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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0564800 |
| Transcript ID | LotjaGi1g1v0564800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065; TrEMBL-Plants: tr|G7J7P9|G7J7P9_MEDTR Organelle transcript processing protein, putative; Found in the gene: LotjaGi1g1v0564800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109807465..109810970) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCCACGACCTAAAAATTCTGGATCCGTCAGTGAGTGTAACTGATGGGTTGAGTATGGAGGTGACAACCATGTCTGAG GCTCTGCAACTTCATGCCCAAATTCTGAAACTAGGTACTTCAAACAACGACGCTCCACGCAACTTCTCCAAGCTCTTCAC CTTCGCCGCTCTCTCACCCTCCGGCGACCTCAACTATGCTCGTCTTCTTCTCACCTCCAATCCCGCTTTAAACTCTTACT ACTACAACACCATGCTCCGAGCTTATTCTCTAAGTTCCGACCCGACCCATCATTTCCACGCTCTTTCTCTCTTCATCTTC ATGCTCCGACGACCCACCCACGGTGTTCCCGCACCGGACAACTTCACTTTTCCCTTCGTGCTCAAATGCTGTGCTCGTTT GAAGCTTGCCCGTCAAGGAAAACAGCTCCATGGTTTCATTACTAAGATGGGTTTTGGCTCTGATTGCTATATCATGAATG CGCTGATCCACATGTACTCTGTGTTTGGTGATTTGGGTGTTGCGCGTGAACTGTTTGATAGAATGCCTGATAGAGATGTG GTTTCTTGGACGTCGTTGATTGATGGGCTTGTTGATCATGATCGCCCTGTCGAGGCAATTGAGCTGTTTGGGAGAATGTT GGAAGCGGGAGTTGAGGTGAATGATGCTACGGTGGTGTCTGTTTTGAGAGCGTGTGCGGACTCGGGAGCATTGAGCATGG GGAGGAAAGTGCATGGGATTGTGAAGGAAAAGAAGAGAATTGAATGTAAGTGTAATGTTAGCACTGCGCTTATTGATATG TATGCGAAAAGTGGGTGTATAGAGAGTGCTAAGAAGGTATTTGATGGTGTCGTGGACAAAGATGTTTATGTTTGGACTGC AATGATTTCTGGCCTTGCTAGCCACGGGCTATGCAAGGAAGCTATTGACTTGTTTCTTGAAATGGAAACATGCAATGTGA AACCTGATGAGAGGACTATGACAGCAGTTTTATCAGCATGTAGGAATGCAGACTTGGTTCGTGAAGCTTACATGGTTTTC AGTGATATGAAGAAGCGTTACGGTATAGAACCTACAATTCAGCATTTTGGTTGTGTAGTGGACCTTCTTGCTAGAGCAGG GTGTTTGAAGGAAGCTGAAGATTTCATGAATGCAATGCCTATGAAACCCGATGCGGTTCTTTGGAGGACCCTGATATGGG CCTGCAAAGTTCATGAGGATACTGAAAGAGCTGAGCGTTTGATGAAGCAGCACCTTGAGATGGGTGTGGATGATAGTGGA AGTTACATACTAGCTAGTAATGTCTATGCTTCGGTAGGGAAGTGGTCTAACAAGGCAGAGGTTAGAGAGTTGATGAATAA AAAGGGACTCATAAAGCCACCAGGGTCTAGTAGGATTGAAGTTGATGGGGCTTTACATGAGTTTGTGATGGGAGATTATA ATCACCCTGAAGCAGATAACATATTTGTCAAATTGGATGAGATGGTAGATAAACTTAAAAAAGAAGGGTATAATCCGAAA TTATCAGAGGTCTTACTCGAGATAGATGATGAGGAAAAAGCCACCCAGTTGCTTCACCATAGCGAGAAGCTAGCTCTTGC TTATGGACTGATAAGGACAAGTCAGGGGTCCAAAATCAGGATTGTCAAGAACCTAAGGTCTTGCGAAGACTGTCACGAGT TTATGAAACTAATCTCTAAGATATACCAAAGAGATATCATTGTGAGAGACAGAATTCGTTTCCATCATTTCAAAAATGGA GATTGCTCTTGTAAGGATTATTGGTAGCACGAGAATGGTAGTTGGATGGAATGTTGTAACATGTAAAAGGAAAACTTAAA AGAGAAATAACTATGCAGAGTCCCATGAGTTGCTTGCTTTGATGACTAATTCGGCCATGGACAAATGCAAATGCCAAGGG ATATTACTGGCCGTATGGAATGATTGCAGGTTTTAAACATAACTCATGAACTATAGCCCTGTTCTTTTTTCGGTCTAGTA CAAGTATCTTTTACGGGAGGCAATCCCATTCCAGCCGAGAACACCCACATTCTAGTGGGGCTAGCTCTCCTAGTGGGAGT TTTTTCTTCTATGACCCTGCTCTGATCAAATGTCAATGAAGAAAAGTGTGTTTATGGATAAACTCACTATGTTGGATAAT GAGCAATGCATTCGAGATGGGCTACACTTTGATCCATAGTCCATGGAAAATGTACATATTAAGAGTATATATTAGTCATA TCGGAGGGTTGGAGAGGCAGAACAGCTTTCATTCTATGCAATTTCTTTGGTCGGATAATGTTAGAGATTTGCAGGTATGT TATGGACTTGCGTTCATGTAGTTTTTTTTTTTTTGATAAGCTGCGTTCATGTATGTTACATTCTTTTGCTGGCTTAAAGA TGTTGATAACAGATTAATATGTATCATTAAGCTATAAGTTGATATCATAGATTAAAACCTTATTGACATCATTGTAAAAT ACAATAATCTGCACCGATTAATTTATATAGTCATTTAATCATGTGTTGCCAAATCATTGAGAACTTTGACTATCATGATT ATTATTTGAAAGGTTAACTATTGTAAATTTGTAATGGCTTGCCTACACATGATTAAGTAATTTAAGAACTTCAAATTAAG AATTATACTCTAATGATTATTGTGCTCTTGTTTTGTTCCTGCTGAGACGTGTATTCATAAAAGATAAGAATAAGAATACA AACATTGGATGAATGCTTTACAATTGTTTTGTTATAAGCCGTCTGATGAGTTTGAAATTAATGCATGTTACAAACTATCA AAATCATTTTGCCAGTTGCCACTAACCTTTCTTATTAGCTCTCATGATTGGTTTTGAAAATCAATGATTGAACCGAATTT ATATGGCCGGTGGAGGAGATTCACCCTTTTTGCTACTTCATTTTATTTTTTAACAGGTGTTCTCGGCAGGAAGCAATCTC AATCGAGTTAAGAACATGCACATCTTGGTTGGCTAGCTCTCCATACACAAGACTCAAGCGATATTTGCTTAAAGAGAATG TAGGCTACCACTTGAACCAACCACAACGTTCCTCAAAGACAGAATGGTGCATATCACAGTGACGTGGTCAGCCGGTGTAT TGATATAGGTCAGTCTACATGAAGGAACAGTTTTACCAGTTAATTTTTCTATAAAACTGCAAGCCCAAAGTGAAATGGAT ATCCGAATATACTGTCTCCAAGTCCAATTGAGCAATGGCCTTTTACCCCTCTAATGATGTAGTGTTAATTTGGTGGTCAC GTATCACTTAAACACCATGTTATACATGCAATTTATATATTTTTTATCGTTTAACCCATCTTTAATTAAGAGCTTAACCT ATTCTAAAGCAGTACTCTTGCTAAATGACATCACCGCAACCTACTTCAATCAGAAACCAATTAAAAAACTATATGCTCCT GCTAAATATGCTAAGAATTAGGACAACTTTTCACCGAAGCATGTGAACCATTCAATAGTGTGGCTC
CDS sequence (LotjaGi1g1v0564800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTGACAACCATGTCTGAGGCTCTGCAACTTCATGCCCAAATTCTGAAACTAGGTACTTCAAACAACGACGCTCC ACGCAACTTCTCCAAGCTCTTCACCTTCGCCGCTCTCTCACCCTCCGGCGACCTCAACTATGCTCGTCTTCTTCTCACCT CCAATCCCGCTTTAAACTCTTACTACTACAACACCATGCTCCGAGCTTATTCTCTAAGTTCCGACCCGACCCATCATTTC CACGCTCTTTCTCTCTTCATCTTCATGCTCCGACGACCCACCCACGGTGTTCCCGCACCGGACAACTTCACTTTTCCCTT CGTGCTCAAATGCTGTGCTCGTTTGAAGCTTGCCCGTCAAGGAAAACAGCTCCATGGTTTCATTACTAAGATGGGTTTTG GCTCTGATTGCTATATCATGAATGCGCTGATCCACATGTACTCTGTGTTTGGTGATTTGGGTGTTGCGCGTGAACTGTTT GATAGAATGCCTGATAGAGATGTGGTTTCTTGGACGTCGTTGATTGATGGGCTTGTTGATCATGATCGCCCTGTCGAGGC AATTGAGCTGTTTGGGAGAATGTTGGAAGCGGGAGTTGAGGTGAATGATGCTACGGTGGTGTCTGTTTTGAGAGCGTGTG CGGACTCGGGAGCATTGAGCATGGGGAGGAAAGTGCATGGGATTGTGAAGGAAAAGAAGAGAATTGAATGTAAGTGTAAT GTTAGCACTGCGCTTATTGATATGTATGCGAAAAGTGGGTGTATAGAGAGTGCTAAGAAGGTATTTGATGGTGTCGTGGA CAAAGATGTTTATGTTTGGACTGCAATGATTTCTGGCCTTGCTAGCCACGGGCTATGCAAGGAAGCTATTGACTTGTTTC TTGAAATGGAAACATGCAATGTGAAACCTGATGAGAGGACTATGACAGCAGTTTTATCAGCATGTAGGAATGCAGACTTG GTTCGTGAAGCTTACATGGTTTTCAGTGATATGAAGAAGCGTTACGGTATAGAACCTACAATTCAGCATTTTGGTTGTGT AGTGGACCTTCTTGCTAGAGCAGGGTGTTTGAAGGAAGCTGAAGATTTCATGAATGCAATGCCTATGAAACCCGATGCGG TTCTTTGGAGGACCCTGATATGGGCCTGCAAAGTTCATGAGGATACTGAAAGAGCTGAGCGTTTGATGAAGCAGCACCTT GAGATGGGTGTGGATGATAGTGGAAGTTACATACTAGCTAGTAATGTCTATGCTTCGGTAGGGAAGTGGTCTAACAAGGC AGAGGTTAGAGAGTTGATGAATAAAAAGGGACTCATAAAGCCACCAGGGTCTAGTAGGATTGAAGTTGATGGGGCTTTAC ATGAGTTTGTGATGGGAGATTATAATCACCCTGAAGCAGATAACATATTTGTCAAATTGGATGAGATGGTAGATAAACTT AAAAAAGAAGGGTATAATCCGAAATTATCAGAGGTCTTACTCGAGATAGATGATGAGGAAAAAGCCACCCAGTTGCTTCA CCATAGCGAGAAGCTAGCTCTTGCTTATGGACTGATAAGGACAAGTCAGGGGTCCAAAATCAGGATTGTCAAGAACCTAA GGTCTTGCGAAGACTGTCACGAGTTTATGAAACTAATCTCTAAGATATACCAAAGAGATATCATTGTGAGAGACAGAATT CGTTTCCATCATTTCAAAAATGGAGATTGCTCTTGTAAGGATTATTGGTAG
Protein sequence (LotjaGi1g1v0564800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVTTMSEALQLHAQILKLGTSNNDAPRNFSKLFTFAALSPSGDLNYARLLLTSNPALNSYYYNTMLRAYSLSSDPTHHF HALSLFIFMLRRPTHGVPAPDNFTFPFVLKCCARLKLARQGKQLHGFITKMGFGSDCYIMNALIHMYSVFGDLGVARELF DRMPDRDVVSWTSLIDGLVDHDRPVEAIELFGRMLEAGVEVNDATVVSVLRACADSGALSMGRKVHGIVKEKKRIECKCN VSTALIDMYAKSGCIESAKKVFDGVVDKDVYVWTAMISGLASHGLCKEAIDLFLEMETCNVKPDERTMTAVLSACRNADL VREAYMVFSDMKKRYGIEPTIQHFGCVVDLLARAGCLKEAEDFMNAMPMKPDAVLWRTLIWACKVHEDTERAERLMKQHL EMGVDDSGSYILASNVYASVGKWSNKAEVRELMNKKGLIKPPGSSRIEVDGALHEFVMGDYNHPEADNIFVKLDEMVDKL KKEGYNPKLSEVLLEIDDEEKATQLLHHSEKLALAYGLIRTSQGSKIRIVKNLRSCEDCHEFMKLISKIYQRDIIVRDRI RFHHFKNGDCSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 54 | 226 | 173 | 1.3E-83 | – | |
| ProSiteProfiles | 59 | 92 | 34 | 6.204 | ||
| Gene3D | 77 | 242 | 166 | 3.2E-30 | ||
| ProSiteProfiles | 101 | 135 | 35 | 6.336 | ||
| ProSiteProfiles | 136 | 166 | 31 | 8.188 | ||
| Pfam | 167 | 214 | 48 | 1.9E-9 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.312 | ||
| TIGRFAM | 169 | 202 | 34 | 4.8E-7 | ||
| ProSiteProfiles | 202 | 232 | 31 | 5.382 | ||
| PANTHER | 221 | 434 | 214 | 1.3E-83 | – | |
| ProSiteProfiles | 238 | 268 | 31 | 6.336 | ||
| Gene3D | 243 | 448 | 206 | 1.2E-39 | ||
| Pfam | 243 | 267 | 25 | 0.0074 | ||
| Pfam | 268 | 315 | 48 | 5.4E-11 | ||
| ProSiteProfiles | 269 | 303 | 35 | 11.466 | ||
| TIGRFAM | 271 | 305 | 35 | 4.8E-7 | ||
| ProSiteProfiles | 304 | 339 | 36 | 8.276 | ||
| TIGRFAM | 307 | 340 | 34 | 4.3E-4 | ||
| ProSiteProfiles | 340 | 370 | 31 | 6.248 | ||
| Pfam | 344 | 368 | 25 | 0.86 | ||
| ProSiteProfiles | 372 | 406 | 35 | 7.3 | ||
| Pfam | 442 | 566 | 125 | 1.3E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0564800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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