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LotjaGi1g1v0557700.3

Overview

Field Value
Gene ID LotjaGi1g1v0557700
Transcript ID LotjaGi1g1v0557700.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Glutamate-1-semialdehyde 2,1-aminomutase; TAIR: AT3G48730.1 glutamate-1-semialdehyde 2,1-aminomutase 2; Swiss-Prot: sp|P45621|GSA_SOYBN Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic; TrEMBL-Plants: tr|G4W9I5|G4W9I5_MEDTR Glutamate 1-semialdehyde aminotransferase; Found in the gene: LotjaGi1g1v0557700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:109001992..109003826) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCCGGAGGTGTCAACTCACCTGTTCGTGCCTTCAAATCTGTGGGTGGACAGCCAATTCTTATTGACTCAGTCAAAGG ATGTCGCATGTGGGACATTGATGGCAATGAGTACATTGACTACGTTGGTTCTTGGGGGCCTGCAATTATTGGTCACGCTG ATGATCAGGTTCCATGCTCATATTTTTAGCTTTTACATATGAAAAGGGGTTGCTGAGTGTCACTGAGATGAGATAGTTTA AACCCTTTTTCAGACATTACTTTGTTGCAATAGAAAGGGTTGCTTATATTCTTATTTCAATGGAAAATGAGTAGTAGACA GTAGACAACATGATTAAGGAGCCACACCAAAATGGTAAGGGAGAGAAAGGAATAAAAGAGGTGTAAGTGATAGATATGGG GTGCGTTTCGGTAGACAACTTATTTAAGTGTAGGTGCTTATCACTTTAACGCTTATTCTTAAGCTAATTTGAGAATCTTA CTGAAATGAGCTGAAAATAGGTTATATGTAAGCATAAACTCTTATTCATAAGCTAATTTGAACAACTTGTGAAAATAAGC TTGAAATAGCTTATAGGTAGACATAAGCTCCCTCAAACAGTTTGTACATGTACTTATGCTATAAGATAAGCTCAAATGGG TTTTCTCAAACGGGGTCATGATATATGATGTGATAGGAAGAGAAAGATAGAAAGAAAAATGTGATGTATATGGAGTGTCA GGTTTGGCTGTTTTAATAATCAGGAATATGTTTCCCTCAAATTACAGGTGCTTGCAGCTCTCGGTGAAACAATGAAGAAA GGAACCAGCTTTGGTGCACCTTGTCTGCTGGAAAACACATTAGCAGAGATGGTTATCTCTGCAGTTCCGAGCATTGAAAT GGTACGATTTGTTAATTCTGGCACTGAAGCTTGCATGGGTGCGCTCCGACTTGCTCGTGCTTTCACTGGAAATGAGAAGA TCATCAAGTTTGAGGGCTGTTATCATGGCCATGCTGATCCTTTTCTAGTCAAGGCAGGTAGTGGGGTTGCTACCTTAGGA CTTCCCGATTCCCCTGGCGTTCCTAAAGCTGCCACTTTTGAGACCCTCACAGCCCCCTACAATGACTTCTCAGCTGTTGA GGAGATCTTTAAGGCAAACAAAGGAGAGATAGCAGCACTTTTCCTCGAACCTGTTGTTGGAAACTCTGGTTTCATTCCTC CTAAACCTGAATTTCTCAGTTTCTTACGCAAAATCACCAAAGAGAACAACACCCTGCTAGTCTTTGATGAAGTTATGACT GGATTTCGTTTGTCATATGGAGGTGCTCAAGAATATTTTGGCATAACTCCTGATTTAACAACTCTAGGAAAGATCATCGG TGGGGGTCTGCCAGTAGGCGCTTACGGAGGGAGGAGGGAAATTATGCAGATGGTGGCACCAGCAGGACCAATGTACCAGG CTGGGACCTTGAGTGGTAACCCTTTGGCCATGACTGCTGGCATACAAACTCTGAAGCGTATTAAGGAGCCAGGGACTTAC CAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGCATCGTTGAAGCTGGTAAGAAGGCAGGCCATGCAATATGTGG TGGGCATATAGGTGGTATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGCACAATTTCACAGATGCCAAAAAAAGTGATG CGGACAAGTTTGTTAGGTTCTTCTGGGGAATGTTAGAGGAAGGTGTGTATTTGGCACCTTCACAATTTGAGGCTGGCTTC ACCAGCTTGGCACATACTTCTGATGACATCAAAAAGACCATAGCTGCTGCCGAGAAGGTTTTCAGGCAGATTTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0557700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCCGGAGGTGTCAACTCACCTGTTCGTGCCTTCAAATCTGTGGGTGGACAGCCAATTCTTATTGACTCAGTCAAAGG ATGTCGCATGTGGGACATTGATGGCAATGAGTACATTGACTACGTTGGTTCTTGGGGGCCTGCAATTATTGGTCACGCTG ATGATCAGGTGCTTGCAGCTCTCGGTGAAACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTGCTGGAAAACACA TTAGCAGAGATGGTTATCTCTGCAGTTCCGAGCATTGAAATGGTACGATTTGTTAATTCTGGCACTGAAGCTTGCATGGG TGCGCTCCGACTTGCTCGTGCTTTCACTGGAAATGAGAAGATCATCAAGTTTGAGGGCTGTTATCATGGCCATGCTGATC CTTTTCTAGTCAAGGCAGGTAGTGGGGTTGCTACCTTAGGACTTCCCGATTCCCCTGGCGTTCCTAAAGCTGCCACTTTT GAGACCCTCACAGCCCCCTACAATGACTTCTCAGCTGTTGAGGAGATCTTTAAGGCAAACAAAGGAGAGATAGCAGCACT TTTCCTCGAACCTGTTGTTGGAAACTCTGGTTTCATTCCTCCTAAACCTGAATTTCTCAGTTTCTTACGCAAAATCACCA AAGAGAACAACACCCTGCTAGTCTTTGATGAAGTTATGACTGGATTTCGTTTGTCATATGGAGGTGCTCAAGAATATTTT GGCATAACTCCTGATTTAACAACTCTAGGAAAGATCATCGGTGGGGGTCTGCCAGTAGGCGCTTACGGAGGGAGGAGGGA AATTATGCAGATGGTGGCACCAGCAGGACCAATGTACCAGGCTGGGACCTTGAGTGGTAACCCTTTGGCCATGACTGCTG GCATACAAACTCTGAAGCGTATTAAGGAGCCAGGGACTTACCAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGC ATCGTTGAAGCTGGTAAGAAGGCAGGCCATGCAATATGTGGTGGGCATATAGGTGGTATGTTTGGGTTTTTCTTCACAGA AGGACCTGTGCACAATTTCACAGATGCCAAAAAAAGTGATGCGGACAAGTTTGTTAGGTTCTTCTGGGGAATGTTAGAGG AAGGTGTGTATTTGGCACCTTCACAATTTGAGGCTGGCTTCACCAGCTTGGCACATACTTCTGATGACATCAAAAAGACC ATAGCTGCTGCCGAGAAGGTTTTCAGGCAGATTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0557700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPGGVNSPVRAFKSVGGQPILIDSVKGCRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENT LAEMVISAVPSIEMVRFVNSGTEACMGALRLARAFTGNEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATF ETLTAPYNDFSAVEEIFKANKGEIAALFLEPVVGNSGFIPPKPEFLSFLRKITKENNTLLVFDEVMTGFRLSYGGAQEYF GITPDLTTLGKIIGGGLPVGAYGGRREIMQMVAPAGPMYQAGTLSGNPLAMTAGIQTLKRIKEPGTYQYLDKITGELVQG IVEAGKKAGHAICGGHIGGMFGFFFTEGPVHNFTDAKKSDADKFVRFFWGMLEEGVYLAPSQFEAGFTSLAHTSDDIKKT IAAAEKVFRQI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43713:SF5
1 411 411 3.8E-263 –
Gene3D
G3DSA:3.90.1150.10
1 403 403 2.5E-175
IPR015422
SUPERFAMILY
SSF53383
1 410 410 3.98E-124
IPR015424
TIGRFAM
TIGR00713
1 410 410 2.7E-180
IPR004639
Hamap
MF_00375
1 411 411 98.235
IPR004639
PANTHER
PTHR43713
1 411 411 3.8E-263 –
CDD
cd00610
14 408 395 1.48018E-130
IPR005814
Pfam
PF00202
19 379 361 7.1E-70
IPR005814
Gene3D
G3DSA:3.40.640.10
55 303 249 2.5E-175
IPR015421
ProSitePatterns
PS00600
220 256 37 -
IPR005814

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0033014
Biological process Tetrapyrrole biosynthetic process The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
Subterm of
GO:0042286
Molecular function Glutamate-1-semialdehyde 2,1-aminomutase activity Catalysis of the reaction: (S)-4-amino-5-oxopentanoate = 5-aminolevulinate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0557700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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