
3 domain predictions
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LotjaGi2g1v0345400.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|I1J846|I1J846_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0345400 LjG1.1_chr2 82242999 82247193 +
3 domain predictions
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LotjaGi3g1v0513900.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 LjG1.1_chr3 93113171 93120398 -
3 domain predictions
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LotjaGi3g1v0513900.2
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 LjG1.1_chr3 93113729 93118873 -
3 domain predictions
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LotjaGi3g1v0513900.3
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 LjG1.1_chr3 93113729 93119113 -
3 domain predictions
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LotjaGi3g1v0524900.1
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT1G60860.1 ARF-GAP domain 2; Swiss-Prot: sp|Q9C6C3|AGD2_ARATH ADP-ribosylation factor GTPase-activating protein AGD2; TrEMBL-Plants: tr|K7LSS6|K7LSS6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0524900 LjG1.1_chr3 94168287 94180100 -
3 domain predictions
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LotjaGi4g1v0382800.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G18060.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8L7W0|SH3P3_ARATH SH3 domain-containing protein 3; TrEMBL-Plants: tr|I3SJQ0|I3SJQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0382800 LjG1.1_chr4 76159304 76165020 -
3 domain predictions
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LotjaGi4g1v0382800.2
n.a. SH3 domain-containing protein 1; TAIR: AT4G18060.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8L7W0|SH3P3_ARATH SH3 domain-containing protein 3; TrEMBL-Plants: tr|I3SJQ0|I3SJQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0382800 LjG1.1_chr4 76159722 76164474 -
3 domain predictions
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LotjaGi4g1v0421700.3
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT5G61980.1 ARF-GAP domain 1; Swiss-Prot: sp|Q9FIT8|AGD1_ARATH ADP-ribosylation factor GTPase-activating protein AGD1; TrEMBL-Plants: tr|G7LIT7|G7LIT7_MEDTR ADP-ribosylation factor GTPase-activating protein AGD10; Found in the gene: LotjaGi4g1v0421700 LjG1.1_chr4 79690415 79699454 -
3 domain predictions
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LotjaGi5g1v0099300.1
n.a. Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|C6TEZ3|C6TEZ3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0099300 LjG1.1_chr5 17831561 17840011 -
3 domain predictions
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LotjaGi5g1v0099300.2
n.a. Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|K7K9Q0|K7K9Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0099300 LjG1.1_chr5 17833188 17838781 -
3 domain predictions
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LotjaGi5g1v0099300.3
n.a. Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|C6TEZ3|C6TEZ3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0099300 LjG1.1_chr5 17833188 17839873 -
3 domain predictions
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LotjaGi5g1v0099300.4
n.a. Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|A0A0B2SME9|A0A0B2SME9_GLYSO Sorting nexin 1; Found in the gene: LotjaGi5g1v0099300 LjG1.1_chr5 17833188 17839873 -
3 domain predictions
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