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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0570100 |
| Transcript ID | LotjaGi1g1v0570100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyol transporter; TAIR: AT3G18830.1 polyol/monosaccharide transporter 5; Swiss-Prot: sp|Q8VZ80|PLT5_ARATH Polyol transporter 5; TrEMBL-Plants: tr|G7J6H8|G7J6H8_MEDTR Polyol/monosaccharide transporter 1; Found in the gene: LotjaGi1g1v0570100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110309715..110311909) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAGGGAAGAGGAATTGAAGCAGCAGCTCATAAATCTCTTGAGGATTTTGATCCTCAAAGGAAGCCCAAAAGCAG CAAGTTTGCTTTTGCTTGTGCCATATTGGCTTCCATGACTTCTATTTTACTTGGTTATGGTCAGTGCAACTACATATCCA TCACATTCACGTATAATCATCATTTTCTTAATTAGCTAGCTTGCTATGTTTATCTCTTCTTCTACAACAACTTGTGAGAG TTAAAAATCACATTCATAAATGTACACCATAACAGTAACAACCCTCATATACAACATTTTTTTTTCTATCTTATTTTTCA AATCACATCACATCCATATTATATTTATCACTTATCTCTCTGTTCACAAACACGAAACATTTTAGAACTATTATATAGAA TATCACCATTTCAGTGCAATATAGCATGCATTGTTCTAAACCATCAACAACCTCCACTCTCTGTTGTGTTGCACAGTGGA TGCTGTTATGTAATACACTATATAAAAACTGAGTGGCACAGTGGATGCTGTTATGTTGCAGATATTGGAGTGATGAGCGG AGCAGTGATATACATAAAACGAGACCTCAAATTATCAGACGTGCAAATCGAAATCCTCGTCGGCATCATCAACCTCCACT CTCTGGTAGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATCGGACGCCGTTACACAATCGTCCTCGCTGGAGGCATC TTCTTCACCGGCGCCCTCCTCATGGGATTCTCCCCCAACTACTCTTTCCTAATGTTCGCACGCTTCATAGCCGGCATCGG CATTGGCTACGCCCTCATGATCGCCCCCGTTTACACCGCCGAAGTCTCCCCCGCTTCCTCTCGTGGCTTCCTCACCTCCT TCCCCGAAGTAACTAACTAACTAACTAACTCCTCCACCTACATTTTGTTGGTACCCGAACACGCAGCGAAAAGTTAGAGC ACAAAAACTCCTCTTACTTGTGAGAACAGTGCTCATAACTTTCCGCGCTGCATGCTCTGGTACCAACACATTCATCGATT AATTAACCAAATTAATTCTAATTATCAGCTAATCACCCTTAATTATGCAGGTTTTCATCAATGGAGGGATCTTACTTGGA TACATTTCAAACTACGGATTTTCAAAGCTTTCACTAAGCTTAGGATGGAGGTTGATGCTCGGAATCGGGGCGGTTCCGTC GGTGATTCTGGCAGTCGGAGTTTTAGCCATGCCGGAGTCACCTCGCTGGCTCGTAATGAAGGGGAGGCTTGGAGAAGCAA CGAAAGTCCTCAACAGAACCTCCGATTCAAAGGAAGAAGCTCAGCTCAGGCTCGCCGAAATCAAAGCCGCCGCCGGAATC CCCGAATCCTGCACCGACGACGTTGTTCACATCACCAAGAACAGCCACGGCGGCGGTGGCAGCGGCGGCGAAGTGTGGAA GGAGCTGTTCCTTCATCCAACACCGGCGGTGCGTCACATCCTCATCGCGGCTCTCGGGATCCACTTCTTCCAGCAAGCAT CGGGAATCGACGCCGTCGTTTTGTACAGTCCCACCATCTTCCGCAAGGCGGGGATCGAATCCGACACGGAGCAGCTCCTC GCCACCGTGGCCGTCGGATTCTGCAAGACGTTCTTCATCCTGGTGGCGACGTTTTTGCTGGACCGGGTCGGGCGTCGGCC GCTGCTGCTAACGAGCGTGGGCGGCATGGTGATCTCGCTTTTCACGCTCGCGGCGAGCCTAACCGTCATTGATCACGCAA ACCACGGGAAGGTGATGTGGGCCGTTGGATTAAGCATCGCAACGGTTTTGTCCTACGTGGCAACTTTCTCCATTGGTGCG GGCCCCATTGCGTGGGTGTATAGCTCGGAGATTTTCCCGTTGAGGCTGCGCGCTCAGGGTGCGGCGGTGGGAGTGGTGGT GAACAGAGTCACCAGTGGGGTGATCTCAATGACGTTTTTGTCCCTGTCAAATAAGATCACCATTGGTGGAGCTTTCTTCC TCTTCGGTGGAATCGCCACGTGTGGGTGGATCTTCTTCTATATCCTGCTCCCTGAAACACAGGGGAAGACCCTAGAGGAA ATGGAAGGGTCTTTTGGTAAAATATTTGGAGTGAAATCCAGCGCCAAGAGTGTGGGAAATGATAATGGCGGGATTCAGTT AGCCAATTAGGGACCAACAGAATAATCGTGTTTAA
CDS sequence (LotjaGi1g1v0570100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGGGAAGAGGAATTGAAGCAGCAGCTCATAAATCTCTTGAGGATTTTGATCCTCAAAGGAAGCCCAAAAGCAG CAAGTTTGCTTTTGCTTGTGCCATATTGGCTTCCATGACTTCTATTTTACTTGGTTATGATATTGGAGTGATGAGCGGAG CAGTGATATACATAAAACGAGACCTCAAATTATCAGACGTGCAAATCGAAATCCTCGTCGGCATCATCAACCTCCACTCT CTGGTAGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATCGGACGCCGTTACACAATCGTCCTCGCTGGAGGCATCTT CTTCACCGGCGCCCTCCTCATGGGATTCTCCCCCAACTACTCTTTCCTAATGTTCGCACGCTTCATAGCCGGCATCGGCA TTGGCTACGCCCTCATGATCGCCCCCGTTTACACCGCCGAAGTCTCCCCCGCTTCCTCTCGTGGCTTCCTCACCTCCTTC CCCGAAGTTTTCATCAATGGAGGGATCTTACTTGGATACATTTCAAACTACGGATTTTCAAAGCTTTCACTAAGCTTAGG ATGGAGGTTGATGCTCGGAATCGGGGCGGTTCCGTCGGTGATTCTGGCAGTCGGAGTTTTAGCCATGCCGGAGTCACCTC GCTGGCTCGTAATGAAGGGGAGGCTTGGAGAAGCAACGAAAGTCCTCAACAGAACCTCCGATTCAAAGGAAGAAGCTCAG CTCAGGCTCGCCGAAATCAAAGCCGCCGCCGGAATCCCCGAATCCTGCACCGACGACGTTGTTCACATCACCAAGAACAG CCACGGCGGCGGTGGCAGCGGCGGCGAAGTGTGGAAGGAGCTGTTCCTTCATCCAACACCGGCGGTGCGTCACATCCTCA TCGCGGCTCTCGGGATCCACTTCTTCCAGCAAGCATCGGGAATCGACGCCGTCGTTTTGTACAGTCCCACCATCTTCCGC AAGGCGGGGATCGAATCCGACACGGAGCAGCTCCTCGCCACCGTGGCCGTCGGATTCTGCAAGACGTTCTTCATCCTGGT GGCGACGTTTTTGCTGGACCGGGTCGGGCGTCGGCCGCTGCTGCTAACGAGCGTGGGCGGCATGGTGATCTCGCTTTTCA CGCTCGCGGCGAGCCTAACCGTCATTGATCACGCAAACCACGGGAAGGTGATGTGGGCCGTTGGATTAAGCATCGCAACG GTTTTGTCCTACGTGGCAACTTTCTCCATTGGTGCGGGCCCCATTGCGTGGGTGTATAGCTCGGAGATTTTCCCGTTGAG GCTGCGCGCTCAGGGTGCGGCGGTGGGAGTGGTGGTGAACAGAGTCACCAGTGGGGTGATCTCAATGACGTTTTTGTCCC TGTCAAATAAGATCACCATTGGTGGAGCTTTCTTCCTCTTCGGTGGAATCGCCACGTGTGGGTGGATCTTCTTCTATATC CTGCTCCCTGAAACACAGGGGAAGACCCTAGAGGAAATGGAAGGGTCTTTTGGTAAAATATTTGGAGTGAAATCCAGCGC CAAGAGTGTGGGAAATGATAATGGCGGGATTCAGTTAGCCAATTAG
Protein sequence (LotjaGi1g1v0570100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEGRGIEAAAHKSLEDFDPQRKPKSSKFAFACAILASMTSILLGYDIGVMSGAVIYIKRDLKLSDVQIEILVGIINLHS LVGSCLAGRTSDWIGRRYTIVLAGGIFFTGALLMGFSPNYSFLMFARFIAGIGIGYALMIAPVYTAEVSPASSRGFLTSF PEVFINGGILLGYISNYGFSKLSLSLGWRLMLGIGAVPSVILAVGVLAMPESPRWLVMKGRLGEATKVLNRTSDSKEEAQ LRLAEIKAAAGIPESCTDDVVHITKNSHGGGGSGGEVWKELFLHPTPAVRHILIAALGIHFFQQASGIDAVVLYSPTIFR KAGIESDTEQLLATVAVGFCKTFFILVATFLLDRVGRRPLLLTSVGGMVISLFTLAASLTVIDHANHGKVMWAVGLSIAT VLSYVATFSIGAGPIAWVYSSEIFPLRLRAQGAAVGVVVNRVTSGVISMTFLSLSNKITIGGAFFLFGGIATCGWIFFYI LLPETQGKTLEEMEGSFGKIFGVKSSAKSVGNDNGGIQLAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 13 | 517 | 505 | 9.0E-278 | – | |
| PANTHER | 13 | 517 | 505 | 9.0E-278 | – | |
| SUPERFAMILY | 19 | 494 | 476 | 1.29E-68 | ||
| TIGRFAM | 22 | 493 | 472 | 3.0E-100 | ||
| Gene3D | 23 | 500 | 478 | 3.2E-126 | – | |
| Phobius | 29 | 57 | 29 | - | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| ProSiteProfiles | 33 | 486 | 454 | 48.703 | ||
| Pfam | 33 | 495 | 463 | 6.6E-105 | ||
| CDD | 36 | 493 | 458 | 0.0 | – | |
| PRINTS | 41 | 51 | 11 | 1.5E-21 | ||
| Phobius | 58 | 68 | 11 | - | – | |
| Phobius | 69 | 86 | 18 | - | – | |
| Phobius | 87 | 97 | 11 | - | – | |
| ProSitePatterns | 87 | 104 | 18 | - | ||
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 98 | 116 | 19 | - | – | |
| Phobius | 117 | 121 | 5 | - | – | |
| Phobius | 122 | 144 | 23 | - | – | |
| TMHMM | 123 | 145 | 23 | - | – | |
| PRINTS | 124 | 143 | 20 | 1.5E-21 | ||
| ProSitePatterns | 129 | 154 | 26 | - | ||
| Phobius | 145 | 155 | 11 | - | – | |
| Phobius | 156 | 174 | 19 | - | – | |
| TMHMM | 160 | 179 | 20 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| Phobius | 186 | 209 | 24 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 210 | 291 | 82 | - | – | |
| Coils | 229 | 249 | 21 | - | – | |
| Phobius | 292 | 319 | 28 | - | – | |
| PRINTS | 303 | 313 | 11 | 1.5E-21 | ||
| Phobius | 320 | 330 | 11 | - | – | |
| TMHMM | 331 | 353 | 23 | - | – | |
| Phobius | 331 | 352 | 22 | - | – | |
| Phobius | 353 | 358 | 6 | - | – | |
| Phobius | 359 | 382 | 24 | - | – | |
| TMHMM | 360 | 382 | 23 | - | – | |
| Phobius | 383 | 393 | 11 | - | – | |
| Phobius | 394 | 420 | 27 | - | – | |
| TMHMM | 397 | 419 | 23 | - | – | |
| PRINTS | 398 | 419 | 22 | 1.5E-21 | ||
| PRINTS | 421 | 433 | 13 | 1.5E-21 | ||
| Phobius | 421 | 431 | 11 | - | – | |
| TMHMM | 432 | 454 | 23 | - | – | |
| Phobius | 432 | 452 | 21 | - | – | |
| Phobius | 453 | 457 | 5 | - | – | |
| Phobius | 458 | 482 | 25 | - | – | |
| TMHMM | 458 | 480 | 23 | - | – | |
| Phobius | 483 | 521 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0570100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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