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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0570800 |
| Transcript ID | LotjaGi1g1v0570800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Guanine nucleotide-binding protein beta subunit-like protein; TAIR: AT4G34460.1 GTP binding protein beta 1; Swiss-Prot: sp|P93397|GBB1_TOBAC Guanine nucleotide-binding protein subunit beta-1; TrEMBL-Plants: tr|I3S0B5|I3S0B5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0570800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110438017..110441454) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCGTTACGGAGCTCAAGGAGCGTCACCTCACGGCCGCCGAGACTGTCAACAATCTCCGGGAACGGTTGAAGCAGAA GCGCCTTTCATTGCTCGATACCGATAGTGAGACTTCAATTCTTCTTTAGATCTCTTCTCTGCTCTTGTTAATTACTCAAA CTGAATCCATTTCTCTGTGTTTGCAGTTTCTGGCTACGCGAAATCTCAAGGTAGAGCTCCTGTCACGTTTGGACCAACTG ATATCCTTTGCTGTAGAACGCTGCAAGGTCATACCGGAAAGGTAACCTAATTCAGTTATGGATGAACCTCTCTTTGATTT CTGAATTTTAGTTCTGCTTCCTTTGCACTTCATAGGATTATGGAAATTGCAATATGAAGCATTCGTGTTATGAATTCTGG AATTTTTAAATTTAGGCGCTTTGTGTTGAAGGATTGTGCAAAAAACTACAAATTGAAAATGAAATAGATGAGGAGGGTTA GGGATTCGATAAGGAAAACTAAGCTCTGCTCTTTTTGTTGTTATTATAAGCAAAGGTGGATTTAGATCTTTGTTGCCAAA AGTGAATTGTTGAACTGGTTATTGTGTCTTAGACTCTTAGTCCACGTGTTTTATCAATGAGTTTCACTGGAACCAAGGGA GAGGAGTGTAGTTAAAGGCAACAAAAGGTACACGGAAAGTGCGAAGGCCAGGTGCCAGAAGCAATACAGCACCGGCACCC GGTGCCGGTTGAGGTGTGAACTGCTCTGGCATTGTAGGAAAACCTTTTTAGTTTTTAGTGCAGATAAGACACATGATACC TTTTTGACAACAGTTAAAAAACCTACAAAGCATAGCTGTCCGACATAGTAACTGCAATACCGAAGGGATTTGGATCCCCT GGTCAAGAGTCATTTACTTCTTTGATCACTCATTTGATAGCTAAGAGAGCTTCTGTGTTTTGGTTGTTTGTGAAATAGGC TCATACACAATTCAATCATGTTTTCTATTTACTACATAGCAAGCAATATTGACAACTCGTATTAACTTGTGTTCATTTGA ATTTTGCAGGTGTATGCGTTAGATTGGACTTCCGAAAAGAATCGAATTGTTAGTGCATCCCAGGACGGACGATTGATAGT GTGGAATGCTCTGACAAGCCAGAAAACTCATGCCATAAAGCTTCCGTGTGCATGGGTCATGACCTGTGCTTTCTCGCCAA CTGGTCAATCTGTTGCATGTGGTGGTCTTGACAGTGTTTGTTCTATATTCAATCTTAATTCCTCCACTGACAGGGATGGG AATCTAAATGTTTCGCGGATGCTTAGTGGACATAAAGGTTATGTTTCCTCTTGTCAGTATGTTCCGGATGAAGATACTCA CCTAATTACTGGTTCTGGTGATCAAACATGTGTTTTATGGGATATTACTACTGGCCTTAGAACATCTGTTTTTGGCGGTG AATTTCAGTCTGGACATACTGCAGATGTACTTAGGTATGCAAGTAGATTATTTTTATTTTTATTTTTATTTTTAATTTGA GCCAGTATTTTTTGTTTTTCATTTCTTAAACAGCTCATTTGAAATTTAGAGCAATTGTATAAATGCTAATCAAACAATTT TCTACAATCTGAACACACAATGATAAGAATATGAAATCTCACTGGTGGTAAACATGCTGGTTAAATTTAAATCCATAGCA TCTTCCTATTAGGTTCCTTTCATGTAGAACCCCCTCCCCCATATTCTTTAACATGATGTGCAGTTTCTAAGAAGTTTTTT TTTCTTTACTCGCTCTCAGCATTTCCATCAATGGATCCAACTCTAGAATGTTTGTATCTGGTTCTTGCGATGGAACTGCA AGATTGTGGGACACTCGTGTGGCAAGTCGAGCAGTGCAGACATTTCATGGACATGAGGGTGATGTCAATACTGTCAAATT CTTTCCTGATGGAAATAGATTTGGAACTGGCTCAGATGATGGCACTTGCAGATTGTTTGACATTAGGACTGGGCACCAAC TTCAAGTATATTATCAGCAACACAGTGACAATGAAATCCCACATGTAACCTCCATGGCATTCTCCATATCCGGAAGACTT CTTTTTGCTGGATACACAAACGGCGCGTGCTATGTTTGGGACACTTTATTGGCAAAGGTAATAGGTTCTTCAGTGTAATG TAAAACGAAGTAGGGTGTTTTATTTCTGCTCATAGCCTTGCAACACAGTTAAATCCAGTTGAGCTTTTTAACAAAATATA TGTTGCTTTATAGTTGTTTATCTTCAGTGTGAAATTGTAGTAGATTTGCCACGCTATTGCCTTCTTGAATTGGTCGTTGT TTTTATTTTGTAACTCAATTAGGGCTAATTATTATGTTTGTCAGCATATTGGATATTCTGGTTTTGAGAGGTTTGTGTTA TGTCTCAAGTCATTGCCTAACACTTGGGCTTGCTTTGTGTGATGGTAGAAGGAGTTAAGATGAATCTTTTGAAGTGATTG TTTGAGAATTTTTCTTATTTTGGATAAAAGGCAAGAGAAGGGATGATGAAAAAGTGTGGGAGTTCCAACTTTGACTATAT GATTTGTGTAGACCGACAATATATTTTTCATGACCCAACTATCCCAAAAGTTGGAGCTTATGGGGCTTGAAGCGTGAACA ATGCACAAGTGAACTAACTACCTTGTGCGGAAATTCAACTTTTTATTACAATAATCGGGAGCAGTAGGGATTGATCTCTA GACCACTTGGTTATAGAGGCTCAAATACCATGTCATGAACCAACTATCCCAAAAGCTTAAGTTGTTGGGTAAATGATATT ATATTTCTAACATATATAAAGTCTAATGCTTGGCAAACTGGGCATTTTTTTTCTTTTAGAAAGAAAACTGATAGAAATAA CAAAATCCAATCCCATCTTGTAACATCTGGTCATATCTTAATCTTTTTAGGCATTGGTTTCTCCCACGACTGCTTACTTG TATTGCTCGTGTGCTTGTGTCGTTGCAGCTTCTTGTAAGGCTGAATGATTTCTTCATTTTATTGTAGGTGGTCTTGAATC TAGGATCACTTCAAAACTCTCATGATGGAAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTATGTACAGGA AGTTGGGACACAAATTTAAAGGTGAGCGTGCATTTTGGTCTGATTCTGAAATTTATGGGTTATGTGTGACACATAGGAGC AATACCAAATTTTGTAAGTTAGCCTCTATGTTGGTTGAAAATTTCATATTTTTTTCAAATCAGTATATTATAGGATTGAA CAAAAAAAGGTGGTTTATATTTGTCTGGTTAGTTTCTTTTTCTCTAATGTTAAAACTTAAAAGTAATCATGATTTAAGCC AAAATGTACGTTATATTGATCGATTACATGTGAGCTTATACAGATTTAACATGTGCCCACTTACGCTCTAGAACATAA
CDS sequence (LotjaGi1g1v0570800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGTTACGGAGCTCAAGGAGCGTCACCTCACGGCCGCCGAGACTGTCAACAATCTCCGGGAACGGTTGAAGCAGAA GCGCCTTTCATTGCTCGATACCGATATTTCTGGCTACGCGAAATCTCAAGGTAGAGCTCCTGTCACGTTTGGACCAACTG ATATCCTTTGCTGTAGAACGCTGCAAGGTCATACCGGAAAGGTGTATGCGTTAGATTGGACTTCCGAAAAGAATCGAATT GTTAGTGCATCCCAGGACGGACGATTGATAGTGTGGAATGCTCTGACAAGCCAGAAAACTCATGCCATAAAGCTTCCGTG TGCATGGGTCATGACCTGTGCTTTCTCGCCAACTGGTCAATCTGTTGCATGTGGTGGTCTTGACAGTGTTTGTTCTATAT TCAATCTTAATTCCTCCACTGACAGGGATGGGAATCTAAATGTTTCGCGGATGCTTAGTGGACATAAAGGTTATGTTTCC TCTTGTCAGTATGTTCCGGATGAAGATACTCACCTAATTACTGGTTCTGGTGATCAAACATGTGTTTTATGGGATATTAC TACTGGCCTTAGAACATCTGTTTTTGGCGGTGAATTTCAGTCTGGACATACTGCAGATGTACTTAGCATTTCCATCAATG GATCCAACTCTAGAATGTTTGTATCTGGTTCTTGCGATGGAACTGCAAGATTGTGGGACACTCGTGTGGCAAGTCGAGCA GTGCAGACATTTCATGGACATGAGGGTGATGTCAATACTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGCTC AGATGATGGCACTTGCAGATTGTTTGACATTAGGACTGGGCACCAACTTCAAGTATATTATCAGCAACACAGTGACAATG AAATCCCACATGTAACCTCCATGGCATTCTCCATATCCGGAAGACTTCTTTTTGCTGGATACACAAACGGCGCGTGCTAT GTTTGGGACACTTTATTGGCAAAGCTTCTTGTAAGGCTGAATGATTTCTTCATTTTATTGTAG
Protein sequence (LotjaGi1g1v0570800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVTELKERHLTAAETVNNLRERLKQKRLSLLDTDISGYAKSQGRAPVTFGPTDILCCRTLQGHTGKVYALDWTSEKNRI VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSSTDRDGNLNVSRMLSGHKGYVS SCQYVPDEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDGTARLWDTRVASRA VQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACY VWDTLLAKLLVRLNDFFILL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 336 | 336 | 5.2E-124 | – | |
| PANTHER | 2 | 328 | 327 | 9.9E-145 | – | |
| PANTHER | 2 | 328 | 327 | 9.9E-145 | ||
| Coils | 3 | 23 | 21 | - | – | |
| Gene3D | 10 | 335 | 326 | 1.0E-92 | ||
| SUPERFAMILY | 54 | 333 | 280 | 1.47E-64 | ||
| SMART | 54 | 93 | 40 | 1.3E-8 | ||
| CDD | 57 | 333 | 277 | 4.17712E-68 | – | |
| Pfam | 57 | 93 | 37 | 8.9E-5 | ||
| ProSiteProfiles | 61 | 332 | 272 | 42.659 | ||
| ProSiteProfiles | 61 | 102 | 42 | 14.385 | ||
| PRINTS | 61 | 77 | 17 | 4.0E-28 | ||
| ProSitePatterns | 80 | 94 | 15 | - | ||
| PRINTS | 80 | 94 | 15 | 9.7E-8 | ||
| PRINTS | 80 | 94 | 15 | 4.0E-28 | ||
| SMART | 96 | 135 | 40 | 0.0028 | ||
| PRINTS | 99 | 114 | 16 | 4.0E-28 | ||
| PRINTS | 117 | 134 | 18 | 4.0E-28 | ||
| SMART | 145 | 185 | 41 | 7.0E-8 | ||
| Pfam | 149 | 185 | 37 | 2.6E-4 | ||
| ProSiteProfiles | 152 | 194 | 43 | 12.647 | ||
| ProSitePatterns | 172 | 186 | 15 | - | ||
| PRINTS | 172 | 186 | 15 | 9.7E-8 | ||
| SMART | 192 | 233 | 42 | 6.1E-7 | ||
| ProSiteProfiles | 200 | 242 | 43 | 12.48 | ||
| Pfam | 201 | 233 | 33 | 0.0012 | ||
| PRINTS | 220 | 234 | 15 | 9.7E-8 | ||
| SMART | 237 | 276 | 40 | 5.4E-10 | ||
| Pfam | 241 | 276 | 36 | 6.5E-7 | ||
| ProSiteProfiles | 244 | 285 | 42 | 13.917 | ||
| SMART | 279 | 323 | 45 | 0.012 | ||
| Pfam | 287 | 323 | 37 | 0.0044 | ||
| ProSitePatterns | 310 | 324 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0570800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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