Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0563900 |
| Transcript ID | LotjaGi1g1v0563900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|G7J7R7|G7J7R7_MEDTR Clathrin-binding protein; Found in the gene: LotjaGi1g1v0563900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109694462..109697635) extracted from Lotus japonicus Gifu genome v1.2.
GAACAAACATAAATAAGAAAAGCCACTGATTCTTTGCTTTAGAGGATGTCTTATCTTCTTCTCCCTAGCTGTACTTATGC TCTCATCTGTGTCATGAAGTTTCTTACGTTATTTATAAGACATTATTCAATTCGTTTCTTGCTCCTTTTTTACCTGTTCT CAAATGTTTCTTAATTTTGCTTGCTTCCTCTATTGAGGTGTTAATAACAATTATTGCGGTTTAGGCTGTGCTGAAACAAT TCGGGGCTGGAGGGTATGGAGGTTCGGATAATATGGTTACTGATGAGATAGAGCTTCAACAACATCAGAAACTTGAGAAG CTTTACATATCAACGCGTGCAGGAAAGGTTGCTTGGCTTCTTCTGTATAAATTCTCTAATTTTGTTTGTTTTATCTCAAC TTATACCCCACCTCCCCACCTGCTTGGCTGATAATGACATATATTGTTTTTCAGCATTATCAAAGGGATATTGTCCGTGG AGTAGAAGGTTATATTGTTACCGGATCCAAGCAAGTTGAAATAGGTCAGTAATGTTGGTTGTTGAACTATTCAAGAAACT TCCTTAGCATTTATTTTATAAAACTTAGCACAGGATGGGGCTTTGACATGTTTGTAAGTCAGTAAGAGAGAAGAAAAAAA AGGACGGTGGGCAGGGCTAGACAATGTGAGGCTAACAGAAATTATTTGTTTATGAGAGGAGAGATAGGAATCTGTGAGTC AGGAGGAAACAGTTGTGGGAGAGTGTAAGAGAATGAGAATGTACATGTGGCAGCAGGCTATTGGAGAGGAGAATTGTGCC ATGGTGTGAAAGGAAAGGTAGCTAGAATAAGGAGGGTTGGGAATAGTGGCAAGGAAGACAAGTATTTGGGAGTGAATTGG TGTCTTAGGACAGAGAATTGTACATGTATTAGCTGTGATTGTCCTTTCTTATTTCTGCATTTCATCTATTCCATTGTCTG TGTTTTCATTCGTTGAGCTGTAATTTTCCCTTGCAAAGAAGATTTTTTTCCTTGAGTTTGATCCTATTTTCTGTATTAAT ACCAGTTCCTTTTAGTATAGTTATTGAGTTTCTATACATGTTATTTAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAA TATGGTGCTGAAAATACATGTACCAGTGGTAGTACATTATCGAGAGCTGCGCTAAATTATGCACGTGCCCGTGCACAAAT GGAGAAGGAGTGTGGGAACGTACTTAAGGCTCTTGGCACACAGGTACACCCAAATATGCACACATTATCATAGGGTATTG TAGCTATGTTTTGTTTCCTGCCAATACTTGTGATTTTGTGCCAAAGTAATTTAGATTTTCCCCGGTATGCATGAGTCTCT CATACAACCACTTGTAATTGCATGCAAATCTGGCTTTATATATGTAATGCTCAGATTTCTCCATAGCTAAACTGTTTAAA CTAACCTGAATGGGATGTACAGAATTATAGATATTATGGTTTCACAGGTGTAACATTTGGATTTCTCCTAACTGAACTGT TGTAGTGAACCTGAATGGTATATAAACTATTTTAAATCTATTTGATCTGATGAAGAAGGAACATCTAGGCCAGGTCCAAG TCTATCCTTCAATCATTTTTACTAATTCATAATCGCGTTAATCTTTCTTCTCACTGTATTTATATGCTGACTCATTGTTA ACTTATCCAGTGTTTGCTTCCCATCTTTATTTTTGTGAGTGAACATTGAAGTTTTGGTTGATGCTTAGGTTGCAGAGCCC TTAAGAGCAATGGTGATGGGTGCTCCACTGGAGGATGCTCGGCATCTTGCTCAACGTTATGACAGAATGAGACAGGATGC TGAAGCCCAGGTATTTGGAATTTCATTTTTCAGTTGTCACCAGCTATTTTCTTTTTCTTTTTATTTCTGTAAATGACGGA GTTAGTAAATAGCTCATCAATCTTTTTTTTTATCTATGCACTTTGTAATTACTCTGTCTTTTAAACCTAGACAGGCTATT GAAGTTTCCAAACGCCAGGCGAAGGTAAGAGAATCACCCGGCAATGCTGAGAATTCTATGAAGCTGGAAGCAGCTGAAGC AAAACTGCAAGACTTGAAGTCAAACATGTCTATATTGGGAAAGGAAGCAGCTGCGGCAATGGCTGCTGTTGAAGCACAGC AACAAAGGTTAACCCTCCAACGTCTTATAGCTATGGTATTGTGCTTTTACCATATGATGCTGCAATTCTTCACTTTTGAT GAAATCTTGGATCTATTACAAACTTAAATTCAGCATTCTATTTCTAATTATGAAGGTTGAAGCGGAGCGTGCTTATCATC AAAGAGTACTCCAAATACTTGATCATCTTGAGGGAGAGGTAAGTGATGCTCTCTCTTGGTCGTGTTTCCATTATATTCTC CCTGTAGTAATCAAATATGCCTTTTGACCTCGACGTAATTTTCTGTTGATATCAACATATGTTTATGTGTATATTTAATG ATAGATGATATCAGAACGACAACGTATTGAAGCCCCTCCTACACCTAGTGTCGATAACAGCATGCCACCGCCCCCATCAT ATGAAGACGTGAATGATGTCTTTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGGGAGGTT AGACTGTTTCCTGTATGAAGGTTACAGATATGATGCTGAAAAATAAGTGATTGCTTACTTTACTTTCTGCTACTCATCCA GGTTTTATTTCCCTACCATGCTGAATCTGAAGTTGAACTGAATTTATCAGCTGGGGATTATATTGTCATTCGAAAGGTTT ATAACTCACTGATCTTGTCATTATAGCTTTTTTCGAGCCAAATTATGTCTTTTACTTGTTTTTCAAGAATTCTCTCCTTT TCTTTTTACTTGCTAGTGACATATAACTGCTTATCATATTTGTGTCAAGAGCTGATGAATTGAGCTTACCAATTAGCCCT GTACATATTGAAACAGATAATGAAGTTTTTTGATGGGGAGACAGAACTTTAAAATCTTGTTTATTTCAAATTCCTAACAT GACTGTCATTTTGACAGGTTACAAACAATGGATGGGCTGAGGGTGAATGTAAAGGTAGAGCAGGCTGGTTTCCATTTGGT TACATTGAAAGAAGAGAGCGAGTCCTTGCAAGCAAGGTTGCTGAAGTGTTTTGA
CDS sequence (LotjaGi1g1v0563900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTACTGATGAGATAGAGCTTCAACAACATCAGAAACTTGAGAAGCTTTACATATCAACGCGTGCAGGAAAGCATTA TCAAAGGGATATTGTCCGTGGAGTAGAAGGTTATATTGTTACCGGATCCAAGCAAGTTGAAATAGGAACAAAGTTGTCAG AAGATAGCAGGAAATATGGTGCTGAAAATACATGTACCAGTGGTAGTACATTATCGAGAGCTGCGCTAAATTATGCACGT GCCCGTGCACAAATGGAGAAGGAGTGTGGGAACGTACTTAAGGCTCTTGGCACACAGGTTGCAGAGCCCTTAAGAGCAAT GGTGATGGGTGCTCCACTGGAGGATGCTCGGCATCTTGCTCAACGTTATGACAGAATGAGACAGGATGCTGAAGCCCAGG CTATTGAAGTTTCCAAACGCCAGGCGAAGGTAAGAGAATCACCCGGCAATGCTGAGAATTCTATGAAGCTGGAAGCAGCT GAAGCAAAACTGCAAGACTTGAAGTCAAACATGTCTATATTGGGAAAGGAAGCAGCTGCGGCAATGGCTGCTGTTGAAGC ACAGCAACAAAGGTTAACCCTCCAACGTCTTATAGCTATGGTTGAAGCGGAGCGTGCTTATCATCAAAGAGTACTCCAAA TACTTGATCATCTTGAGGGAGAGATGATATCAGAACGACAACGTATTGAAGCCCCTCCTACACCTAGTGTCGATAACAGC ATGCCACCGCCCCCATCATATGAAGACGTGAATGATGTCTTTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGG TTACTTCTTAGGGGAGGTTTTATTTCCCTACCATGCTGAATCTGAAGTTGAACTGAATTTATCAGCTGGGGATTATATTG TCATTCGAAAGGTTACAAACAATGGATGGGCTGAGGGTGAATGTAAAGGTAGAGCAGGCTGGTTTCCATTTGGTTACATT GAAAGAAGAGAGCGAGTCCTTGCAAGCAAGGTTGCTGAAGTGTTTTGA
Protein sequence (LotjaGi1g1v0563900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTDEIELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSRAALNYAR ARAQMEKECGNVLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKVRESPGNAENSMKLEAA EAKLQDLKSNMSILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDHLEGEMISERQRIEAPPTPSVDNS MPPPPSYEDVNDVFASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSAGDYIVIRKVTNNGWAEGECKGRAGWFPFGYI ERRERVLASKVAEVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 335 | 335 | 8.1E-211 | – | |
| PANTHER | 1 | 335 | 335 | 8.1E-211 | – | |
| Gene3D | 9 | 235 | 227 | 5.4E-13 | ||
| SUPERFAMILY | 11 | 222 | 212 | 9.24E-24 | ||
| Coils | 113 | 133 | 21 | - | – | |
| Coils | 150 | 177 | 28 | - | – | |
| Coils | 184 | 204 | 21 | - | – | |
| SUPERFAMILY | 232 | 323 | 92 | 6.04E-16 | ||
| Gene3D | 265 | 325 | 61 | 2.0E-14 | – | |
| ProSiteProfiles | 266 | 325 | 60 | 18.993 | ||
| SMART | 269 | 324 | 56 | 1.7E-12 | ||
| Pfam | 273 | 321 | 49 | 4.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0563900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…