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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0560200 |
| Transcript ID | LotjaGi1g1v0560200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomeric repeat-binding factor 1; TAIR: AT1G15720.1 TRF-like 5; Swiss-Prot: sp|Q6WLH3|SMH5_MAIZE Single myb histone 5; TrEMBL-Plants: tr|A0A1J7H3F4|A0A1J7H3F4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0560200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109250696..109254928) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTATATCAATCATGATAGGTAAAATCTGAAAAATAAAAATCCGCCAAACACACTAGTTCTAGTACATACATACATGA TACATCTCTTATCTCACTTTCCCCTCATTTCCATTTAAAATTGAAAGAAAAGAAAAATAAATTTCAATTCACACCATTTT TCATCATTCACCTTTCACCCCGCCTTTCCCAATTTCCCGCTTCGTCTTCCCCTTTCTTTTCAAAAATTTCAACCCTGTAA ATTCAATTCTCCAACTTCGTAGAAACGAAATCGCGGTTGCTGTAGTTACAGTGAGCGGAGAGAATCAGTTGAAGCTTGTA AGAGAAGTCGAAAATGGACGGCGATACTGGACGCTGGGCGTTGGAGTTCTTCATCGGAAAGCGAATCATAAACAACACCC TAATCCAAGAAATCATTCGCACAATCAAGGTTCCTCCCAACCCTAATTCCTACTTCATCAAGTCCCTTCTCCTCAGAATC CTTCAAGAGAGGCTGCAGATTGAGTCAATCGATGAATCCATGCTCGAAATCATGGAGATCCTCGAAGAAGTTCTTCGATC CGAGGGCTCTCCCGTCAGTGCCTCCTTTACCGCCGCCTATTGTGCGGTGGCGGTGGAATGCACCCTCAAGTACATCAAAC TGGAAGGATCTATTCCTCGTTACTTTGATTCTGTCAAGACAATATGGTGGAAAAGGGTTATGAACATGAAACCCTCGCCT GGTGGTGAAAAACGAAGCCTCTTGTTCTCCGACGAGTTGGATAGGTGGAGAATTGACATTGAGGCTTCACTGAATGATCC TTGTGTAAGGGATCGGTTGGCAGCCACCGAGAACACCAGAAGCGTCGCCATTAACCGGCTCAAGGTTTTTTTCGCAGAGT TGTGGGAAGGCGTGGACCCTTCTTTTCTTGAGCTCGCTGTGGAGAATGCGGCAACGGATGCTGCTGAAGAGCAACAGAGA GGTTCTTTGATCACTCCTTTCCTTTTTTGCCTCTATTTCAGTTCACTACAAGAATTAGAATCTGTGTGTATTTGTTGAAT TTAGCATGTTTGGAAAATTTCCTAAAATTGATTTTACAATCAAAATCAATTATGGAGAGAAGCTAATGTGAGTAACTTAT AAGTGTCATAATTGATTCTAAGAGAAAATAAGTTGATCAAAACATGGAAGATGGCTTCCTAGTTCCTGGTCTTTGTTACT GCTGACAGTGTTGGGTGTATGGATACACCTATTTAAGTGGTTGAGTAGGAAGAGAAAGCTCCATTTAGGAGCTTTGGATA TTGATTGCTAGGAATCTTCATTCACACTATAAATTATCAACAGTTCAACACAAGTTGGAAACACAAAATTAGCTAGCATT GCTATTAGCCCTTTTTAATTACAACTGATTTTTTCATTATGTTTGTCTTCAATAGAAACTCAAGAGGGTAATCTTCTGCT TGACGACATCTGCATTACTAATGTTGTTGAGGAAATGGATCCGTCAACAACTTGTCAGAGCGATGTTCCACCAACAACTA CAAATGCTCATGCTCATGAGGTAACCATGCTAGTAACTTCTTATTCTGGTGATTGATTCCATGTGACTCTTAAAGTAGTA TATTAGCTATTGATAGATGACTTACAGGGGGAGACATCAAATCGTCCTCAGTTGCCTAGCCCTAAGAGGAAGAGAGTTTC TCCTTTAAAGAAGTATGAACCAAGAAATGTTATAAAAAGGAGAACAACAAGAAAATGGAGTCAATTGGAAGAAGAAACTC TAGAGAAAGCAGTAAATAAGTATGTGGTTGTTCTAACTTCAATATTAAATTTTCATTGTCTATTTCAGGACACAAATTTG AACTCTTTGTCTGTTTAGTTTTGATTGATAAGAGAATAGGTTTGATGCAGTGTGAAACTCTTTGTTTCGTCATGTTCTCT TGTTCAGATTTGGCATAGGAAACTGGAAATTAATGTTAAATGCTCACAAAGATGTATTTGAAAGGAGAACTGATGTAAGC CTATTATTATTTTCCTTTTTTGGTGTATACTGACATTTTCTTTTTAAACTTATGCATTTGATGCCAATCAAATTACTTTT GTCAGGGTGATTTGAAGGACAAGTGGAGAAACATGAGGCGGTGTAGAAGCAAATAAGTAATTGGTTTTTTGGTCAACAAG ACGAATGATTTGAATCATTAGTTCAAACGTATAAATTGTAGTAGATTGAGCTCAGGTATGTAGCTTGCATTAAATATTAT GAGGGAGTGTTTTACCTCCCATAGTGGTTAGTTAAGCTTGAGTATGTCTTATATGTGGTCTTTTAGAAGAAGAAAAATTA ATGCAGGGGAGACATAGATAAGTTCCATTCGCAAAGAAATTTGTTCATTAAATCTTGCTGAAGGCATGAACTACTGCCGA ATGCTTGAAGTCTAGCTTTCTAAAGTTTGAATTATTCACTACTCTAACAAAACAGGTTCAGGAGGCGTTCAGATTCTGGA ACAAGTAAGAACTATCTTAAAAAACAGTACATATATATTATAACGAAGAAATGCAGCTCAGTTACAAAACCATTCAATGC ACCCCAAATCGCCATTTATACAGTAAAGATAATGACAAAAGCTATATAACAAGATTGAGTATTCTAGTTGCTTGTTTGGA TTAGTTTATTTTAGGGTCCAAAGTTTATAATCAATATATTCATAAGGCAGCTTTTAAAATAAATATTACCCCCAAAATAA CCATCTTCCAAACATGCTAAGAAGGCTATAGATTATTTGCAAGGCGTGAATTTGCAGGTGACATTTCCAGCACCAGAATT AGACCTCTTGAAGCGCAGAGCAGTGAGCAGGACACTCCTAGTTGAACCCATCAAAGCCTCATTCATGTGTTCAACTACGC CAATTGGATGGTAAGAGAATTGGAGGGTGTTATAAGAGTTAAGAAGTGCAGTAATCCCTTCTCTCAAAAGAGTCCTGTAA GGGTCTCCTCTCCCTTGCAACCCTTTCCACAGTGTAATGTCTGTTCCGTATCTCCTTGCTGCCACCATTCCAAAAGCTAC TGCAACTTTAGTGTCCTGGTTCACACCCCTCCAGTAGCATTTGTATTCTGGCATTGTCCACTTCCTGACAATTTAGAAAA CATTGACATTCTTGTAAATAAACCTATTTATCAAAGTCCTCATTTTGTACAAGGAAGCATGCAATTCAATATATATAGGT AGTAACAAATATCATGACTTCCATAGCAAGAATTGGACTTTGTTAGGCATAGATTTCATGAAACCATGAACCCTTTGCCA ATTCAAATACTTGATTACTTTTTCTTTTCTTTAACACTACATTGTATGCTGATCAGTAGTGGCAATGCAACTCTGATAAG TGTTGCTTTCATTTACCCTACTTTGCCTTGCATTTATGCAGGTGGTAAGGGTGTGGTCCCATTGATTTCATGTTTCAACA ACCATTAGAATGTAATTAACCCCTTACTACCGGAAGCTGAATACTGTCCCCAATGTCATAAAACTTACTCTGATGAGCAT GCTGAAGCTTCTGCGAAAATCACTGGTGGTAGTGGAGGCAATGGTGGTAGTGGAGGCAATGGTGGCAGTGGTGGAAGCCC GGGCATTGGAGGTAGGTTGAATTGTGGGGGAGACTTTGGTGGTGAGACTGGCGGCGGCACCGGGTTGGAATCGGAAGATC TTGAGCAGAATTGCATAGGCTGTGCTGGCTGAGCAAGTAGAGGATCCACCGTGTACATCTCCATGTCAAACATCCTGAAC ATGAGTCTAGGATTTTGGGCAGGACCAGCACCTTCACCACAATCCATTGAACCTTGCCCACTGCCTGATACAATGGCAGA ACAACCACCCAAGTCTGGTGCACCATCAAACCTCATTATGTAGCTTCCAAACATGTTAGTTGTTTCCTCTCTTGACATTG TGATTTGCCCATTGCTGTCAGCACAGGACAAGCTTACTTTTGCACCTGTAACCAGAAGCAACAGGGTGCAAGGCATAAAT AACTTTGGTCAAAAAGCAATTTTCAGAATATGTTATAAATAAATAGGCGGTGGCCAAACAGTACTTTATTAAATACATCT AGAGGGCTAGTTGGCCACCTGTTCAGACTCCATTTATTGAGAGAATGAAAAGGTAAGAAAAATGTTACTTGTCAATGCTT TAATTAGTTGATCTCACGTACTTCATAAATGTTAGAGATGAAAATACTCCCTCCGGTCCTATTTATAAGCATG
CDS sequence (LotjaGi1g1v0560200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGGCGATACTGGACGCTGGGCGTTGGAGTTCTTCATCGGAAAGCGAATCATAAACAACACCCTAATCCAAGAAAT CATTCGCACAATCAAGGTTCCTCCCAACCCTAATTCCTACTTCATCAAGTCCCTTCTCCTCAGAATCCTTCAAGAGAGGC TGCAGATTGAGTCAATCGATGAATCCATGCTCGAAATCATGGAGATCCTCGAAGAAGTTCTTCGATCCGAGGGCTCTCCC GTCAGTGCCTCCTTTACCGCCGCCTATTGTGCGGTGGCGGTGGAATGCACCCTCAAGTACATCAAACTGGAAGGATCTAT TCCTCGTTACTTTGATTCTGTCAAGACAATATGGTGGAAAAGGGTTATGAACATGAAACCCTCGCCTGGTGGTGAAAAAC GAAGCCTCTTGTTCTCCGACGAGTTGGATAGGTGGAGAATTGACATTGAGGCTTCACTGAATGATCCTTGTGTAAGGGAT CGGTTGGCAGCCACCGAGAACACCAGAAGCGTCGCCATTAACCGGCTCAAGGTTTTTTTCGCAGAGTTGTGGGAAGGCGT GGACCCTTCTTTTCTTGAGCTCGCTGTGGAGAATGCGGCAACGGATGCTGCTGAAGAGCAACAGAGAGAAACTCAAGAGG GTAATCTTCTGCTTGACGACATCTGCATTACTAATGTTGTTGAGGAAATGGATCCGTCAACAACTTGTCAGAGCGATGTT CCACCAACAACTACAAATGCTCATGCTCATGAGGGGGAGACATCAAATCGTCCTCAGTTGCCTAGCCCTAAGAGGAAGAG AGTTTCTCCTTTAAAGAAGTATGAACCAAGAAATGTTATAAAAAGGAGAACAACAAGAAAATGGAGTCAATTGGAAGAAG AAACTCTAGAGAAAGCAGTAAATAAATTTGGCATAGGAAACTGGAAATTAATGTTAAATGCTCACAAAGATGTATTTGAA AGGAGAACTGATGGTGATTTGAAGGACAAGTGGAGAAACATGAGGCGGTGTAGAAGCAAATAA
Protein sequence (LotjaGi1g1v0560200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGDTGRWALEFFIGKRIINNTLIQEIIRTIKVPPNPNSYFIKSLLLRILQERLQIESIDESMLEIMEILEEVLRSEGSP VSASFTAAYCAVAVECTLKYIKLEGSIPRYFDSVKTIWWKRVMNMKPSPGGEKRSLLFSDELDRWRIDIEASLNDPCVRD RLAATENTRSVAINRLKVFFAELWEGVDPSFLELAVENAATDAAEEQQRETQEGNLLLDDICITNVVEEMDPSTTCQSDV PPTTTNAHAHEGETSNRPQLPSPKRKRVSPLKKYEPRNVIKRRTTRKWSQLEEETLEKAVNKFGIGNWKLMLNAHKDVFE RRTDGDLKDKWRNMRRCRSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 213 | 213 | 2.4E-86 | – | |
| MobiDBLite | 232 | 275 | 44 | - | – | |
| MobiDBLite | 232 | 262 | 31 | - | – | |
| PANTHER | 251 | 336 | 86 | 2.4E-86 | – | |
| Gene3D | 274 | 340 | 67 | 9.0E-14 | – | |
| ProSiteProfiles | 280 | 339 | 60 | 11.468 | ||
| SMART | 284 | 337 | 54 | 2.7E-5 | ||
| Pfam | 286 | 334 | 49 | 1.8E-8 | ||
| SUPERFAMILY | 286 | 337 | 52 | 1.64E-12 | ||
| CDD | 286 | 336 | 51 | 4.395E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0560200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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