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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036028
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We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.184s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0563900.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|G7J7R7|G7J7R7_MEDTR Clathrin-binding protein; Found in the gene: LotjaGi1g1v0563900 LjG1.1_chr1 109692434 109698304 +
2 domain predictions
1 GO term
LotjaGi1g1v0563900.2
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|G7J7R7|G7J7R7_MEDTR Clathrin-binding protein; Found in the gene: LotjaGi1g1v0563900 LjG1.1_chr1 109694462 109697635 +
2 domain predictions
1 GO term
LotjaGi2g1v0345400.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|I1J846|I1J846_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0345400 LjG1.1_chr2 82242999 82247193 +
2 domain predictions
1 GO term
LotjaGi3g1v0513900.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 LjG1.1_chr3 93113171 93120398 -
2 domain predictions
1 GO term
LotjaGi3g1v0513900.2
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 LjG1.1_chr3 93113729 93118873 -
2 domain predictions
1 GO term
LotjaGi3g1v0513900.3
n.a. SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|A0A1J7HPY7|A0A1J7HPY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0513900 LjG1.1_chr3 93113729 93119113 -
2 domain predictions
1 GO term
LotjaGi4g1v0382800.1
n.a. SH3 domain-containing protein 1; TAIR: AT4G18060.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8L7W0|SH3P3_ARATH SH3 domain-containing protein 3; TrEMBL-Plants: tr|I3SJQ0|I3SJQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0382800 LjG1.1_chr4 76159304 76165020 -
2 domain predictions
1 GO term
LotjaGi4g1v0382800.2
n.a. SH3 domain-containing protein 1; TAIR: AT4G18060.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8L7W0|SH3P3_ARATH SH3 domain-containing protein 3; TrEMBL-Plants: tr|I3SJQ0|I3SJQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0382800 LjG1.1_chr4 76159722 76164474 -
2 domain predictions
1 GO term
LotjaGi4g1v0438800.1
n.a. SH3 domain protein; TAIR: AT2G07360.1 SH3 domain-containing protein; Swiss-Prot: sp|Q4P3H6|SLA1_USTMA Actin cytoskeleton-regulatory complex protein SLA1; TrEMBL-Plants: tr|I1K661|I1K661_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0438800 LjG1.1_chr4 81189642 81209090 +
2 domain predictions
1 GO term
LotjaGi4g1v0438800.2
n.a. SH3 domain protein; TAIR: AT2G07360.1 SH3 domain-containing protein; Swiss-Prot: sp|Q4P3H6|SLA1_USTMA Actin cytoskeleton-regulatory complex protein SLA1; TrEMBL-Plants: tr|I1K661|I1K661_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0438800 LjG1.1_chr4 81189784 81208172 +
2 domain predictions
1 GO term
LotjaGi4g1v0438800.3
n.a. SH3 domain protein; TAIR: AT2G07360.1 SH3 domain-containing protein; Swiss-Prot: sp|Q4P3H6|SLA1_USTMA Actin cytoskeleton-regulatory complex protein SLA1; TrEMBL-Plants: tr|I1K661|I1K661_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0438800 LjG1.1_chr4 81189784 81208172 +
2 domain predictions
1 GO term
LotjaGi4g1v0438800.4
n.a. SH3 domain protein; TAIR: AT2G07360.1 SH3 domain-containing protein; Swiss-Prot: sp|Q4P3H6|SLA1_USTMA Actin cytoskeleton-regulatory complex protein SLA1; TrEMBL-Plants: tr|I1K661|I1K661_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0438800 LjG1.1_chr4 81189784 81208172 +
2 domain predictions
1 GO term
LotjaGi4g1v0438800.5
n.a. SH3 domain protein; TAIR: AT2G07360.1 SH3 domain-containing protein; Swiss-Prot: sp|Q4P3H6|SLA1_USTMA Actin cytoskeleton-regulatory complex protein SLA1; TrEMBL-Plants: tr|I1K661|I1K661_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0438800 LjG1.1_chr4 81189784 81208172 +
2 domain predictions
1 GO term