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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0567500 |
| Transcript ID | LotjaGi1g1v0567500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G76390.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43; TrEMBL-Plants: tr|I1K7B6|I1K7B6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0567500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110078591..110082467) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCGGATGATAGCTTTCATTTTGAGAGGTTGCACAT TGAGCCTATTTACGACGCCTTTGTGTGTCCGCTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGACAGA CTTATGAACGTGAAGCAATTGAAAAATGGTTCAGGGAATGCAAGGAGAGTGGGCGGAAACTGGTTTGCCCTTTGACCCTG CACGAATTAAAAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGATTGCCAGGAATGAAGC TGCACAGCTGGATATGGCTCGCCGTTCATTGAATACGGGGAGTCCGGAAATTGAAACTCTCCAGGCATTAAAGTATGTCC AGCACGTCTGTCAAAGAAGTCGGTCAAATAAGCACATGGTCCGCAGTGCAGGGCTTGTACCAATGATTGTTGACATGCTG AAGAGTAGCAGCCGTAAGATTCGTTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTAGAGGAAGATGATGAGAATAAGGT TGTCACAGGTTTGCTGGTTATCATTTTATTTTCTTTCTAGTTTTTTGGTATCACCAACGTGCCTTTGGAGACTAATGCTA ACATCTTCTTTTTGCTTCCAAAGGAAATATTGGCCGAAGGGGACACTGTTCGTACGGTAGTTAAATTCCTTTCTCATGAG CTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTC AATCAATGGATCTATTCTTATATTGGTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCCACTGTTCAGAAGGCTGATA AAACATTAGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTGACC CATCTTCTTGAAGGTACTAACACTAATCTGTAATTAATCTCACAACATACTTGTGTTGTGTGGATAATTAGCTCACCATG CTATGTTAGTTCTCATCAGAGCATAATTTGCTAGGCCAGCCATATTACACCTGTATTTTTGTAAAAAATGGTGTGAACAC GTTTTGTTTTTGGAATTATTTAAAGGATTAAGACAAAATTATATTTCTTGTATGAATATTTCAAGGATCACGTGAAATGA ATAATACCTATGTAATATAAAAGTGTTTTAAAGAAGCTTAAAATTGCTATTATCTGTGTGCTTATTCTTTATTCTTCTTT TACAGCTGATTGTGGAATATCTTCTGATTGGAAAATAGCTTCTTAGAAAATATTTCCTAGAAGAAAATAGTTTCAGTTGA AAACTTTTGTATTAAAAGCGATGCATCATCTTGTAGTGTTTGATTTGGTCTAGAAAATCCCTCCCACCTTTAAAAATTGG AAATCAGTTTTCTCTCTTATAGGGTTTTAACAGTTGGTTGGAATAATTTTTTCAAATGACTGTCATACAAAATAGATCAA AATGTTTCCTTATTCCAAATGATAGATGCTACAAGCAATTAGAAAAGATGCGATTACCAAAAATTAGAAAAGATATGGAT TAATTGCATTTTTAGTCCTTCTAGTATATAGCTTATGTGCAGTTTTAGCCCCTAATTATCTTGAGCAAATCAAGCCCCTC AATTTCTTTAAATTAAGCAAATTTGATGTTGCTGTCAATTTTCTACTACCAGAATTCTAAATTCTCAACTTTATATGTTA ATATTTTGGGAGGTCGATGATGAATTTGGGGTATGAAACAAAACAACTTTGAACATTTGGAAGCCAGAAATTTAGTAAAC TTTTGAGAAAATTTGAAGGACTTTGTAGGTTATGAAGTTAGGGTTTGACACGAGGGAAAAATTGAGATTTGTTAATTTTT TTTAGGTGAAATTTGATATTTTGAATGGGAAGTTTTAAGCCGAATGAAGTTTAAATCGATTTAAGTTGTAAATTTTTTTT AGGATTTAGGAAATGATAATTTGAGAGTTTTTAAGTAGAATGAAAGTGATGGTTAAACTTAAATTGTAATGATCAAAAAT TGAGGGATTAAATTCGAGAAAAAAATTATTGGAAAACCAAAATTGCACAGTAGCCTAGGTGAATAAATGAATGTAACCCT AGATGAATTTTCATTCTGGAGGGAATTCATGGGTGCTCCATTTAGTTTTGATTAATTTATGAACATTGTCATTTGCTTGT AGAACTCCTAATTCATATGCAGACGTTAAAACATAATCTAGTTTTTCGTTAAAATGTTTGCAGGTTCACCAGAAACTAAA CTCTCCATGGCTGGATACCTTGGTGATCTCGTTTTGAACAACGATGTCAAAGTCTTTGTTGCTAAAACTGTAGGTTCATC TCTAATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATGTGAGC CAAGCGCAAAGGTTTTAATAGAAGCCGGCATCCTTTCCCCTCTTGTCAAGGACCTGTTTGCAGTGGGTCATAATCAGCTT CCAACACGCTTAAAGGAGGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCGGGTGAAGACTTTGATTCCATTCCATT TGGAACTGATGACCAAACTCTGGTCTCAGAGGATATAGTTCATAATCTCCTCCATCTTATAAGCAACACTGGTCCAGCAA TCGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACCAGTTCTCCAACTACAGTCGTGGGTGTTGTTGCTGCAATCAAA AGCTCTGGTGCCACTATCAGTCTAGTTCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCTTAAAACTTCT TCAGAATTTGTCACCCCACATGGGTCAGGAATTAGCTGATGCACTACGTGGCTCAGTTGGACAGCTTGGCACTCTAGTTA AAGTCATATCAGAAAATACAGGAATCACTGAGGAGCAGGCAGCGGCTGTTGGCCTTTTAGCAGATCTTCCCGAGAGAGAT TTGGGTCTCACGAGACAGCTACTGGACGAAGATGCCTTTTTGATGGTCATATCTAGGGTGATTGCCATCAGGCAGGGAGA GATCAGAGGCAGTCGCTTCCTGACACCGTTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGAGTTACATATGTCTTGGCTG ATGAGCCAGATGCCGTTGCACTTTGCCGCAATCACAATCTCGCTGCCCTGTTTATCGAACAGCTTCAAGCCAATGGGCTT GATAATGTTCAGATGGTTTCTGCTACAGCTTTAGAGAATTTATCGCAAGAATCAAAAAATTTAACCAGAATGCCGGAGCT GCCACCGCCCAGTTTTTGTGCTTCAATCTTTGCATGCTTTGACAACAAGCCAGTCATTACTGGATTGTGTAAGATCCACA GAGGGTTGTGCTCTTTAAAAGAAACATTTTGCCTTTATGAAGGGCAGGCAGTGCTCAAGTTAGTAGCTCTACTGGACCAC ACAAATGTGACTGTGGTTGAGGCGGCGCTCGCAGCGTTATCTACTTTGATAGATGATGGGGTAGATATTGAGCAAGGAGT GTTGGTTTTGTGTGAAGCAGAGGCAGTGAGGCCTATACTTGATGTGTTACTTGAGAAAAGGTCAGAGAATTTGATGAGGA GGGCAGTTTGGGCAGCAGAGAGGCTATTAAGAACAGATGATATAGCCTATGAAGTTTCGGGAGATCAAAATGTGAGTACT GCACTTGTGGATGCTTTCCAGCATGGTGATTATAGAACTAGACAGATAGCTGAGAAAGCCCTAAAGCATGTTGATAAGAT ACCCAACTTCTCAGGAATCTTTCCAAACATGGGATGA
CDS sequence (LotjaGi1g1v0567500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCGGATGATAGCTTTCATTTTGAGAGGTTGCACAT TGAGCCTATTTACGACGCCTTTGTGTGTCCGCTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGACAGA CTTATGAACGTGAAGCAATTGAAAAATGGTTCAGGGAATGCAAGGAGAGTGGGCGGAAACTGGTTTGCCCTTTGACCCTG CACGAATTAAAAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGATTGCCAGGAATGAAGC TGCACAGCTGGATATGGCTCGCCGTTCATTGAATACGGGGAGTCCGGAAATTGAAACTCTCCAGGCATTAAAGTATGTCC AGCACGTCTGTCAAAGAAGTCGGTCAAATAAGCACATGGTCCGCAGTGCAGGGCTTGTACCAATGATTGTTGACATGCTG AAGAGTAGCAGCCGTAAGATTCGTTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTAGAGGAAGATGATGAGAATAAGGA AATATTGGCCGAAGGGGACACTGTTCGTACGGTAGTTAAATTCCTTTCTCATGAGCTTTCTAAAGAAAGAGAGGAGGCTG TCTCCTTGCTTTACGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGATCTATTCTTATATTG GTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCCACTGTTCAGAAGGCTGATAAAACATTAGAGAATCTGGAGAAGTG TGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTGACCCATCTTCTTGAAGGTTCACCAGAAA CTAAACTCTCCATGGCTGGATACCTTGGTGATCTCGTTTTGAACAACGATGTCAAAGTCTTTGTTGCTAAAACTGTAGGT TCATCTCTAATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATG TGAGCCAAGCGCAAAGGTTTTAATAGAAGCCGGCATCCTTTCCCCTCTTGTCAAGGACCTGTTTGCAGTGGGTCATAATC AGCTTCCAACACGCTTAAAGGAGGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCGGGTGAAGACTTTGATTCCATT CCATTTGGAACTGATGACCAAACTCTGGTCTCAGAGGATATAGTTCATAATCTCCTCCATCTTATAAGCAACACTGGTCC AGCAATCGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACCAGTTCTCCAACTACAGTCGTGGGTGTTGTTGCTGCAA TCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCTTAAAA CTTCTTCAGAATTTGTCACCCCACATGGGTCAGGAATTAGCTGATGCACTACGTGGCTCAGTTGGACAGCTTGGCACTCT AGTTAAAGTCATATCAGAAAATACAGGAATCACTGAGGAGCAGGCAGCGGCTGTTGGCCTTTTAGCAGATCTTCCCGAGA GAGATTTGGGTCTCACGAGACAGCTACTGGACGAAGATGCCTTTTTGATGGTCATATCTAGGGTGATTGCCATCAGGCAG GGAGAGATCAGAGGCAGTCGCTTCCTGACACCGTTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGAGTTACATATGTCTT GGCTGATGAGCCAGATGCCGTTGCACTTTGCCGCAATCACAATCTCGCTGCCCTGTTTATCGAACAGCTTCAAGCCAATG GGCTTGATAATGTTCAGATGGTTTCTGCTACAGCTTTAGAGAATTTATCGCAAGAATCAAAAAATTTAACCAGAATGCCG GAGCTGCCACCGCCCAGTTTTTGTGCTTCAATCTTTGCATGCTTTGACAACAAGCCAGTCATTACTGGATTGTGTAAGAT CCACAGAGGGTTGTGCTCTTTAAAAGAAACATTTTGCCTTTATGAAGGGCAGGCAGTGCTCAAGTTAGTAGCTCTACTGG ACCACACAAATGTGACTGTGGTTGAGGCGGCGCTCGCAGCGTTATCTACTTTGATAGATGATGGGGTAGATATTGAGCAA GGAGTGTTGGTTTTGTGTGAAGCAGAGGCAGTGAGGCCTATACTTGATGTGTTACTTGAGAAAAGGTCAGAGAATTTGAT GAGGAGGGCAGTTTGGGCAGCAGAGAGGCTATTAAGAACAGATGATATAGCCTATGAAGTTTCGGGAGATCAAAATGTGA GTACTGCACTTGTGGATGCTTTCCAGCATGGTGATTATAGAACTAGACAGATAGCTGAGAAAGCCCTAAAGCATGTTGAT AAGATACCCAACTTCTCAGGAATCTTTCCAAACATGGGATGA
Protein sequence (LotjaGi1g1v0567500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMAASWDGSNDPGSQSDDSFHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTYEREAIEKWFRECKESGRKLVCPLTL HELKSTELNPSMALRNTIEEWIARNEAAQLDMARRSLNTGSPEIETLQALKYVQHVCQRSRSNKHMVRSAGLVPMIVDML KSSSRKIRCRALETLRIVVEEDDENKEILAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGSILIL VGMTSSKSEDLSTVQKADKTLENLEKCENNVRQMAENGRLQPLLTHLLEGSPETKLSMAGYLGDLVLNNDVKVFVAKTVG SSLINIMKSGNMQSREAALKALNQISCEPSAKVLIEAGILSPLVKDLFAVGHNQLPTRLKEVSATILANVVNSGEDFDSI PFGTDDQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVVGVVAAIKSSGATISLVQFIEAPQKDLRVASLK LLQNLSPHMGQELADALRGSVGQLGTLVKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEDAFLMVISRVIAIRQ GEIRGSRFLTPFLEGLVKILARVTYVLADEPDAVALCRNHNLAALFIEQLQANGLDNVQMVSATALENLSQESKNLTRMP ELPPPSFCASIFACFDNKPVITGLCKIHRGLCSLKETFCLYEGQAVLKLVALLDHTNVTVVEAALAALSTLIDDGVDIEQ GVLVLCEAEAVRPILDVLLEKRSENLMRRAVWAAERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAEKALKHVD KIPNFSGIFPNMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 811 | 810 | 0.0 | – | |
| PANTHER | 2 | 811 | 810 | 0.0 | – | |
| Gene3D | 21 | 112 | 92 | 3.2E-23 | ||
| SUPERFAMILY | 24 | 111 | 88 | 1.34E-22 | – | |
| ProSiteProfiles | 29 | 108 | 80 | 25.61 | ||
| Pfam | 32 | 106 | 75 | 6.5E-16 | ||
| SMART | 33 | 101 | 69 | 1.1E-23 | ||
| CDD | 34 | 79 | 46 | 1.18796E-18 | – | |
| Gene3D | 113 | 239 | 127 | 1.0E-19 | ||
| SUPERFAMILY | 116 | 444 | 329 | 2.24E-34 | ||
| SMART | 140 | 180 | 41 | 0.02 | ||
| SMART | 182 | 222 | 41 | 69.0 | ||
| Gene3D | 247 | 643 | 397 | 6.0E-26 | ||
| Coils | 257 | 277 | 21 | - | – | |
| SMART | 267 | 307 | 41 | 130.0 | ||
| SMART | 347 | 392 | 46 | 30.0 | ||
| SUPERFAMILY | 458 | 799 | 342 | 6.81E-17 | ||
| SMART | 590 | 631 | 42 | 280.0 | ||
| Gene3D | 654 | 799 | 146 | 3.9E-9 | ||
| SMART | 672 | 713 | 42 | 20.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi1g1v0567500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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