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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0566300 |
| Transcript ID | LotjaGi1g1v0566300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rer1 family protein; TAIR: AT4G39220.1 Rer1 family protein; Swiss-Prot: sp|O48670|RER1A_ARATH Protein RER1A; TrEMBL-Plants: tr|A0A151TGB6|A0A151TGB6_CAJCA Protein RER1B; Found in the gene: LotjaGi1g1v0566300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109964043..109968054) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAAAAGTTAGCAAGAAAGGTAGGTTATAAACCAACCGGGTGATCGCGGCATTAAGCAGCAATTCAGGCCAACACC ACCTTCCTCATGCGTTTCAAGTCTTCACCATCAACCTAACTCGGTAGCACTGACTCGCTCACCCACTCACCAAATTGAAT TAGGGTTTTATTCCATTTCCTTCTTTCTTCTCCTCTCGATTAGGGTTTCTTCTCAGTTCTCACTCACCAATCTTGAAACA AATTCAATTGAATTGCAGATCTCATCGAAGATTCGATTTCAATGGAGGGAGGAAGCGCCTCATCACCCGTGACCCAGTAC TGGCAGCAATATTCGATGCTCTTCCAGCACTATCTTGACAAATCCACTCCCCACGCTGCTTACAGATGGATTGGGACTGC GATCCTCGCGTCAATCTACATTCTGCGTGTGTTTTATCTGCAGGGGTTTTACATTGTCTCTTACGGCCTCGGAATCTACC TCCTCAATCTCTTGATCGGGTTTCTTTCACCTCTCGTTGATCCTCAGCTCGAACCTTCTGATTCCGCTGTGCTCCCTACC AAGGGCTCTGATGAGTTCAAACCCTTCATTCGCAGGCTTCCTGAGTTTAAGTTCTGGTTCGTAATTTCAACACTCTTTCT TTCTTCAATTTTGTGCTATTCATTCATTTTCCTTTGTATTTGGCCTGTAAAATTTGCAATTGTTCAACTTTCCTGAACTG AAAGAGGTCGGTACTTGGTAAACTGGTAAAGAGGGTGAAAATTTAACACACTAAGCGAAATCAACAATGAAAATGGGTGT GTTTCGATGAATAGCGTAATTAAGCAATAAGCTTAAAATTTTATTGAAATAAGTTCAAAATAACTTAATGGTAGGCATAA GCGCTTATTCATAAGCTAATCTGATAAGCTTATGAAAATGAACTCAAAGTAGGTTATAGGTAGGTGTAAGTGCTTATTCA TAAGCTAATGTGAGTAGCTTATGAAAATAAGCTCAAAGAAACTTATACGTAGGTAATAAACTGTTTTCATTAACTTACCA AAATATTTGCATAATTATTTATAGCATAATCGTTCACGAAAATATCTAGATAGCTAGGTGGGCCGGTCATACCATTCTAT CGAGCTAGTAGGTTATTCAGTTTGTTTTGACATTTGGCTGTTCATTGTTTATTTAGGGGACGATTTGGGATTTCTTCCTC GTCGGAATAGTTCATCACTGTTATTATGAGATCGTTGTTGCGTTAAGCTTGGACCTAATCCAAGGAACCCATTTGATTCC TTCCCTATTTAGGGTGATCATTCGATCATTTATGGCGGGATAGAATTCCGGCGAGATTGAGGAGGGCAGGGATTCGGCTA CCGAGTGATTGGTCGGCCGAACAAGTCGAAATATCCGAACGGTACACGCCCTTAGCCGTGATTGTGCGAAATGAATTAGG GTCCTCCTTTATTCCATATACATGGTCGGGCGGTAAACAATGAGGGGATTAAAGAATTAATGTATTTCTTTAATTGTTTG GTCGGCCACTTGTAATTGGGCACATTATCAACGGGATATGATTGGGGCCGACAAAGGCGAAAATGTAGACCGGTACAATA TGTTCAAATAAGTTCTTCCAAATGCGGCATCATTTGAGTAGGTAGTATACGAATTTTAAAGAATTGAGCTCAAATAAAAT AAAAAACAGCATTTACATATCATTCTATTAAGTTCTTCATTCATGTTGCTTTGTATTTGGTCTGTAAATTTTGTAACTTC ATTGTGATATTATAACTGACTGCAGGTATTCTTTCACCAAGGCTTGCTGCGTAGGGTTTGTGATGACCTTCTTTTCCGTA TTTGATGTTCCTGTCTTCTGGCCTATATTACTCTGTTACTGGGCTGTTCTCTTTGTCCTTACCATGAGGCGCCAGATTGC ACACATGATCAAATACAAGTATATCCCATTCAACATCGGAAAGCAGGTTCAGTTTCTCATGCTTGACTAATGTTGCTTTT CCATCATTTATTTTCCTTGTGGACCTGTCTTTTTGTGTAACTGAGTTTTGTATCCTCTCTGCCTGAAATGTAATGTTTGA TTTGTTATAATATTTTACAGAAGTATGGCAGTAACAAATCTTCTGCAAGTCGTAGGGGCTCTAGAGCAGAGTAAACCTTG GATGTGTTATGATTCAAAGGGCACTAAATTTACTGGATGAAAACCAAGGTAGGTTTTGGGAACATTCAGGGTAGTTAATT TTTACCCTTTTTCTGAAGGAAATTGTATTCAGAGTTTTATGGATGTTGGTATGAAGTTGCCAAAAATCTTGGTTTTCAAT TGTTTTATTATATGGCCTGGAGGCATGCTAATACTGATAGTGAAATTCATTGTTGATACACATCCGTATTTAATTTTGGA TTGCCTTGTAAATCTCTGCTTGTATTGAGTTTTGGATTTTCATGTAAATCTCTGTTTGTACTGTGAACTTTTGGTGCTGC AATCTTTCCGCGCCTCGCTCCTTATACTTCAATATTAGGCCAAAGCTCGTCTATCGTTTTCTTTTCTGTTCCTTTTTACT TTATACTAAATATTATATAGGAGCCAGATTTGGTGCAGTTAACACAGTCAGCTAATTGGAGTTGTTGGGTGAAGATAGAT GGCCCCTACTTCAATTTTTACAAATCAGATTCAAAGCATGGATTCGAAATCTGAGTTGTCCCATCTTCATCCAACAATTT TGATCAGCTGACTGCGCCAGGGAGATTGAGATTAGATAGGGTCACTCTTGGTGTATATTGCCTCTCAAAGTACCACAAAT GTTGAGGCCATTGCTCATTGGAGATCTATATGCTTTGAAGTTGTTTAAACATTGTCCATTAATACTGTTGCAAAGCTCAG CGAGAAAACGTACAAGAGGCAAGACGCCGTTACCCTCCCTCTCAAGGGGGACTTCTCCCTCACACTAGGAACTTCTCCCC TTCACAAGTGAGAGCTTTGCTCTTTATCCTTTTAGTAAGATTTTTCTACTTTTCGTTCTAAAGCTAGACATTTTGCTTAT TATTGTCACAACTTCCCCCTTCATCTGAAATCAATCCATGTCATTAAAGGTAAAACCAAGACTGAATGGCTACCGAAATG AGATTTTCAGAAAGTGACTCCTTGATTGGAACTAAAGAAAGTGACAGTTTGAGGAATTTCATGAAGGACACTCTATGAAC ATTGGTTTAACCTATAGATACATATGATATAAATTCAATGCTTTAAATAGGCCACTTGCTAAACCATACAAGTAGAACTG ACCACTAAAGAAAGTAAAACAATAAAACAGATAAATAAATATATATTACTAACGACATCGTCGTATGGAACACAGGACCA GATCTGTGCCTTTGAACCAGTGATGCTGGGCACGACGTCGGGCACGGCGTTTTCGTATGAAACATAGGACAAGATCTCTG CCTTATTCCCCCGACGTCTTCGTATGAAACATAGGACAAGATCTCTGCCTTATTCCCAGTGCGGTGAGCGATGCGGGACA CGACATCAGAGGGTTCAACATAGCCAGTAACGGTGAGCTTGTTTGCCTCGCGCTCAATCTCAACGGAGTTTACCCCTTCC ATACCCTTGACTGCCTTCCTGACCTTCTTCACACATGCCTCGCAGCAGTCCATTCTCACTTTCACCTCCACCGTCTGCAT CACTCACAAAATTAATACACATGACATGAGATGTAATGTAATCACTAGTTTCTAGCAAGTTCAATATTTTCCAACGTACC TGCAATTGCTTTTTGGAACTTCCGCTGGAGCAGTCAATGAGGTCAGAGTTGTGACTGGAAGCACCCATTTTTGTGAATCT CAGACTCAGATTTGATGAAACCGTGAGAGTTAGAGATTCTAATTCTATGCTGCTTGATTTGCTTTGGTTAGTTGGTTTAA TTGGTTTGGCCAATTTTATAAGCATGCATGCAGCAGAGTGTGTCCAAGCTCGCTCTAGTGAACTGTGTTGTGTGTGATGC TTGGTTACAGAA
CDS sequence (LotjaGi1g1v0566300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGAGGAAGCGCCTCATCACCCGTGACCCAGTACTGGCAGCAATATTCGATGCTCTTCCAGCACTATCTTGACAA ATCCACTCCCCACGCTGCTTACAGATGGATTGGGACTGCGATCCTCGCGTCAATCTACATTCTGCGTGTGTTTTATCTGC AGGGGTTTTACATTGTCTCTTACGGCCTCGGAATCTACCTCCTCAATCTCTTGATCGGGTTTCTTTCACCTCTCGTTGAT CCTCAGCTCGAACCTTCTGATTCCGCTGTGCTCCCTACCAAGGGCTCTGATGAGTTCAAACCCTTCATTCGCAGGCTTCC TGAGTTTAAGTTCTGGTATTCTTTCACCAAGGCTTGCTGCGTAGGGTTTGTGATGACCTTCTTTTCCGTATTTGATGTTC CTGTCTTCTGGCCTATATTACTCTGTTACTGGGCTGTTCTCTTTGTCCTTACCATGAGGCGCCAGATTGCACACATGATC AAATACAAGTATATCCCATTCAACATCGGAAAGCAGAAGTATGGCAGTAACAAATCTTCTGCAAGTCGTAGGGGCTCTAG AGCAGAGTAA
Protein sequence (LotjaGi1g1v0566300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGGSASSPVTQYWQQYSMLFQHYLDKSTPHAAYRWIGTAILASIYILRVFYLQGFYIVSYGLGIYLLNLLIGFLSPLVD PQLEPSDSAVLPTKGSDEFKPFIRRLPEFKFWYSFTKACCVGFVMTFFSVFDVPVFWPILLCYWAVLFVLTMRRQIAHMI KYKYIPFNIGKQKYGSNKSSASRRGSRAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 185 | 185 | 2.0E-84 | ||
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 2 | 182 | 181 | 7.7E-131 | ||
| Pfam | 14 | 175 | 162 | 5.9E-73 | ||
| TMHMM | 33 | 52 | 20 | - | – | |
| Phobius | 33 | 52 | 20 | - | – | |
| Phobius | 53 | 57 | 5 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 58 | 79 | 22 | - | – | |
| Phobius | 80 | 110 | 31 | - | – | |
| Phobius | 111 | 129 | 19 | - | – | |
| Phobius | 130 | 134 | 5 | - | – | |
| TMHMM | 133 | 152 | 20 | - | – | |
| Phobius | 135 | 152 | 18 | - | – | |
| Phobius | 153 | 189 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0566300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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