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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0559400 |
| Transcript ID | LotjaGi1g1v0559400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin, putative; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|A0A1J7IIF6|A0A1J7IIF6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0559400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109196932..109200196) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAGTGTATATGACTGATGAGAAAGAGTTAATTATGGAGCCTTCTATAAGATGGGCCGGAAATCCTAATGTTATTAT TGCAGCTAAGGCATTTGGTTTGAAAGCAACCATTCAGGTAATTTGCTATTTGTGTGTGTGAGTGTGTGTGTGAGAGAGAG AGAGAGAGACATGGAGGAGCAAGATGGGTTGAAGGATAGATGTTTCTTCATACTAAGAGTTTCATGTCTTTTCAGGTGGT GGATTTGCAAGTTTTTCTTGCACCTCGTATTACTTTGAAGCCTTTGGTTCCAGCTTTTCCATGCTTTGCCAACATCTATG TTTCTCTCATGGAAAAGGTTTGTCATGCTAGGAAATTAGGATTATAACTTTCCCTACCTATTGACAACTTGAATACATGT AAAGCATTTACATACACAAGACACTAGCAGTCGAGCATTTTGCAGCTCTGTGATGGCTGAGGCCCCCCGTATCCGTGTCT AAGTTCAAATTCAAACACCACAAGTAGTAGCTGCTAGTTGGTGCTAATGTTAAAAGTAGCTTGCATAGTCGATGACAAGA ATAATACATTTTTTTCTTTCATTTTGACATAGCGATATAAAAGTATATTGCAAGATCATCGAGATCTTCCTATTGAAAAT GGCTAATTTCTTGACATACCTTTGGAATTTTTATTGCTTTCATTTTTGAATCGTCATTTTGCCCCTATTTTAACTGAAGG ATTATTGAAATGATGATCAATGATTAAACTTTGAGTTATTGTCATCAACAGGACCTCGTTCAAATAACTTCTATTTTTCT ACTCATTTGGTTGTCTGAGTACTCAATTTTTGTTTTGGAGATTGCAAATCTTTTGGGGGCTGGTACTAATGATTTGTTGT TGCTAGCATATCTTCGATGATGTCAATGATAATGTTAATTGAAGTTATCATTACCATTTTATGGTAAACTTTTAGGATGC TAAACTTCCAACTGTTTTTCGCTCTTTTACAGATTATTTACCTATTATTATTCTTAATATTGTTTTTCAATTTGGATGTG GAGGAAATTTTTTATTTCCAAGGTTTACATGGTACAGACTGTGTTTTTTGCTTTTATTAATGGTGTTTTATCTTCTCTGA CTATTTCACTTTGGCGTCTTCTATCATCCAGCCACATGTTGACTTTGGGCTAAAGCTTATAGGGGCTGATCTTATGTCTA TTCCTGGTCTCTATAGGTTTGTTCAGGTACATGCCTATGTCTTATTGTATTGGTTTCTCCCTTCTTTTTCCTATTTGGGT TGTGGAAGTGTAAAGTTGCTCATATTCATCTTGTACACTCAAGCTCATTGTATAATTGATAACCTAATGTGATAGTAATG AACTAATCTTTGTACATTTGTATCATATTTCTTAGTGTTGATCATTGATTTGTGTACATATATGTTAAAAAACCTACACT TGTAAAGGATGAGAGCATTATCATGGAAGGATTCCAGGTTATGTTTTCCAGAAACAGATAGAACTCGATAGCTAAAGAAA TAATATCAAAGAGTGTTGTTTTCAGGAGCTTATCAAAGATCAGGTTGCAAATATGTATCTATGGCCCAAAACACTGGAAG TTCAAGTTTTAGATCCAACAAAGTACGCATCTCCATTTTCCAAAATGTTTTAATTACATGTTTGAAACTATTTTAACTCT TTTCTATTTTTTCTTATAAACATTGGTGATCTTAGAGCCTTGAGGAAGCCTGTTGGAATTTTAAATGCAAAGGTTCTAAA AGCAATGAAGTTAAAGAAGAAAGATCTTCTCGGCGCATCTGACCCTTATGTGAAGCTAAAGCTCTCAGGAGATAACCTGC CATCAAAAAAGACTACTGTGAAGCACAAGAACTTGAACCCTGAGTGGAATGAGGAATTTAGTTTAACTGTTAAAGATCCT GAGTCCCAGACTTTAGAGTTTAACGTTTATGACTGGGAGCAGGTAAATGTCTTCTCCTGAAAGTGTTTGCTTCTAGTTTT GAGTTAAGCATATGAACTGAGAACATGTTTGAATCAACTCATCTTTCATTAAAATCAATTCTAAAACTCAAAAGTAACTC ATAAAAGCTTCTCGCCATAATTGATTCTGGCTTCAAAATCAATTGCGCGCAGACAAGTTTCTGAACATGGGCTGAATGTT GTTTTTGTATCTTTTATTAGGTTGGGAAGCATGACAAGATGGGAATGAACGTGATTCCTTTGAAAGAACTTCCTCCTGAA GAGCCTAAAGTTTTTACTCTTGACCTCCTAAAAAACATGGATCCCAATGATGCCCAAAATGACAAGTCTCGTGGGCAGAT TGTTATAGAATTAACATATAAACCCTTCAAGGAGGAAGACTTAGCCAAGGGTTTTGATGAGACACAGTTACAAAATGCTC CTGAAGGTACTCCTGCGGGTGGAGGTCTGCTTGTAGTGATAGTCCATGAAGCTCAGGACATTGAAGGAAAGTATCACACC AATCCACATGTACGTCTTATTTTCAAAGGGGAAGAGAGAAAGACAAAGGTACTTGATCTAAAAACGTGTAATTACTTATA CATTTTCTTTCTTCAGGAAATAATGAAAATCACCCCTACTGCAGGATGTGGAATTGTTATTTTTCATGATAAATGAGAAA AGTAGATGTTTGTTAATATTCTATTCGAAACCGGTTTTTACCATATGATATGATGTTGAATTACTGATGATATGTCTCTA CTATTACAGAGCATGAAAAAGAACAGAGATCCAAGGTGGGAAGAGGAGTTCCAATTCATGGCAGAGGAGCCTCCTGCTAA TGAAAAATTACATGTGGAGGTTGTCAGCACTTCATCGCGAAACCTGCTACGTCAGAAGGTACATGATTTATAACTTCTTC ATCCTTAAACCTGTAAGTAGTTTTGTTGTTTCTTCTACAAGAGCTAGAGTAAGGAGCCTCATATTGTTTGAAGGAATTAA TAATACTTGTGGAATTAATTTGCACTTAGATTTTAGTGACTGGAGATTCAAATATAGAAATGTACGATGCAGTATACCAA AGACAATGTATGCCAATATAGCTGTATTATTTACCTTTTATGTTACTTTTATATGATTGAGTTTTATTGTTTTGTTCTCC TTTGGCACTAGGAATCACTCGGTTATGTGGACATCAGTCTTGCGGATGTTGTTGCTAACAAGAGAATCAATGAGAAGCAC CATCTTATAGACTCCAAGAATGGTCGCATCCAGATAGAGCTACTTTGGAGAGCTTCATAAACTAG
CDS sequence (LotjaGi1g1v0559400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGTGTATATGACTGATGAGAAAGAGTTAATTATGGAGCCTTCTATAAGATGGGCCGGAAATCCTAATGTTATTAT TGCAGCTAAGGCATTTGGTTTGAAAGCAACCATTCAGGTGGTGGATTTGCAAGTTTTTCTTGCACCTCGTATTACTTTGA AGCCTTTGGTTCCAGCTTTTCCATGCTTTGCCAACATCTATGTTTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTA AAGCTTATAGGGGCTGATCTTATGTCTATTCCTGGTCTCTATAGGTTTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAA TATGTATCTATGGCCCAAAACACTGGAAGTTCAAGTTTTAGATCCAACAAAAGCCTTGAGGAAGCCTGTTGGAATTTTAA ATGCAAAGGTTCTAAAAGCAATGAAGTTAAAGAAGAAAGATCTTCTCGGCGCATCTGACCCTTATGTGAAGCTAAAGCTC TCAGGAGATAACCTGCCATCAAAAAAGACTACTGTGAAGCACAAGAACTTGAACCCTGAGTGGAATGAGGAATTTAGTTT AACTGTTAAAGATCCTGAGTCCCAGACTTTAGAGTTTAACGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGG GAATGAACGTGATTCCTTTGAAAGAACTTCCTCCTGAAGAGCCTAAAGTTTTTACTCTTGACCTCCTAAAAAACATGGAT CCCAATGATGCCCAAAATGACAAGTCTCGTGGGCAGATTGTTATAGAATTAACATATAAACCCTTCAAGGAGGAAGACTT AGCCAAGGGTTTTGATGAGACACAGTTACAAAATGCTCCTGAAGGTACTCCTGCGGGTGGAGGTCTGCTTGTAGTGATAG TCCATGAAGCTCAGGACATTGAAGGAAAGTATCACACCAATCCACATGTACGTCTTATTTTCAAAGGGGAAGAGAGAAAG ACAAAGAGCATGAAAAAGAACAGAGATCCAAGGTGGGAAGAGGAGTTCCAATTCATGGCAGAGGAGCCTCCTGCTAATGA AAAATTACATGTGGAGGTTGTCAGCACTTCATCGCGAAACCTGCTACGTCAGAAGGAATCACTCGGTTATGTGGACATCA GTCTTGCGGATGTTGTTGCTAACAAGAGAATCAATGAGAAGCACCATCTTATAGACTCCAAGAATGGTCGCATCCAGATA GAGCTACTTTGGAGAGCTTCATAA
Protein sequence (LotjaGi1g1v0559400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVYMTDEKELIMEPSIRWAGNPNVIIAAKAFGLKATIQVVDLQVFLAPRITLKPLVPAFPCFANIYVSLMEKPHVDFGL KLIGADLMSIPGLYRFVQELIKDQVANMYLWPKTLEVQVLDPTKALRKPVGILNAKVLKAMKLKKKDLLGASDPYVKLKL SGDNLPSKKTTVKHKNLNPEWNEEFSLTVKDPESQTLEFNVYDWEQVGKHDKMGMNVIPLKELPPEEPKVFTLDLLKNMD PNDAQNDKSRGQIVIELTYKPFKEEDLAKGFDETQLQNAPEGTPAGGGLLVVIVHEAQDIEGKYHTNPHVRLIFKGEERK TKSMKKNRDPRWEEEFQFMAEEPPANEKLHVEVVSTSSRNLLRQKESLGYVDISLADVVANKRINEKHHLIDSKNGRIQI ELLWRAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 407 | 407 | 2.4E-242 | – | |
| ProSiteProfiles | 1 | 120 | 120 | 15.283 | ||
| PANTHER | 1 | 407 | 407 | 2.4E-242 | – | |
| Pfam | 4 | 118 | 115 | 6.3E-7 | ||
| Gene3D | 127 | 280 | 154 | 1.4E-35 | ||
| SUPERFAMILY | 128 | 264 | 137 | 9.23E-32 | – | |
| Pfam | 131 | 229 | 99 | 2.7E-23 | ||
| SMART | 132 | 232 | 101 | 1.5E-21 | ||
| CDD | 133 | 235 | 103 | 3.81262E-26 | – | |
| ProSiteProfiles | 133 | 217 | 85 | 17.264 | ||
| PRINTS | 148 | 160 | 13 | 9.1E-8 | ||
| PRINTS | 175 | 188 | 14 | 9.1E-8 | ||
| PRINTS | 197 | 205 | 9 | 9.1E-8 | ||
| SUPERFAMILY | 288 | 404 | 117 | 2.23E-18 | – | |
| Pfam | 289 | 388 | 100 | 6.5E-13 | ||
| SMART | 289 | 387 | 99 | 2.2E-9 | ||
| Gene3D | 289 | 407 | 119 | 2.3E-23 | ||
| ProSiteProfiles | 290 | 372 | 83 | 10.294 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi1g1v0559400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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