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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0557400 |
| Transcript ID | LotjaGi1g1v0557400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT3G06980.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q8GUG7|RH50_ARATH DEAD-box ATP-dependent RNA helicase 50; TrEMBL-Plants: tr|A0A151SFL8|A0A151SFL8_CAJCA DEAD-box ATP-dependent RNA helicase 50; Found in the gene: LotjaGi1g1v0557400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108961407..108967645) extracted from Lotus japonicus Gifu genome v1.2.
AGATTTGACACCCCAATCATTAGAAATGTCACCCCACTTACGGAAACTCAGTTTCCGAAATATTTCGGAAATAAGGTTTC CGAAGCACTTTTTTACTCAAAAGTGTAGTTTTTTACTCAAAAGTGTGGTGTTAGATGTATTTTGAACTAAAAATCACGAA TTAATTTCGGAATCTAAGATTCCGAAATAATTCGGAACTTGAAAATCCGAAAATTAGGGGTGTGAAATCTAATGGTTGGT GTGTCAAATCCAGCTCTCGTTCCTTCCTTATCTTCTCATTGTAGTTTATCGAGCAGGAGCAGTAGCAGAAGAAGAGAATA GAAGCAATGGTGGTTGGTGTTGGGAGCCAAGGTTTTCGTCCTCCTTCAATTTCGAACCTCAACCACTCTAGACAACTTCA CTCTTTCTATGTCTCCGCCACCAATCGCCAACACAATCCACCCACAACCACCGACGACAACAATCTTAAACAACCTTCTT CCAGTTTCGGAAGACTCAAAGCTCACCAAGTCAAAGCTCTCATCCACCGAACCAAGCCCCAAAGACGCGACAGTCATCTA CCATTCACAGATTCTTCTTCTATTGAAGAACATGAACAAGCTCATCAAACCTCTCATCATTCAGCTGGAACCAAGTACCA AAGACGCAGCAGCACTCGCCAACCATTCACAGATTCTACTGTTGCAACAGAAAGAGAAGAAGCTCATCAAACCTCTCGTC ATTCAGGTGGAGCCAAGTATCAAAGACGCAGTAGCACTCATCAACCATTCACAGATTCCACTGTTGAAAATAGAGAAAGA GAAGAAGCTCATCAAACCTCTCGTCATTCAGGTGGAAGACGACCTTCTTCTTCTTCATCTTCTTCTTCTCATTCGAAATT AGGAAGAGGATGGGGTGATACAATTACTGTTCCTTATTCGCCAATGGATAACAGAAAGCCATCAATGCCAGACAACAACT TTTTCAGTGTCAAATCCTTCAAGGATATAGGCTGCTCTGACAATGTCATTCAATCCCTCCAGAACCAGTCTTTTACTCGC CCTTCCCATGTACAGGTTGGTCTGATTCTTCCTGTTTGGAAGTGCTTACTTGAGTTTATCTGATAGCATAAACTCTTATG TCAGTGTTTGGGAGAGCTTATGCAAACAGCTTACGGCCTACTATAAGTTGTTTTGAGCTTTTTTTCATAAGCTACTCAGG GTAGCTAATGAAAAAGAGCTTATGCTTATATATAGCATATTTTCGATTTATTTCAATTTTTTTTAAATAGCTTATGAATA AGCGCTTAATTAAGCTGTGTTTCCAAACGGGCATGTTAATTTATGGTTTGATTTTATATTTTAACTGAGTTTTATGTTGA ATAATTTGATTATGTCATGTTTAGGCGATGGCATTTGGTCCTGTTATTGCTGGAAAGACTTGTGTCATATCTGATCAAAG CGGTTCTGGAAAGACATTAGCTTATCTTGCACCCATAATTCAGCGTCTTAAACAAGAAGAACTCGAAGGACGTAGTAAAT CCTCTTCACAAGCTCCTAGAGTGGTTATACTGGCACCCACTGCTGAGTTAGCTTCTCAGGTTAAATGCTTTTTATATATA TATATTCTCCATGTAAAACTACAGCATTTTCCTTTTCTTCATGAACAGCAAGTGCTTAACAGAATTATGGTTTAGGTGTA TGTAGGGAAGCTCCAAGTCCAAAATGCTAATCCCATCTTAACTCTGACTCAATTCAGACATTAAAAAGTAACATGTTAGA CATGTGGCTACTTAGTGCATAAAGAATCATGTTAAAAGAATAGCAGAAAGGGATACAAGAAAATAATATTAAAGATCTTT GGTCTTGGATAATTTTTTTGAAGGAATTTCTCATTATTTATGCAGGGACTTAAGTTTTTACTTTTTTTTAGGTGATATTT TTCAAATATGAGATGGGAAACAATCAGAGCATTTCATAGAAATTCTTTTGATGTTTCTGACAAAAATCTTTTGCGCAAAC TTTCTGGATATTTGTGAAAACTGTAGCATGTACTTTTTTAATGTAACAAATAAATCATAGCTATAATAAGTATGCAATAT TTCAGCTCAGGTCTTGGAAATAAAGCTGAAATTTTTATACACATTAAATATATTTGGTTTATATTCTTTTGCTTGATGCT TCTTTAACTATTTGATTGTAAATTTAAACTGATTTAGGTATTTTCACATGGGGGATTCATCAAATACTGAGGTTGACTAA GGTAGCGAGAAACAATTTGAGATGAGGAAGTTAAAAGTATCGTTGTATCAATTGTGGGAGGCTAATTGGCCTCTAATAGG TCCTATTGATGAAGTTAGATGTATAAAACCATTTAATAGTCTTTACACAGGAACTTAAGCTTTTACAGAAGTTTGTCCTT GACTTAGTAACAAAGTTTCTATAACTAAGTGGTCAAGAGTTCAATCATTGCCAATTTGCCATAATCATTCTTCAAAACGG AGTTGTGCCACTGCACAAGATAGAGTGGGTTTGTGCATTATCTATGCATCAAGCCTAAAGTGCTCTTACATGAGGTGGGA AACCATTTTAGAATCTTCACCTAAACAGGTTAAAGTTTTTGGAGAGTTGGTCCTTTACAACTGTGAACTATTACTAGGCC ATCCAAAACAAAGGAAGATCATTCTTGTACTTTGGGATTTCAGCAAGATTGTATTCCTTTCATTTTTGAATGTTTTAAAA TAGTAGAATTATTGTAAAATGTGCTACCTTACTGTTTGAATGTTTGTCATTATAGTATTAGTATTTGAAAACGGCAGACG TAAAATTATAACAATCTTTGACTTAAGAATGGGGGGGGGGGGTCAACCATTTGTTTGCACAAGCACAAGTCACAAGGTTA GAAAAAGATGTGCAGTTTGGAGAGTGGTATATATAACTGTTGTTTGTCAATCTGTTGCTTGCAGGTCTTAGATAATTGTC GATCGATGTCAAAGTCTGGGGTTCCATTCAAATCTATGGTTGTCACTGGTGGCTTTCGACAAAGAACACAACTGGAAAGT TTACAGCAGGGTGTTGATGTCTTAATAGCTACACCTGGTCGATTTTTGTTCCTGATAAAGGAAGGCTTCTTGCAGTTGAC AAATCTAAGATGGTAAAACTTGGTCTCTTTTTAAATTGAATAACTTGGTAGTAACCTTACTAGTTTCTACATTTATTTTC TGTTGCACTAGTTTTATCATTCAATGAGCAGTTACACAACCATTAGAGCATCTTTAACCATGATACTCACTAAAGTATTT ACATTCTACTTTTTACAACTTCAAATAATACCACATCATCTACATCTTTTTATTAATTTTTACTCCAACCCAACAACTTT TAAAAGTTTATATAAAAAATTATTTTATTAATTGCAAGTTTTATTTAAACCTTTTACATTAAGCAATAATAAATGCAAAC ACACTTTTCATGACTAAATTGAGTATCTACACTCACATACTCTCATTAGCCATGTTGGAATTAAAAATTTGCTCCAATGG TAATAGATATTGGTGAGAGTATGTATTTGACATTACATACTCCCATTGGAGATGCTCTTAGCATCTTATTATTTCATTGA TGGCTTGACGTAATGCATGACAGTTAAATACAGGTCAATATAACTATTGCTTAATTGGTCGTTGGAATTGCATAGTTTAG TAGCTGGAGTCAGCATATCTTTATAATCTTTGACTCACATATTATTAGAAGGACATAATATTAAAAGGTCATTTACTTAT TATGGTGATCAGGATTACACCTCTGCAAAATTGATTTGTTTGATGATTGATCTTCTGTCATTGTGGTAGAAGTTTCTAAA ATGTAGGAGTTGTTGAAACTGTGTTGTGATCTTATCAGGATTACATGTTAGCCACTAAGGATATCTGACTATTAATTTCT ATTTTCAAATCATGAAGTTGTGCTGTTCTTCCATTCCTTTTCCTTCTCCATTGTGGATATATATCCATTGGATTTGTTTA TCCATCCATGACAGTGGTAGGATTTGTCCTAACGACATTTATTTGTTGCAGTGCTGTGTTGGATGAGGTAGATATACTCT TGGGTGATGAGGACTTTGAAGGGGCTCTTCAATGCTTGATTAATTCTTCACTGGTTGACACACAATACTTATTTGTGACT GCTACTTTACCGAAAAATGTCTACAGCAGACTGGTTGAAGTTTTTCCTGATTGCGAAATGATCATGGGACCTGGTATGCA CCGTATAAGTTCTCGCCTTGAAGAGGTTAGGTTTCAGTTGCAAATTCCTTTTCCTTCTACTTATTTTTTAGACTGAAGAT AGCATGATTGCAGATTAGAAAGCATACTCCCTGAATTTGCTGTGTGTGAGTAGACAAATTTCCTGTATTGGCTGATTAAA TATGAGAAGCATAACTCCTTTTGTGTCCTACATGGTATTCAACTTGCTTTGTAATTTATTCTCAAGCTATACTTTGTTCT GTACCATTGCATATAGAACTACAGCTTGTAACAACTAAAAAAGTGGTATGACGCACCTGTATTATATTCTTAAGAGTGCT GGGATATTTTGGTGTGTAAAGGCCATGCTGGATAACTGTATTATGCACCATTGTTGAGTCATCAGTTTCGTGCATGTAAG TATGATGATTTTTTTTCTCATTTGTTCAGGTTCTAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTCCTGATACA GCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACAATTGTGTTCTGCAACAG GGTATTTTGGTTTCTTAATTTTGGGAGTCATTTTGAATTATCATCATTGCGCTATCTGTTCCTTTTATTTTGTTATAATT CTCCAAAAATAAATTGCAGATTGAAACATGTAGAAAAGTTGAAAATGCGTTAAACCGTATTGACAAAAAAGGAACTCGCA TCCAAGTTCTACCTTTCCATGCCGCCATGACACAAGAATCACGGCTTGCTAGTAGGGAAGGGTTTACACGTTCTCCATCA AAAGAAGTCTCCCAGTTTATGGTTTGCACTGACAGGTATTCATTTATCTTTGAACTCGTTAGTTTTGGCTGTTCAAAATC GTGTCTTTCCCTTTAGTCTTTGATAACTGTGTCTATGTTTAAAAACTGTGAAAGGATATTCGCCTGTATTTTGAGAAAAA AGAGTACAAGAAATTTAGTAGTTCCGCTGGCTTGAAAGTCCTTTGAAAAGAGTCTCTCTAACTTGTTTTCAAACACACGC TCATTGTGGTTACTTGTCACAGAGCATCACGGGGAATTGACTTCGCGGAAGTGAATCATGTCATACTTTTTGACTTCCCA CGTGATCCGAGTGAATATGTGCGGCGTGTTGGAAGAACAGCCAGAGGTGCTAGGGGACAGGGCAAGGCATTTATCTTTGT GGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCGGAAGGGTCACCCCCTACATGATGTACCTTCGG CTTTTGAGCTGATGAGATAGAAAGTGAAGTTGTGTTTGTTAAGTGCTTGGAAAGGGTGCTCTCAACTGAGGCTGGCCCTC GTTGAAACATGGAAATGCAATTGTGTTCGAAATGGCAAAGCAAACAAACAATTAATGTAGCTAGCTTGTTAGGAGAAGGG TATGCAATTGGCTCTAGATGAGGGAGATCTGTGAAGGCAATGATTGAATACTTTGTGTCCACGCAGGGTGAGAATCCCAA CTTCTTCTATGCAATAGACCTGGATCTTAATAGACATTTGACAAGTGTATTTTGGGTTGACATAAAGGGCAGACTTGATT ATGAAACTTCCATGATGTTGTTTTGATTCACACTTTTTACTTAAAAAACAAATATAAAATTCCTTTTGTTCCCATTGTGG GAGTCAACCATCACTTCCAGTACATATTACTTGGATGTGCACTTTTAAATGGTTAATGCAAACATGGCTCAAAGCAATGG GTAGCTTACCCCCAAAGGTGATTATTACCGACCAAGATAAATTGCAATTGGTTTGGATAAAAATATTCTTATACTTTTTC ATTAATGTAATTAAACACAAAATTTCTATTATTCTACCCAAAAGATTTAGCGTTGCTCCGATACTCATTTAAAATGTGAG ACTTTGGAACTCTTTGGTCCATTATTTAAAATGTAAATGATTAGATTGCAAATTATAAAAGTTTGTTGTGAAAGAAAAC
CDS sequence (LotjaGi1g1v0557400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTTGGTGTTGGGAGCCAAGGTTTTCGTCCTCCTTCAATTTCGAACCTCAACCACTCTAGACAACTTCACTCTTT CTATGTCTCCGCCACCAATCGCCAACACAATCCACCCACAACCACCGACGACAACAATCTTAAACAACCTTCTTCCAGTT TCGGAAGACTCAAAGCTCACCAAGTCAAAGCTCTCATCCACCGAACCAAGCCCCAAAGACGCGACAGTCATCTACCATTC ACAGATTCTTCTTCTATTGAAGAACATGAACAAGCTCATCAAACCTCTCATCATTCAGCTGGAACCAAGTACCAAAGACG CAGCAGCACTCGCCAACCATTCACAGATTCTACTGTTGCAACAGAAAGAGAAGAAGCTCATCAAACCTCTCGTCATTCAG GTGGAGCCAAGTATCAAAGACGCAGTAGCACTCATCAACCATTCACAGATTCCACTGTTGAAAATAGAGAAAGAGAAGAA GCTCATCAAACCTCTCGTCATTCAGGTGGAAGACGACCTTCTTCTTCTTCATCTTCTTCTTCTCATTCGAAATTAGGAAG AGGATGGGGTGATACAATTACTGTTCCTTATTCGCCAATGGATAACAGAAAGCCATCAATGCCAGACAACAACTTTTTCA GTGTCAAATCCTTCAAGGATATAGGCTGCTCTGACAATGTCATTCAATCCCTCCAGAACCAGTCTTTTACTCGCCCTTCC CATGTACAGGCGATGGCATTTGGTCCTGTTATTGCTGGAAAGACTTGTGTCATATCTGATCAAAGCGGTTCTGGAAAGAC ATTAGCTTATCTTGCACCCATAATTCAGCGTCTTAAACAAGAAGAACTCGAAGGACGTAGTAAATCCTCTTCACAAGCTC CTAGAGTGGTTATACTGGCACCCACTGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCGATGTCAAAGTCTGGG GTTCCATTCAAATCTATGGTTGTCACTGGTGGCTTTCGACAAAGAACACAACTGGAAAGTTTACAGCAGGGTGTTGATGT CTTAATAGCTACACCTGGTCGATTTTTGTTCCTGATAAAGGAAGGCTTCTTGCAGTTGACAAATCTAAGATGTGCTGTGT TGGATGAGGTAGATATACTCTTGGGTGATGAGGACTTTGAAGGGGCTCTTCAATGCTTGATTAATTCTTCACTGGTTGAC ACACAATACTTATTTGTGACTGCTACTTTACCGAAAAATGTCTACAGCAGACTGGTTGAAGTTTTTCCTGATTGCGAAAT GATCATGGGACCTGGTATGCACCGTATAAGTTCTCGCCTTGAAGAGGTTCTAGTAGATTGCAGTGGAGAAGATGGGCAAG AAAAAACTCCTGATACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACA ATTGTGTTCTGCAACAGGATTGAAACATGTAGAAAAGTTGAAAATGCGTTAAACCGTATTGACAAAAAAGGAACTCGCAT CCAAGTTCTACCTTTCCATGCCGCCATGACACAAGAATCACGGCTTGCTAGTAGGGAAGGGTTTACACGTTCTCCATCAA AAGAAGTCTCCCAGTTTATGGTTTGCACTGACAGAGCATCACGGGGAATTGACTTCGCGGAAGTGAATCATGTCATACTT TTTGACTTCCCACGTGATCCGAGTGAATATGTGCGGCGTGTTGGAAGAACAGCCAGAGGTGCTAGGGGACAGGGCAAGGC ATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCGGAAGGGTCACCCCCTACATG ATGTACCTTCGGCTTTTGAGCTGATGAGATAG
Protein sequence (LotjaGi1g1v0557400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVGVGSQGFRPPSISNLNHSRQLHSFYVSATNRQHNPPTTTDDNNLKQPSSSFGRLKAHQVKALIHRTKPQRRDSHLPF TDSSSIEEHEQAHQTSHHSAGTKYQRRSSTRQPFTDSTVATEREEAHQTSRHSGGAKYQRRSSTHQPFTDSTVENREREE AHQTSRHSGGRRPSSSSSSSSHSKLGRGWGDTITVPYSPMDNRKPSMPDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPS HVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSG VPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSSLVD TQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRT IVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVIL FDFPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAFELMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 33 | 52 | 20 | - | – | |
| MobiDBLite | 66 | 204 | 139 | - | – | |
| MobiDBLite | 68 | 96 | 29 | - | – | |
| MobiDBLite | 97 | 117 | 21 | - | – | |
| MobiDBLite | 132 | 150 | 19 | - | – | |
| MobiDBLite | 151 | 167 | 17 | - | – | |
| PANTHER | 151 | 589 | 439 | 1.5E-107 | – | |
| PANTHER | 151 | 589 | 439 | 1.5E-107 | – | |
| MobiDBLite | 168 | 187 | 20 | - | – | |
| Gene3D | 200 | 428 | 229 | 2.0E-55 | – | |
| ProSiteProfiles | 216 | 244 | 29 | 9.961 | ||
| CDD | 227 | 414 | 188 | 1.54947E-61 | – | |
| SMART | 235 | 443 | 209 | 2.4E-33 | ||
| Pfam | 241 | 414 | 174 | 2.9E-33 | ||
| ProSiteProfiles | 247 | 428 | 182 | 23.945 | ||
| SUPERFAMILY | 250 | 592 | 343 | 4.53E-51 | ||
| CDD | 440 | 591 | 152 | 3.84514E-35 | – | |
| Gene3D | 456 | 619 | 164 | 2.5E-34 | – | |
| ProSiteProfiles | 463 | 623 | 161 | 18.605 | ||
| Pfam | 464 | 580 | 117 | 7.3E-24 | ||
| SMART | 491 | 581 | 91 | 3.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0557400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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