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IPR015946 is a K homology domain-like, alpha/beta.
<p>The K homology domain is a common RNA-binding motif present in one or multiple copies in both prokaryotic and eukaryotic regulatory proteins. The KH motifs may act cooperatively to bind RNA in the case of multiple motifs, or independently in the case of single KH motif proteins. Prokaryotic (pKH) and eukaryotic (eKH) KH domains share a KH-motif, but have different topologies. The pKH domain has been found in a number of proteins, including the N-terminal domain of the S3 ribosomal protein [[cite:PUB00011737]], the C-terminal domain of Era GTPase [[cite:PUB00011738]] and the two C-terminal domains of the NusA transcription factor [[cite:PUB00011739]]. The structure of the pKH domain consists of a two-layer α/β fold in the arrangement α/β(2)/α/β.</p> <p>This entry represents K homology domains, as well as related domains that share the same 2-layer α/β structure.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: 40S ribosomal protein S3-1-like [Cicer arietinum] gi|502131540|ref|XP_004501017.1| | 10 | ||
| – | PREDICTED: GTP-binding protein ERG-like [Cicer arietinum] gi|502166492|ref|XP_004513909.1| | 18 | ||
| – | PREDICTED: 40S ribosomal protein S3-3-like [Cicer arietinum] gi|502122563|ref|XP_004497806.1| | 18 | ||
| – | PREDICTED: probable ribosome-binding factor A, chloroplastic-like [Glycine max] gi|356517875|ref|XP_003527611.1| | 8 | ||
| – | PREDICTED: probable ribosome-binding factor A, chloroplastic-like [Glycine max] gi|356517875|ref|XP_003527611.1| | 13 | ||
| – | PREDICTED: GTPase Der-like [Glycine max] gi|356542027|ref|XP_003539473.1| | 22 | ||
| – | PREDICTED: GTPase Der-like [Glycine max] gi|356520141|ref|XP_003528723.1| | 27 | ||
| – | PREDICTED: GTPase Der-like [Glycine max] gi|356520141|ref|XP_003528723.1| | 17 | ||
| – | PREDICTED: GTPase Era-like [Glycine max] gi|356502167|ref|XP_003519892.1| | 23 | ||
| – | 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|I3S6J8|I3S6J8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0556400 | 19 | ||
| – | Ribosome-binding factor A; TAIR: AT4G34730.1 ribosome-binding factor A family protein; Swiss-Prot: sp|O65693|RBFA_ARATH Probable ribosome-binding factor A, chloroplastic; TrEMBL-Plants: tr|V7ATH5|V7ATH5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0561700 | 12 | ||
| – | GTPase Era; TAIR: AT1G30960.1 GTP-binding family protein; Swiss-Prot: sp|O82626|ERG_ANTMA GTP-binding protein ERG; TrEMBL-Plants: tr|G7KDM7|G7KDM7_MEDTR GTP-binding ERG-like protein; Found in the gene: LotjaGi2g1v0003800 | 26 | ||
| – | 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|I3SJI7|I3SJI7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0314100 | 19 | ||
| – | GTPase Der; TAIR: AT5G39960.1 GTP-binding protein; Swiss-Prot: sp|A7HYV8|DER_PARL1 GTPase Der; TrEMBL-Plants: tr|I1KNQ6|I1KNQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002800 | 27 | ||
| – | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B2V2K0|ERA_CLOBA GTPase Era; TrEMBL-Plants: tr|V7CCY5|V7CCY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 | 23 | ||
| – | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B2V2K0|ERA_CLOBA GTPase Era; TrEMBL-Plants: tr|V7CCY5|V7CCY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 | 28 | ||
| – | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B2V2K0|ERA_CLOBA GTPase Era; TrEMBL-Plants: tr|A0A0S3R4P9|A0A0S3R4P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 | 22 | ||
| – | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B2V2K0|ERA_CLOBA GTPase Era; TrEMBL-Plants: tr|A0A0S3R4P9|A0A0S3R4P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 | 22 | ||
| – | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B2V2K0|ERA_CLOBA GTPase Era; TrEMBL-Plants: tr|A0A0S3R4P9|A0A0S3R4P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 | 20 | ||
| – | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B0TAF1|ERA_HELMI GTPase Era; TrEMBL-Plants: tr|A0A0L9TNW9|A0A0L9TNW9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 | 23 | ||
| – | 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|A0A151SP15|A0A151SP15_CAJCA 40S ribosomal protein S3-3; Found in the gene: LotjaGi6g1v0008800 | 21 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd02413 | CDD | 1 | 4.76 |