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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0561700 |
| Transcript ID | LotjaGi1g1v0561700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome-binding factor A; TAIR: AT4G34730.1 ribosome-binding factor A family protein; Swiss-Prot: sp|O65693|RBFA_ARATH Probable ribosome-binding factor A, chloroplastic; TrEMBL-Plants: tr|V7ATH5|V7ATH5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0561700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109395916..109398534) extracted from Lotus japonicus Gifu genome v1.2.
TAAGAGAGTCCATGGGCTTTTGGGATTTTTGTACATAGTGTCATGGGCTTTAGCAACTTTTTTGTTTAACAGGCTTCCTT ATGAGCCGGCCCAAAGCCCAACAAGGTTGCTTTCTCACCTTTCTGTTAAAAAAAGAAATGAATATCTAATCTCCTCTCTG GTTCGAAGGATAGAGTACAGCAATGACGACACACCTGCTTCACCTGCCGCTCATACCACCGCCATCACCGTCACCTTGGC GGCGTCACCACCACACATCCGCCGCAACCACCACAATTACTCCGCCGCGGACCGGGTGGGTCCAGCTACAGTCACAGTTA GGCAAGGCGGTTATTGGTTCGACAAGGAGGAGCATAAGGTGCATGGCGAATCCTCGGAGAGTGAAAATGGTGGCGAAGCA AATACAGAGGGAGCTTTCTGACATGCTCCTCACCGATAAAGTCTTGCAGTTCGCCGTTCTTCCTGAAGCTTCCTTAGGAG CTGACCGTTACCTCTCTTCCCTCACCACCATCACCGACGTCCAAGTCTCCGCCGATTTGCAGGTCGTAATTCTATTTATC TCAACTCTCACTGCATTCTCTTTTCAATTTTCTGACCTAATTGGAAGGTTAGGGTTGAACATTTGTAGGTTGTTAAGGTG TATGTATCTGTTTTTGGAGATGAAAGAGGGAAGGAAGTAGCCATTGCTGGGTTGAAATCAAATGCTAAGTATGTTCGAAG TGAGTTGGGGAAGCGTATTAAGCTGCGATTAACCCCTGAGGTTCGCTTTATGGAGGACGAGTCTTTTGAAAGAGGAAGCA GGGTAAGAATAACTCTACCACTGCTTGTTTATACAATTGCAAGTCTCTGTTGTTCTGTTTCCAGCTAGTCCTTTTTCATT ACATTCTCTTAGTTGCTTCTTTATCGCGAGCCACATTATTCCAAAGTCTATAAAAGGTTGCACATTATTCAAAAGTTTAT AAAATGTTGCTTAATCATGATGGATAGATGGGTCTGCAATTCAAGATTTTATGGACATGTAGGCTGTTATTACCACTAGT TAATGAACAATCTCTTGCACTGCTTGTTAAGGCCCTACATTGACTAAAGACATGACATAATTAGTCCTTATAAATTGGAG GACAATCCTCACCTTTAAGCTAGTTTTTGGGGTAGAGTTAGGCTTAGTCCAAATTCTAAGATGGTATCAGAGCCTATATT AGTTCTGTTTATTGGAGACCGCCCTTATATGAGCCACCCACAAGGGTTCATAATCATGCCTGCAAAATTCCATGCTCCTG ATGTCGGGAGGGTAATCCTCATCTCTAAGCTAGCTTTTGGGGGTAAAATTATGCCTAATCCAAATTCTAAGACTGCTACT CTCACACAAATAACATTTTAGGGTGGAGTAGGAGTGTAGGACCATTCTTTGGCGCCTAGATCAGTTTTTGTTTATGTGAT GGAATTGTGAGATGCGCATCAAGCCATAGCTAGTGCTCAGTTATGCATGTCATTCTTTTTCTGGATTTCAGCAACACTCT TTTATTGAGTGTGATGTGAGCTTTTACTGATCTGGTGCACCCACCACTTCAAATTTTTAGGTGATTGCAATATTAGATAA GATAAAAAATGAAAAGGGCTCTGAGGGTCAAACTAAGGAGCAGTTGGATTCATCAGCCCAAGAAGATGACGACGACAGTT GGGGTGGTGAAGACCCTGATGAAGGTATAATTTATGTGGAGTAGCTGCCTCCCAGTGCTTCAGCATTGTGCGTGCTAGAT ATGGAGAGATCTCTCAGTTTTGGTAAGTATGTTTTATGAACCTATTTCAAGAAGCACTTTATAAAATCCTATTCTGATGG TTGGTTTAAGTTCTGTTTAATCTATGGACAGATTGTTAGTCTCAAGTTTTCTAGGTTTATATATGCCAAAATTGGTTGGT GTTAGAACATCATGAATTGATTTTCATGGTGTATATAGTTATTAATTCCTCGTATGCAATGCAGGAAAACACTTCATTGA AACACTTATCTGGAATTATGCTGTTCTTGCTAGTAAGTGATGAGATTATCTGTGCTTGAAGCTTGGCTTTGCAATGTCAA CAGATTTGTTTGGTCTACACGGGACCAATATCTTGGCTCTCCCCTTAAGTGGTGTTAACACAGGATGGTAGTATCCAAGA GAACAAGAGTATATACTTCCTTTTCCTTGCTGTAATTTATTCCTGTAACGGAATTCATAATGCTTAGCTTTTTGGATCTC AGTATCCCAGTTGAGCTCTTATCACTTTTCATTAGTATGTTTAAATCAGGTGTGTGATACTGGCATGTTGCAAAAATGCC TTTGCACGTATTTCTTTTCATTCCATTCCTCTAGTGCAAAAGAATTTAAGTTGCTTGTATACATACTGGGTTGCAATTGT AGAGAAAGCTATAGTCATGGAAAGTATCTTAGTACATGATACAAGTTCATTGGTAATGATTTTTGAACATTTGATATCAC ATACTGATAACATATTGTATTAAACAATTGAAATCCTTCTGTCTTTTGGACAATAAAAATTATGGAAACATGTATTAGAA CTCCTCGTCTTGCTAAAATGAACAAAATGTTTACTCTGAACCAACTTCTCGTAGAAAAC
CDS sequence (LotjaGi1g1v0561700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACACACCTGCTTCACCTGCCGCTCATACCACCGCCATCACCGTCACCTTGGCGGCGTCACCACCACACATCCGC CGCAACCACCACAATTACTCCGCCGCGGACCGGGTGGGTCCAGCTACAGTCACAGTTAGGCAAGGCGGTTATTGGTTCGA CAAGGAGGAGCATAAGGTGCATGGCGAATCCTCGGAGAGTGAAAATGGTGGCGAAGCAAATACAGAGGGAGCTTTCTGAC ATGCTCCTCACCGATAAAGTCTTGCAGTTCGCCGTTCTTCCTGAAGCTTCCTTAGGAGCTGACCGTTACCTCTCTTCCCT CACCACCATCACCGACGTCCAAGTCTCCGCCGATTTGCAGGTTGTTAAGGTGTATGTATCTGTTTTTGGAGATGAAAGAG GGAAGGAAGTAGCCATTGCTGGGTTGAAATCAAATGCTAAGTATGTTCGAAGTGAGTTGGGGAAGCGTATTAAGCTGCGA TTAACCCCTGAGGTTCGCTTTATGGAGGACGAGTCTTTTGAAAGAGGAAGCAGGGTGATTGCAATATTAGATAAGATAAA AAATGAAAAGGGCTCTGAGGGTCAAACTAAGGAGCAGTTGGATTCATCAGCCCAAGAAGATGACGACGACAGTTGGGGTG GTGAAGACCCTGATGAAGGTATAATTTATGTGGAGTAG
Protein sequence (LotjaGi1g1v0561700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTHLLHLPLIPPPSPSPWRRHHHTSAATTTITPPRTGWVQLQSQLGKAVIGSTRRSIRCMANPRRVKMVAKQIQRELSD MLLTDKVLQFAVLPEASLGADRYLSSLTTITDVQVSADLQVVKVYVSVFGDERGKEVAIAGLKSNAKYVRSELGKRIKLR LTPEVRFMEDESFERGSRVIAILDKIKNEKGSEGQTKEQLDSSAQEDDDDSWGGEDPDEGIIYVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 48 | 225 | 178 | 4.7E-77 | ||
| TIGRFAM | 61 | 188 | 128 | 4.6E-23 | ||
| Gene3D | 61 | 178 | 118 | 1.4E-28 | ||
| SUPERFAMILY | 61 | 186 | 126 | 1.44E-27 | ||
| Hamap | 65 | 183 | 119 | 21.475 | ||
| Pfam | 66 | 183 | 118 | 1.1E-27 | ||
| ProSitePatterns | 149 | 170 | 22 | - | ||
| MobiDBLite | 190 | 225 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
Expression pattern of LotjaGi1g1v0561700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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