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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0559800 |
| Transcript ID | LotjaGi1g1v0559800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase; TAIR: AT4G38650.1 Glycosyl hydrolase family 10 protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A0B2QJS4|A0A0B2QJS4_GLYSO Endo-1,4-beta-xylanase A; Found in the gene: LotjaGi1g1v0559800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109230588..109235741) extracted from Lotus japonicus Gifu genome v1.2.
CTGGGGATGAGATTGAATCAAAATTAAATGAGCTATGTCTAAAAATTGTCTATTATAGACAGGAGTTTCATTTATTAAAT AGGTTTAGGTGATGTGTAATTATTTGTAGAAATTTGTAACCAAGACTCCTGATGCATCATAAATTACCAATTGACCAGTC TGCATAATAAAAGTTAAAAAATTGGCATCTGCATATATGCAAAGCATTCTATTAGAGTGGGTGGCAGGGTGTATATATAG TATACAATTAGTCAATTATAGTAATAATAATTGTGACACACTTAACAGTCACATGAATCCCTCTTTCACAATTTGAATTA GCAGAGCATGTGAATGAAGCAGGACACTCACACAAGTCCTCTGTTCCCTTGTGATATAGTATCATATATCACCTCCCTCC ACATTCATTTCTTGTCGTTTCTTTCTCCTTCCCTCTCGACTCTCGTGTTTTCTGGGAGACTGCAGACAGAACTACTAACA CGGGCATATTTGTATTTATTTATGTATTATTTATATATGCTCAACTTAACACCCCCTTTCACACTCTAAGTCCAATGGTG CAAGATATTCCATCCTGTTGTCACATATTTTTCTTCCTTCTTCTTCTACTTCGCCCTTCTTCCGTTTCTCCTCTCTATGG TAAGTTAATTATAATTGCTATACTCCTTAACTTCCCTGACCAACTAGTTTGAGAATCAAATTTGAAATCAATAATATTAT TCATCAACTAGTTTTTTTTATTTCTGTGTTGCAGATGGGCCCCTATATGATTTTACTGCTTACACTGAGGTAATTAAAAT ACAAGCATTTCATGTTCATTCTTTGATGGAAAATTTAAAGGACTACTTGTGCTGTGTCATTGTGTGTGTTGACACTTGAC AGTGTAAAGAACATCCTGAGAAGCCACTTTACGGAGGAGGAATCTTCAAAAGAGAGTCTCAGTACTCTCAAAGTGGTGCT GTTGTTGAAGATAGATTTGCCTCCAAAGCTGTCAATGGCTACATGCCTTCACTGCTTCTCAACAATCTCACTCAGGCCAC CATCTACTCTTTTTCCAGTTAGCTCATGTTCTTTACACTCTTTCCATTACTTCATTTTTTAGCTTAAAAAACAGTCATTT TTTAATTAAAAAAATTAAATATTTATTTAAAAAAGAAAATTCCGTTGCCGGGACTTGAACCCGGGTCTCTCGGGTGAGAG CCGAGTATCCTGACCAACTAGACTACAACGGAATGTTGATGATTAGCAAAAATATAAGTAATTATTTCTAAACATCATTT TTTCACAGTATGGGTGAGGGTTCAAGGTTCAAATTCAGCTATGATAAGGGCCAGCCTGCAAGGGGAAAAAGATGCATTTG TTTGCATTGGGACAGTTTCGGCTAAGAGTGGATGCTGGTCGTTTCTGAAAGGTGGATTTGTTCTGGATTCACCTTCTAAT TTATCTACAATCTTCATTCAGGTACCTTGCTTTTTTTCATCATTTCATTCAGTGTTATAACTTTTCACCTTCATTAGTGA TTTGCTTTAAGATATTTGGTAATTTATGCAGAATGCTGGTGGTAATGATGTCAATATAGATATAGCAAGCCCCTCACTCC AGCCATTTACCAAGCAGCAATGGAGAATCAATCAAGAATATATAATTAATCATGTGAGGACAAGAAATTTCACTTCATTA TTTGAGCAAAACAATGGAATGCATAGTTGTTGCTTCTTTTTACTCACCATGTTCAAACAACCAAACTAATAGCGCTAATG GGTTTAGCTTTAACTAACCAATTTAGGTTCCAAAATTATTTCTAGCATTTGTATCTTTTTAACCTATGTATTGGCTTTTG TACATACAATGTAACCAAACAAATACTAACTAGATGTTTGGTTTCACGATTTGCACATAGTCCAATACACGTTTACTCAA AAACTAAGACCTGAATCCTCTAACCAGAAATGATTCTAAAGCAGTTCACTGTGGAACTAAACATGCTATGAACTGATCAA AAAGTGATTTTGTTGCGAAGACTCTCTCAATGAAGTAGGAAAAAAACAACAAAGTTATGTGCTTATAGAGCAAACAGCTG AAGGAAGAAGAATTTAATCTTGTTTCCCTCTTGCATTTGATAGCAAAGAAAGCGTGCCGTCACTATTCATGTCTCAGATG CTAAAGGAATGAAATTGCAAGGAGCTGCTATCTCTATAGAACAAATCTCAAAAGACTTTCCTATTGGATCTGCCATAGCA AAGACCATTCTTGGAAACTTACCCTATCAGGTTTGCAATTGAATATTTTACATGTACCCCATCATCCACAACATAGTAAC AAAATAAGCCTCATTCATCTGTTTGTACAGAATTGGTTTGTGAAGCGGTTCAATGCTGCAGTCTTTGAAAATGAGCTCAA ATGGTATGCCACTGAGCCTCATCAAGGCCAGGTCAATTACACAATTTCAGACCAGATGCTGCAGTTCTTGAGAGCCAACA AAATCATAGCTAGAGGGCACAATATATTCTGGGAAGACCCTAAATACACTCCAGCATGGGTTCTCAACCTTACTGGTATT CAGTTACGATCTGCGGTGAACTCCCGAATACACAGTCTCATGAACCAATACAAAGAAGAGTTCATACACTGGGATGTCAG CAATGAAATGCTTCATTTTGATTTCTACGAGCAAAAGCTTGGACCTGATGCCACATTGCACTTCTTTGAGACTGCACATA AGTCAGATCCTTTAGCAACCCTATTTATGAATGACTTCAATGTTGTGGAAACATGCAGTGATGTAAATTCCACTGTTGAC GCTTTTATCTCAAAGATAAGAGAACTTCAACAAAATGGTGTCTTCATGGATGGAATTGGCTTGGAGGGTCACTTTACAAC ACCAAATCCTCCCCTTATCAGAGCTATCTTAGACAAGTTGGCAACACTAGATCTTCCTATTTGGCTTACTGAGGTTGATA TAAGCAAGACACTTGATCAAGATACACAGGTGAGCAAGAGAAATTCAAATTCTCATATATATAAATGAACAAAATTAAAA TGGAATTGCCTTTTTTTTGCCTTATTGAATTAATCTCTTTGTTGTTGCTTAGGCAATTTATTTGGAACAAGTGTTGAGGG AAGGCTTCTCTTATCCTTCTGTGAATGGGATAATGCTTTGGACTGCACTTCATCCAAATGGGTGCTACCAAATGTGCCTC ACAGACAATGATTTCAGAAACCTCCCATCAGGTGATGTGGTAGACAAACTTCTTGAAGAGTGGCATACTGGTCTTGTAGA GGGAGTTGCAGATAAACAAGGTTCCCACAGCTTTTATGGGTTCTTGGGAGAGTATAGAATTAGTGTCAAGTATGGCAACA GGACTACAAGTTCAACATTCTCGCTCAGTGGAGGTGATGAAACTAGACATTTCACTGTTACATTGTGAAACTTTTCTTTT ATGTAAGAGACTGCTAACTTAACTAGAAACTCTAGTTTCAAATTCAAATGCTATCATAGATTAATACATCTTTGTGACGT TTGTTACATTTTTGTTCTTCATGCACACTAAAATTTGTATCCCTTTGTAATTTGTATTACTGTATTAGTATCCACACTTG CTGTTCAGCTTGGTTATGATACTAGAGCAAATGTCATAGCCATTGTGGTGGAATTGATTTGAATGAAATTCAAACATAGT TGTGTCTACCCTCTGATATTCTATGGTATCTAACAATTAAACAAAAGCAAGAACCATTTCAAAAGCCACATAGGCACATA CAATATAACATGTTGTATTCTGATATAATTACATAATTTACAATCAAATTCACCCACATTTCCCAACCAACAAATAAAAT ATACAGTACAGGAGCACGGAGCACCATATCAGCTATGATCTACAGATAATACAGAAAACATCAGAAAGAAACAATGATAA TTTAAGAGGTGAAGTGGAAGCACAAGACATGGCAGAACAAATTTGAGTTTTTAGAGAATTTTCAGACTTTTCCTTCAATT CTTGCATGGGTGAGTCCAACACAAGCATCAACAAAATCCTCATCAATGAAATCAGTGGACAAAACCTGAAGCTTATCAGC GCAGCCGTTAGCGAAGCACTGAGCAATGAAGAGCCTAGCATACCCATGAATGCGTCTGGTGACAGGTTTCACACACAGAA CAGGGTTATCCGCCACCGGAGTCACCGTGTTCTCCACCCTGTAGAAGTATTTCCTCGCCGAAACCGGTGGATGCTCGCCC AAATGCTTCAAATTTCCATCGAACTTGGTTGATGGCAGATCAGTGTTGATCCAATTATCCTTCAGATACCCTGCACTCCA CAGGGGATCCCCTGTTTTAGGCTGTGGAGATTTTCTCGGCTTCCAAACGCATATAACTCTCTTGGGTAACACCTCAGTGA TGGTCTTGCCAAAAACATGATCATCCTGGGAAATCAAGTACTCACCCAAATTTTCCTCCAAGTACTTGGAGAATTCAGGT GGATCCTCATGGCCAAACTCTGTTCTGATCTCAAGGATTATGATCTCATGCTCTGTTTCTGACAGAAACTTCTTGACATC ATTGATCACAACATCAACACTGTAAGTAACGAGGATACCGTGGCACACACGGCGATTCTCCTCCACCCGAATGTCGAGAA CACGGGTACCCTTCACAAGCTGGTTGTAGATGGAGAGTGATTGACATTGAGCAAAAGGGCGAGTGACGAGTGGGATACCA ATCTTGTTTGTTGCAGAATCATGTGTTCCAGGCCAAACAATCTGGTTGATGTGAAGTTTCTCTGGGTTGAGACCACTCAT CCAGTTTTTCCTGTCGGTGGGGTGGTATTCAGAGCCAGGGTAGTCTTCCCCTGAGCTTTTGAGATCATATAGAGTTTTCT TCTGGGTATGGATTGTCTTTCTTCTTTCAACCTGTTTAGAGACTTGAGATCCCATCCTCAGTGTCAAAGATATCAGATGA TGATGAAAAGTAGTTGTTCTTGATTCCTTGTTCTTCCTCTTCTGTAGTTTTGCTTTTTGTTCCAGCTAGAATTTGCTGTT GAACATAAAAGTCTCATCTCAATTGATTGGTTAACAATAATAATAATAATTAAGGGGTTTGGTATGGTAGAGACTAATGA GATTTGGTAGAAATTAATGAGATTTGGATTTATA
CDS sequence (LotjaGi1g1v0559800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCAAGATATTCCATCCTGTTGTCACATATTTTTCTTCCTTCTTCTTCTACTTCGCCCTTCTTCCGTTTCTCCTCT CTATGATGGGCCCCTATATGATTTTACTGCTTACACTGAGTGTAAAGAACATCCTGAGAAGCCACTTTACGGAGGAGGAA TCTTCAAAAGAGAGTCTCAGTACTCTCAAAGTGGTGCTGTTGTTGAAGATAGATTTGCCTCCAAAGCTGTCAATGGCTAC ATGCCTTCACTGCTTCTCAACAATCTCACTCAGGCCACCATCTACTCTTTTTCCATATGGGTGAGGGTTCAAGGTTCAAA TTCAGCTATGATAAGGGCCAGCCTGCAAGGGGAAAAAGATGCATTTGTTTGCATTGGGACAGTTTCGGCTAAGAGTGGAT GCTGGTCGTTTCTGAAAGGTGGATTTGTTCTGGATTCACCTTCTAATTTATCTACAATCTTCATTCAGAATGCTGGTGGT AATGATGTCAATATAGATATAGCAAGCCCCTCACTCCAGCCATTTACCAAGCAGCAATGGAGAATCAATCAAGAATATAT AATTAATCATCAAAGAAAGCGTGCCGTCACTATTCATGTCTCAGATGCTAAAGGAATGAAATTGCAAGGAGCTGCTATCT CTATAGAACAAATCTCAAAAGACTTTCCTATTGGATCTGCCATAGCAAAGACCATTCTTGGAAACTTACCCTATCAGAAT TGGTTTGTGAAGCGGTTCAATGCTGCAGTCTTTGAAAATGAGCTCAAATGGTATGCCACTGAGCCTCATCAAGGCCAGGT CAATTACACAATTTCAGACCAGATGCTGCAGTTCTTGAGAGCCAACAAAATCATAGCTAGAGGGCACAATATATTCTGGG AAGACCCTAAATACACTCCAGCATGGGTTCTCAACCTTACTGGTATTCAGTTACGATCTGCGGTGAACTCCCGAATACAC AGTCTCATGAACCAATACAAAGAAGAGTTCATACACTGGGATGTCAGCAATGAAATGCTTCATTTTGATTTCTACGAGCA AAAGCTTGGACCTGATGCCACATTGCACTTCTTTGAGACTGCACATAAGTCAGATCCTTTAGCAACCCTATTTATGAATG ACTTCAATGTTGTGGAAACATGCAGTGATGTAAATTCCACTGTTGACGCTTTTATCTCAAAGATAAGAGAACTTCAACAA AATGGTGTCTTCATGGATGGAATTGGCTTGGAGGGTCACTTTACAACACCAAATCCTCCCCTTATCAGAGCTATCTTAGA CAAGTTGGCAACACTAGATCTTCCTATTTGGCTTACTGAGGTTGATATAAGCAAGACACTTGATCAAGATACACAGGCAA TTTATTTGGAACAAGTGTTGAGGGAAGGCTTCTCTTATCCTTCTGTGAATGGGATAATGCTTTGGACTGCACTTCATCCA AATGGGTGCTACCAAATGTGCCTCACAGACAATGATTTCAGAAACCTCCCATCAGGTGATGTGGTAGACAAACTTCTTGA AGAGTGGCATACTGGTCTTGTAGAGGGAGTTGCAGATAAACAAGGTTCCCACAGCTTTTATGGGTTCTTGGGAGAGTATA GAATTAGTGTCAAGTATGGCAACAGGACTACAAGTTCAACATTCTCGCTCAGTGGAGGTGATGAAACTAGACATTTCACT GTTACATTGTGA
Protein sequence (LotjaGi1g1v0559800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQDIPSCCHIFFFLLLLLRPSSVSPLYDGPLYDFTAYTECKEHPEKPLYGGGIFKRESQYSQSGAVVEDRFASKAVNGY MPSLLLNNLTQATIYSFSIWVRVQGSNSAMIRASLQGEKDAFVCIGTVSAKSGCWSFLKGGFVLDSPSNLSTIFIQNAGG NDVNIDIASPSLQPFTKQQWRINQEYIINHQRKRAVTIHVSDAKGMKLQGAAISIEQISKDFPIGSAIAKTILGNLPYQN WFVKRFNAAVFENELKWYATEPHQGQVNYTISDQMLQFLRANKIIARGHNIFWEDPKYTPAWVLNLTGIQLRSAVNSRIH SLMNQYKEEFIHWDVSNEMLHFDFYEQKLGPDATLHFFETAHKSDPLATLFMNDFNVVETCSDVNSTVDAFISKIRELQQ NGVFMDGIGLEGHFTTPNPPLIRAILDKLATLDLPIWLTEVDISKTLDQDTQAIYLEQVLREGFSYPSVNGIMLWTALHP NGCYQMCLTDNDFRNLPSGDVVDKLLEEWHTGLVEGVADKQGSHSFYGFLGEYRISVKYGNRTTSSTFSLSGGDETRHFT VTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 26 | 7 | - | – | |
| PANTHER | 21 | 562 | 542 | 2.8E-277 | – | |
| PANTHER | 21 | 562 | 542 | 2.8E-277 | – | |
| Phobius | 27 | 563 | 537 | - | – | |
| Gene3D | 50 | 169 | 120 | 1.5E-7 | ||
| SUPERFAMILY | 78 | 158 | 81 | 9.35E-5 | ||
| ProSiteProfiles | 209 | 505 | 297 | 34.671 | ||
| SUPERFAMILY | 209 | 511 | 303 | 1.1E-90 | ||
| Gene3D | 211 | 513 | 303 | 4.3E-70 | – | |
| Pfam | 217 | 476 | 260 | 3.1E-46 | ||
| SMART | 255 | 506 | 252 | 2.6E-10 | ||
| PRINTS | 286 | 298 | 13 | 5.0E-6 | ||
| PRINTS | 330 | 341 | 12 | 5.0E-6 | ||
| PRINTS | 368 | 379 | 12 | 5.0E-6 | ||
| PRINTS | 401 | 413 | 13 | 5.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0559800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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