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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0558200 |
| Transcript ID | LotjaGi1g1v0558200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G35100.1 plasma membrane intrinsic protein 3; Swiss-Prot: sp|P93004|PIP27_ARATH Aquaporin PIP2-7; TrEMBL-Plants: tr|A0A0L9UIG5|A0A0L9UIG5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0558200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109046852..109047811) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGAAGGAAGTGATGAGTGAAGAAGCTCAGCAGCATCACGGGAAAGACTATGTGGACCCACCACCAGCACCTCTCAT CGACCTTGCTGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATTGCCGAGTTCATCGCCACCCTCCTCTTCCTCTACG TCACCGTCGCCACCGTCATCGGCCACAAGAAGCAAACCGGACCATGCGACGGTGTCGGCCTCCTCGGCATTGCCTGGTCC TTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGG CCTCTTCCTCGCTCGCAAGGTGTCTCTCATTCGAGCTGTCTTGTACATGGTAGCTCAGTGCTTGGGTGCTATCTGCGGTG TTGGGTTGGTGAAGGCGTTCATGAAGCACCCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTGGCTCATGGCTACAGC AAGGGCTCTGCTCTCGGTGCTGAGATTATCGGCACGTTTGTGCTTGTGTACACTGTGTTCTCTGCGACTGACCCGAAGAG AAGCGCGCGTGACTCTCACGTGCCAGTACTGGCACCGTTGCCTATTGGTTTCGCTGTTTTCATGGTTCACCTGGCCACCA TACCCATCACTGGTACCGGCATTAACCCTGCAAGGAGCTTCGGTGCTGCTGTTATCTTCAACAATGGCAAAGTTTGGGAT GACCAGGTACATATGTTATGTGTCAACTTTTCATTTCCTAGCTAATTGCTAATTATTGACTAATGGAGTGAGTTTATGTG TAATTAATGTTAATGATGTTAATGTTTGTTTTGGTTGTAGTGGATATTCTGGGTTGGGCCATTCGTAGGAGCATTGGCAG CAGCAGCATATCACCAGTACATACTGAGAGCAGCGGCTATCAAGGCACTGGGCTCGTTCCGTAGCAACCCCACCAACTGA
CDS sequence (LotjaGi1g1v0558200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAAGGAAGTGATGAGTGAAGAAGCTCAGCAGCATCACGGGAAAGACTATGTGGACCCACCACCAGCACCTCTCAT CGACCTTGCTGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATTGCCGAGTTCATCGCCACCCTCCTCTTCCTCTACG TCACCGTCGCCACCGTCATCGGCCACAAGAAGCAAACCGGACCATGCGACGGTGTCGGCCTCCTCGGCATTGCCTGGTCC TTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGG CCTCTTCCTCGCTCGCAAGGTGTCTCTCATTCGAGCTGTCTTGTACATGGTAGCTCAGTGCTTGGGTGCTATCTGCGGTG TTGGGTTGGTGAAGGCGTTCATGAAGCACCCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTGGCTCATGGCTACAGC AAGGGCTCTGCTCTCGGTGCTGAGATTATCGGCACGTTTGTGCTTGTGTACACTGTGTTCTCTGCGACTGACCCGAAGAG AAGCGCGCGTGACTCTCACGTGCCAGTACTGGCACCGTTGCCTATTGGTTTCGCTGTTTTCATGGTTCACCTGGCCACCA TACCCATCACTGGTACCGGCATTAACCCTGCAAGGAGCTTCGGTGCTGCTGTTATCTTCAACAATGGCAAAGTTTGGGAT GACCAGTGGATATTCTGGGTTGGGCCATTCGTAGGAGCATTGGCAGCAGCAGCATATCACCAGTACATACTGAGAGCAGC GGCTATCAAGGCACTGGGCTCGTTCCGTAGCAACCCCACCAACTGA
Protein sequence (LotjaGi1g1v0558200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKEVMSEEAQQHHGKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWS FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFMKHPYNSLGGGANSVAHGYS KGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNGKVWD DQWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 4.0E-170 | ||
| PANTHER | 1 | 281 | 281 | 4.0E-170 | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| Gene3D | 24 | 281 | 258 | 2.1E-106 | ||
| SUPERFAMILY | 31 | 265 | 235 | 8.37E-65 | ||
| Pfam | 32 | 259 | 228 | 1.8E-80 | ||
| Phobius | 37 | 60 | 24 | - | – | |
| PRINTS | 39 | 58 | 20 | 1.3E-71 | ||
| CDD | 39 | 263 | 225 | 2.85954E-77 | ||
| TMHMM | 40 | 62 | 23 | - | – | |
| TIGRFAM | 43 | 259 | 217 | 7.3E-63 | ||
| Phobius | 61 | 71 | 11 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 72 | 95 | 24 | - | – | |
| PRINTS | 81 | 105 | 25 | 1.3E-71 | ||
| Phobius | 96 | 114 | 19 | - | – | |
| ProSitePatterns | 99 | 107 | 9 | - | ||
| Phobius | 115 | 137 | 23 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| PRINTS | 118 | 137 | 20 | 1.3E-71 | ||
| Phobius | 138 | 195 | 58 | - | – | |
| TMHMM | 164 | 181 | 18 | - | – | |
| PRINTS | 167 | 185 | 19 | 1.3E-71 | ||
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 196 | 216 | 21 | - | – | |
| PRINTS | 203 | 225 | 23 | 1.3E-71 | ||
| Phobius | 217 | 242 | 26 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| PRINTS | 243 | 263 | 21 | 1.3E-71 | ||
| Phobius | 243 | 264 | 22 | - | – | |
| Phobius | 265 | 281 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0558200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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