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LotjaGi1g1v0559600.1

Overview

Field Value
Gene ID LotjaGi1g1v0559600
Transcript ID LotjaGi1g1v0559600.1
Lotus japonicus genome version Gifu v1.2
Description MYB-related transcription factor; TAIR: AT4G38620.1 myb domain protein 4; Swiss-Prot: sp|P81393|MYB08_ANTMA Myb-related protein 308; TrEMBL-Plants: tr|A0A0S3R9U9|A0A0S3R9U9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0559600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:109209512..109211579) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGCTACGTCAGCCCCTCCGTTAGTTTTTTAACGTCAATTTGATGGAGGAGCATTCGCTATACTTTCTCAAAACATTG AGGGTACAAGCGTCGACAAAATTAGAAGAGGGGTGTCATTTGCACGCCCCTGAAACATCAGGGGCACATAATGCATTTAA GCCATTTTGTTTTCATTGGCTTTCAATTTGTATATATTTTTCTTCCACAGTTGATAGGTGAGAAACTAATCTCTCAAATA CTCTCAGATACAAAATGAGGACTCCTTCCAATCTCAACCCTATTTTCCGGTAATCAAATTTAGCATCATTCTTGAAAGAC CCAAACCTCTTCCACACTCGAATCATACACTTGAAAGATCATATATCACATTGTATCTTTATCTTTGTGTCTCACGATTT TGATGTACATTATTGGAAAGATAAACCAGCCAGCCACTCTAGTCTAACTAACATGTCTCACCAACTCACATATCTAGAAG CAATGAGGGTCACTTGTTCTCTCTCTCTCTGTCTCTCTCTATAAAACCCACACCCCCATATCCTGCAAGGGCCGGCCATA TTCTTATCTTACGGGCAACACAACAAAGAAAGCAAGAAAGAGTGGTTCCCTCATCAATCATTCCAATTCCACCAACTCAA CTCAACACAACACAACACAAAGAAGAAGAAGAGAAATTAATTAACATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACAC AAACAAAGGAGCATGGACAAAAGAAGAGGATGATCGCCTCATCGCTTACATTCGAGCTCACGGCGAGGGCTGCTGGCGTT CTCTTCCCAAATCCGCCGGTCTTCTCCGCTGCGGCAAGAGCTGCCGTCTCCGATGGATCAACTACCTCCGCCCTGACCTC AAACGTGGCAATTTCACCCCTCAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTGGGCAACAAGTAAGCAACCTT AGCTTAGCTCAAACAATTAAATCAATCAAAAAGATTATTATTTTATTCAATTTTTGACATGGGCATGTGGGTATATAGAT GGTCTTTAATTGCTGGAAGATTGGCTGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACTCATATAAGAAGGAAG CTTTTGAGCAGAGGAATTGACCCTGCTACTCACAGGCCTCTTAATCAAGAACAATCTGAATTAGCACCAGCTGCCACCAC AACCACTATTTCTTTCAAACAAGATGAAGATCATGAAGATAACAAGACCGTGTTTGGGGAGATTAATAAGGATTCAAAGG GAGGATCCATCTCCATAGAACGCTGCCCTGACCTCAACCTTGAGCTAACCATTAGTCCACCCCATCAGCCAATGATAAAG AAAAGCAGCAGCCTCTGCTTTGACTGTAGTTTGGGACTGCAGAATAGCAAGGACTGCACCTGTGAGATTAATACCGCTGC TGGTTATGATTTCATGGATTTGAAAACCAGTGTTCTTGATTACAGAAGCTAGGACCGTGTAGCAGAAATTAATATAGCTA GCTATAGATGGAGATTGGAGAGGAATGAGGAAATGGAATCCATCAATTTTTTGGAATCTCTCTTAATCTCTTTTTTCTTC TTTAATTTGTAAAGTTATCAATTAGTTGTCTATGCAAAAGAATTAAAAGATCCACTGCCAGTACAGTTCAACATTTCTAG TCCATGTTTTTATGTGTTGCTATTTTCAGGTCATATTTTCAGTTCTATATATTATTTATTTTACTAAAATTTAAAACAAA TAGAAGCTCAGATCGATAAGTAGAATTGATTTTTAAGGAAATTAATTTATATTTCTAGCAACTAGCAAGCAATAAGCAGA AACGACAGAATGGGTGGTACAGTACACTAATAGTCTAATACTAATCATATCCTAAAAACTATAGTCATCCCACATGTAAT AGAGAGCATCAATTTTCAACAATGAACACCACACACACTTGATCATCATTTTCAAATGTGTTAGGTAGGAACATTAGAAG CTTCCATCCACGAGATATTTGGGGTGGGGGAGTTGTGTGATTTGAATTCATTGCTTTTTCTTCTAGAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0559600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACAAAAGAAGAGGATGATCGCCTCATCGC TTACATTCGAGCTCACGGCGAGGGCTGCTGGCGTTCTCTTCCCAAATCCGCCGGTCTTCTCCGCTGCGGCAAGAGCTGCC GTCTCCGATGGATCAACTACCTCCGCCCTGACCTCAAACGTGGCAATTTCACCCCTCAAGAAGATGAACTCATCATCAAA CTCCACAGTCTCCTGGGCAACAAATGGTCTTTAATTGCTGGAAGATTGGCTGGAAGAACAGACAATGAGATAAAGAATTA CTGGAACACTCATATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCTACTCACAGGCCTCTTAATCAAGAACAAT CTGAATTAGCACCAGCTGCCACCACAACCACTATTTCTTTCAAACAAGATGAAGATCATGAAGATAACAAGACCGTGTTT GGGGAGATTAATAAGGATTCAAAGGGAGGATCCATCTCCATAGAACGCTGCCCTGACCTCAACCTTGAGCTAACCATTAG TCCACCCCATCAGCCAATGATAAAGAAAAGCAGCAGCCTCTGCTTTGACTGTAGTTTGGGACTGCAGAATAGCAAGGACT GCACCTGTGAGATTAATACCGCTGCTGGTTATGATTTCATGGATTTGAAAACCAGTGTTCTTGATTACAGAAGCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0559600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTPQEDELIIK LHSLLGNKWSLIAGRLAGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNQEQSELAPAATTTTISFKQDEDHEDNKTVF GEINKDSKGGSISIERCPDLNLELTISPPHQPMIKKSSSLCFDCSLGLQNSKDCTCEINTAAGYDFMDLKTSVLDYRS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF1139
1 200 200 2.6E-94 –
PANTHER
PTHR10641
1 200 200 2.6E-94
IPR015495
ProSiteProfiles
PS51294
9 61 53 16.576
IPR017930
Gene3D
G3DSA:1.10.10.60
12 67 56 7.3E-18 –
SUPERFAMILY
SSF46689
13 108 96 7.26E-29
IPR009057
SMART
SM00717
13 63 51 2.1E-13
IPR001005
Pfam
PF00249
14 61 48 1.8E-14
IPR001005
CDD
cd00167
16 61 46 6.3924E-11
IPR001005
ProSiteProfiles
PS51294
62 116 55 27.71
IPR017930
SMART
SM00717
66 114 49 2.0E-16
IPR001005
Pfam
PF00249
67 111 45 9.2E-15
IPR001005
CDD
cd00167
69 112 44 7.06303E-12
IPR001005
Gene3D
G3DSA:1.10.10.60
69 116 48 3.1E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0559600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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