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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0563900 |
| Transcript ID | LotjaGi1g1v0563900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|G7J7R7|G7J7R7_MEDTR Clathrin-binding protein; Found in the gene: LotjaGi1g1v0563900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109692434..109698304) extracted from Lotus japonicus Gifu genome v1.2.
CATCATCAACTCATTCATCTCCCCCTCCCCCTCCATCAAAGGAACAAATTAAAAACCCAAAGAATAAATTTTCACAACTT CTCATGATTTCCACTGCTCATCACCTTCCGGATCTGAGGAAGCATGAAGCTATGTCCCACATCTCACACCACACAAATTT CATGTCCTCAATTTAACGGAGATGCAAAGACAAAACCATTATTCAAAACAACCATAACAATGATAATTACAGCTAGCGGT GCCCAAATCCACATTATTTCCATTACAATGATAGTTATAATTTAAAAAAAAACCCCAAATTGAAAAAAAAACCCTAACCC ACAAACCCAAAATCCAGATTTGACAAGCCATGACCTTGTTCAGATCTTCTATCTTCGTCCACCTGAGGAACTCATGAAGC AAAAAGAGGGAAGGAAGGAGAGGAACCCATGACCTTCTTCAGAAACCTGTTCAAGAGCTCTTCAACTTGCAAACTCACCA CTCCCACGCCACTCTACCTTCCATCTTCAGACCCATGCCTATTTGCCACCGCCGGATATGCAAAGGTTACCATTGAAGAA GAAGAATAAGGTTTCGGTGGAGGATTTAGGAAAGAAAGTGATTTTAGGGTTATTTTGTTTATGGTTTTGGTTCTAAGGTT TCAGATGTGAATATGAAGGTGGTGTGGAATGAATTGATAATGAAGATTTTAATTTTTTTTCCCTGATCTGGTTCATGAAT GAAATGATGATGAAAAAAAAGAGTTTTTATTATTTATGGGTAAGATGATGAGGAGGAAGAAGATGATGGAGAGATTGAAG CTTTTCAGATTTAGGGATTTTGGTCAGGGACTAAATTGAAGCTTCTATGTTTTCCCCAACATTTAAATCCACGTGGCAAG TCCACTGGGGCACTTAACGTGCCAAATCACCCTTCCCGTTAACGTTCACTAACGGGAGCAGTGGCCAGGACCAACGTGAT TGACGATTTGCAACATTAGGGACCACGAGCGACATTTCCATAGAATAGGAACTAAAATGCCCGACGCGTGAAACAATAGG GACGAAAGTGACCGTTCACCCAATAGTCAATTCAAATTCAACTATTACCGTGCCTTATTCAGTCACTCTCATAAGAATAT TCAAAAGAACTAGTGTTAGACGAAGAACAGATCAACAGACCCCAAATATGAAAAATCTACCGCTGTAGTAAATTTCCTTC CACCACAATTTCCAAGAGCCTGTGTGCCCCTTTCTTTCTCTCTTGTTTCACTTCTGCTACGAACTCCGTTCCTCTCTTGT TGATTTGGTGAGTGGTTCTTTCTGAATCCAACAAACTCAACCACCGTTCGAGATTCAATCCACCAATCGAGCCTTGAATG GACGCTATCAGAAAGCAAGCCTCCAAGCTTCGTGAACAGGTCGCTCGCCAACAGCAGGTTCGTTCTCTTTCATTACAAAA CCTATTGATTCTGATTTCTTTGTTGTTCTCGCGATTACCTTTTCTTAGCGCTATTTTCTGAAGCAATAGTGATACCGCAT AGTATTGGATCTAACGATTATAACTGATTCGTGCTCTTGCATTGTTGAAACAATAATGTGAAGCTGTAATGTTTGATTTG TCTGAATCTTTTAGAACAATTTGATTATTGAGCTGGTATGTGGTATTTTAGCTTCTGTATAGATTGAACTCACTGGTTTT GGAGCTATTGCGGAGATTGAGATTTGTAATGAATTGGCAAAAATGAGTTTTTAATTTCTAGATGTATACTTATATGTGAA ATAGGGTAGAACTTTGATGTTTTATGATGATATGAAGATGTCATGAAGGAGAGGTATCATGCATTTTCTGTCATCCTAAG CCATGATGGCAGGCCGATTAACAAACTAAAAGAAAGGAAACAAAAATGTTTACATTCAAAGTAGCTTATAATACCTGCAA TCTGTTGTCCCTGTGAGACATTGGAGCACTTAATTGAAGAGATACTGTTCATATTACTATGGTCTGCATGATAGGGGTTG CCCTTCTTTTTGTATTATTTTTTGAACGGAACAAACATAAATAAGAAAAGCCACTGATTCTTTGCTTTAGAGGATGTCTT ATCTTCTTCTCCCTAGCTGTACTTATGCTCTCATCTGTGTCATGAAGTTTCTTACGTTATTTATAAGACATTATTCAATT CGTTTCTTGCTCCTTTTTTACCTGTTCTCAAATGTTTCTTAATTTTGCTTGCTTCCTCTATTGAGGTGTTAATAACAATT ATTGCGGTTTAGGCTGTGCTGAAACAATTCGGGGCTGGAGGGTATGGAGGTTCGGATAATATGGTTACTGATGAGATAGA GCTTCAACAACATCAGAAACTTGAGAAGCTTTACATATCAACGCGTGCAGGAAAGGTTGCTTGGCTTCTTCTGTATAAAT TCTCTAATTTTGTTTGTTTTATCTCAACTTATACCCCACCTCCCCACCTGCTTGGCTGATAATGACATATATTGTTTTTC AGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGGTTATATTGTTACCGGATCCAAGCAAGTTGAAATAGGTCAGTAA TGTTGGTTGTTGAACTATTCAAGAAACTTCCTTAGCATTTATTTTATAAAACTTAGCACAGGATGGGGCTTTGACATGTT TGTAAGTCAGTAAGAGAGAAGAAAAAAAAGGACGGTGGGCAGGGCTAGACAATGTGAGGCTAACAGAAATTATTTGTTTA TGAGAGGAGAGATAGGAATCTGTGAGTCAGGAGGAAACAGTTGTGGGAGAGTGTAAGAGAATGAGAATGTACATGTGGCA GCAGGCTATTGGAGAGGAGAATTGTGCCATGGTGTGAAAGGAAAGGTAGCTAGAATAAGGAGGGTTGGGAATAGTGGCAA GGAAGACAAGTATTTGGGAGTGAATTGGTGTCTTAGGACAGAGAATTGTACATGTATTAGCTGTGATTGTCCTTTCTTAT TTCTGCATTTCATCTATTCCATTGTCTGTGTTTTCATTCGTTGAGCTGTAATTTTCCCTTGCAAAGAAGATTTTTTTCCT TGAGTTTGATCCTATTTTCTGTATTAATACCAGTTCCTTTTAGTATAGTTATTGAGTTTCTATACATGTTATTTAATAGG AACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCTGAAAATACATGTACCAGTGGTAGTACATTATCGAGAGCTGCGC TAAATTATGCACGTGCCCGTGCACAAATGGAGAAGGAGTGTGGGAACGTACTTAAGGCTCTTGGCACACAGGTACACCCA AATATGCACACATTATCATAGGGTATTGTAGCTATGTTTTGTTTCCTGCCAATACTTGTGATTTTGTGCCAAAGTAATTT AGATTTTCCCCGGTATGCATGAGTCTCTCATACAACCACTTGTAATTGCATGCAAATCTGGCTTTATATATGTAATGCTC AGATTTCTCCATAGCTAAACTGTTTAAACTAACCTGAATGGGATGTACAGAATTATAGATATTATGGTTTCACAGGTGTA ACATTTGGATTTCTCCTAACTGAACTGTTGTAGTGAACCTGAATGGTATATAAACTATTTTAAATCTATTTGATCTGATG AAGAAGGAACATCTAGGCCAGGTCCAAGTCTATCCTTCAATCATTTTTACTAATTCATAATCGCGTTAATCTTTCTTCTC ACTGTATTTATATGCTGACTCATTGTTAACTTATCCAGTGTTTGCTTCCCATCTTTATTTTTGTGAGTGAACATTGAAGT TTTGGTTGATGCTTAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGTGCTCCACTGGAGGATGCTCGGCATCTTGCTC AACGTTATGACAGAATGAGACAGGATGCTGAAGCCCAGGTATTTGGAATTTCATTTTTCAGTTGTCACCAGCTATTTTCT TTTTCTTTTTATTTCTGTAAATGACGGAGTTAGTAAATAGCTCATCAATCTTTTTTTTTATCTATGCACTTTGTAATTAC TCTGTCTTTTAAACCTAGACAGGCTATTGAAGTTTCCAAACGCCAGGCGAAGGTAAGAGAATCACCCGGCAATGCTGAGA ATTCTATGAAGCTGGAAGCAGCTGAAGCAAAACTGCAAGACTTGAAGTCAAACATGTCTATATTGGGAAAGGAAGCAGCT GCGGCAATGGCTGCTGTTGAAGCACAGCAACAAAGGTTAACCCTCCAACGTCTTATAGCTATGGTATTGTGCTTTTACCA TATGATGCTGCAATTCTTCACTTTTGATGAAATCTTGGATCTATTACAAACTTAAATTCAGCATTCTATTTCTAATTATG AAGGTTGAAGCGGAGCGTGCTTATCATCAAAGAGTACTCCAAATACTTGATCATCTTGAGGGAGAGGTAAGTGATGCTCT CTCTTGGTCGTGTTTCCATTATATTCTCCCTGTAGTAATCAAATATGCCTTTTGACCTCGACGTAATTTTCTGTTGATAT CAACATATGTTTATGTGTATATTTAATGATAGATGATATCAGAACGACAACGTATTGAAGCCCCTCCTACACCTAGTGTC GATAACAGCATGCCACCGCCCCCATCATATGAAGACGTGAATGATGTCTTTGCTTCTCAAGCACATAATGGCTCAACAGA TAGTATGGGTTACTTCTTAGGGGAGGTTAGACTGTTTCCTGTATGAAGGTTACAGATATGATGCTGAAAAATAAGTGATT GCTTACTTTACTTTCTGCTACTCATCCAGGTTTTATTTCCCTACCATGCTGAATCTGAAGTTGAACTGAATTTATCAGCT GGGGATTATATTGTCATTCGAAAGGTTTATAACTCACTGATCTTGTCATTATAGCTTTTTTCGAGCCAAATTATGTCTTT TACTTGTTTTTCAAGAATTCTCTCCTTTTCTTTTTACTTGCTAGTGACATATAACTGCTTATCATATTTGTGTCAAGAGC TGATGAATTGAGCTTACCAATTAGCCCTGTACATATTGAAACAGATAATGAAGTTTTTTGATGGGGAGACAGAACTTTAA AATCTTGTTTATTTCAAATTCCTAACATGACTGTCATTTTGACAGGTTACAAACAATGGATGGGCTGAGGGTGAATGTAA AGGTAGAGCAGGCTGGTTTCCATTTGGTTACATTGAAAGAAGAGAGCGAGTCCTTGCAAGCAAGGTTGCTGAAGTGTTTT GAATTTTTCTGTAGGGTTGCTTGCTAGCCCCAGGGATTTTGTATGTGTTCATGTTTTGGTTTTTGTGCTGAAGTCTATGG ATAACGTGTTCTTAGCTTACAGCAAATTGGTTTGTGATATAGGTGATAACTTTTTCCTTGTGATTATCAATTGATATATG ATTCCCCTTTTGTTTATCACTGTTTCACCGCGTAGGAGCTGTTCATATCTTCATCAGACTTGCAGTATATGTGATAAATT GCTGTGATAAAACCCCATTGGATGAGTTTTTTTTAATCTATTATGATGAGCACTTGTGATCTATTCAGATAATCTGTTTA TTTTTTCCTTTGGTCAAGAAAATCATTAGTTTTTAGCGCTGATGGCATCACTCATTTCTTTTTCTTTCTCTGAGTGTAGT AGTTACATTCAGATTGGTTTTCCATAACATGGAATACTAGTTACACCAACTCAATATTTATAGGACTATCATCCCTCTTT TATCTTTATTCTAATAAATAGCAGGAAACTTAGTATCTAAGATTCTAAATCCATCCTCTCACCTCGCCTCATTTTAATTA CACCTCTGAAGACTTCAATGTTTTTGTAGCATATACTAGTGTCCCAATCGCCATGATCAATGGTAGAGAGAAATTCTCTC GACCAAAGAGAACTTAGAAAAAGGAAAAGAG
CDS sequence (LotjaGi1g1v0563900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCTATCAGAAAGCAAGCCTCCAAGCTTCGTGAACAGGTCGCTCGCCAACAGCAGGCTGTGCTGAAACAATTCGG GGCTGGAGGGTATGGAGGTTCGGATAATATGGTTACTGATGAGATAGAGCTTCAACAACATCAGAAACTTGAGAAGCTTT ACATATCAACGCGTGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGGTTATATTGTTACCGGATCCAAG CAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCTGAAAATACATGTACCAGTGGTAGTACATT ATCGAGAGCTGCGCTAAATTATGCACGTGCCCGTGCACAAATGGAGAAGGAGTGTGGGAACGTACTTAAGGCTCTTGGCA CACAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGTGCTCCACTGGAGGATGCTCGGCATCTTGCTCAACGTTATGAC AGAATGAGACAGGATGCTGAAGCCCAGGCTATTGAAGTTTCCAAACGCCAGGCGAAGGTAAGAGAATCACCCGGCAATGC TGAGAATTCTATGAAGCTGGAAGCAGCTGAAGCAAAACTGCAAGACTTGAAGTCAAACATGTCTATATTGGGAAAGGAAG CAGCTGCGGCAATGGCTGCTGTTGAAGCACAGCAACAAAGGTTAACCCTCCAACGTCTTATAGCTATGGTTGAAGCGGAG CGTGCTTATCATCAAAGAGTACTCCAAATACTTGATCATCTTGAGGGAGAGATGATATCAGAACGACAACGTATTGAAGC CCCTCCTACACCTAGTGTCGATAACAGCATGCCACCGCCCCCATCATATGAAGACGTGAATGATGTCTTTGCTTCTCAAG CACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGGGAGGTTTTATTTCCCTACCATGCTGAATCTGAAGTTGAA CTGAATTTATCAGCTGGGGATTATATTGTCATTCGAAAGGTTACAAACAATGGATGGGCTGAGGGTGAATGTAAAGGTAG AGCAGGCTGGTTTCCATTTGGTTACATTGAAAGAAGAGAGCGAGTCCTTGCAAGCAAGGTTGCTGAAGTGTTTTGA
Protein sequence (LotjaGi1g1v0563900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEIELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSK QVEIGTKLSEDSRKYGAENTCTSGSTLSRAALNYARARAQMEKECGNVLKALGTQVAEPLRAMVMGAPLEDARHLAQRYD RMRQDAEAQAIEVSKRQAKVRESPGNAENSMKLEAAEAKLQDLKSNMSILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE RAYHQRVLQILDHLEGEMISERQRIEAPPTPSVDNSMPPPPSYEDVNDVFASQAHNGSTDSMGYFLGEVLFPYHAESEVE LNLSAGDYIVIRKVTNNGWAEGECKGRAGWFPFGYIERRERVLASKVAEVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 371 | 368 | 2.2E-233 | – | |
| PANTHER | 4 | 371 | 368 | 2.2E-233 | – | |
| Gene3D | 44 | 271 | 228 | 7.4E-13 | ||
| SUPERFAMILY | 47 | 258 | 212 | 1.22E-23 | ||
| Coils | 149 | 169 | 21 | - | – | |
| Coils | 186 | 213 | 28 | - | – | |
| Coils | 220 | 240 | 21 | - | – | |
| SUPERFAMILY | 268 | 359 | 92 | 7.35E-16 | ||
| ProSiteProfiles | 302 | 361 | 60 | 18.993 | ||
| Gene3D | 302 | 361 | 60 | 2.4E-14 | – | |
| SMART | 305 | 360 | 56 | 1.7E-12 | ||
| Pfam | 309 | 357 | 49 | 5.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0563900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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