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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0573500 |
| Transcript ID | LotjaGi1g1v0573500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Werner syndrome-like exonuclease; TAIR: AT3G12460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase; TrEMBL-Plants: tr|A0A0S3RUI4|A0A0S3RUI4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0573500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110756455..110757625) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAACAAAGTCCCTATATCCAAACAAGTCTGGGTACTGGACCCTATCCAAAATTCCAAACCGTGCAGACATGGAAAC ATCGTGCCCCATTTTTCTCCATCAGTCTTCTCCCCAATCGTCTTCATTCTCAATCTTCTTCTAATCACACTCACCCCCAA CACAAAATCCAAACCCCTCCCTCCCTCTCTCTCTCTGGCATTCAACAATGAGAACATTCCTCGTAGACGACAACCACATC CCCATCGACATGCGAACCTACAACCCAAACCCCAATTCAACATCCCTCATCAGCATCGTCGACTACAACATCCCCGACGG CTACAACCTCTACGACGTAACCTTCCATTCCGACACCGTCCACACCCTCCTCACTTCCAAACCCGACGCCGTCAACGACT GGCTCACCGACACTCTCCACCTCCACCAACCCCACCCCTTCATCATCGCACTCCACCTCGAATCCCAACCCAACAACAAC CACCAACCCGCCACTCTCCACCTCTGCGTCGACCGCCGCTGCGTCATCTACCAACTCGCCCACGCCCAATTCATCCCCTT CCACCTCTCCTCCTTCCTCCGCGACCCCAATCACACATTCATCGGCGTAGGCATTGATGCCCACGCCGCCAGGCTCTTGG AGATCCTTAATCTTCCTGTGGCTAACTGCGTCGACCTCCGCTCCCTCGCCGCCGATGTGCTCGGTGACGAGGCGATGACG GCGGCGAGTCTTACTACGCTGGCGCGGCGCGTTCTCGGGAAGGATGTGGAGAAGCCGGAGAGTGTTGCGAGGAGCAGCTG GGACCGTGTGCGACTCACGGCGGAGCAGGTGAAGTACGCGACTGTGGATGCATTTGCCTGCTATGAGATTGGACGGCGTC TCTACTGTAATGCGTTTTGATTTTGTGTTTCCATTGTCGTTTTGCTGTGTTTGGTGCAGTCTTAGCAGTGTTGTTTGTTT CTGTGTTTCTGAATTTGAGGATCTGAACTTATTTTTTAGGTAAATCTGACAATGACAAATATTTAGGATTATGTAGCAGT CATATATACTTTCATGGATTTATGCCTATTATTTCTAAATCAAGTGGCTCTTTGGATGAGGACCAGAAGTTATTGGAGCT TCTCAATAAGAGATTTTACTTAGTGCCTATCCAAACAAGCTTAATCATTAC
CDS sequence (LotjaGi1g1v0573500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACATTCCTCGTAGACGACAACCACATCCCCATCGACATGCGAACCTACAACCCAAACCCCAATTCAACATCCCT CATCAGCATCGTCGACTACAACATCCCCGACGGCTACAACCTCTACGACGTAACCTTCCATTCCGACACCGTCCACACCC TCCTCACTTCCAAACCCGACGCCGTCAACGACTGGCTCACCGACACTCTCCACCTCCACCAACCCCACCCCTTCATCATC GCACTCCACCTCGAATCCCAACCCAACAACAACCACCAACCCGCCACTCTCCACCTCTGCGTCGACCGCCGCTGCGTCAT CTACCAACTCGCCCACGCCCAATTCATCCCCTTCCACCTCTCCTCCTTCCTCCGCGACCCCAATCACACATTCATCGGCG TAGGCATTGATGCCCACGCCGCCAGGCTCTTGGAGATCCTTAATCTTCCTGTGGCTAACTGCGTCGACCTCCGCTCCCTC GCCGCCGATGTGCTCGGTGACGAGGCGATGACGGCGGCGAGTCTTACTACGCTGGCGCGGCGCGTTCTCGGGAAGGATGT GGAGAAGCCGGAGAGTGTTGCGAGGAGCAGCTGGGACCGTGTGCGACTCACGGCGGAGCAGGTGAAGTACGCGACTGTGG ATGCATTTGCCTGCTATGAGATTGGACGGCGTCTCTACTGTAATGCGTTTTGA
Protein sequence (LotjaGi1g1v0573500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTFLVDDNHIPIDMRTYNPNPNSTSLISIVDYNIPDGYNLYDVTFHSDTVHTLLTSKPDAVNDWLTDTLHLHQPHPFII ALHLESQPNNNHQPATLHLCVDRRCVIYQLAHAQFIPFHLSSFLRDPNHTFIGVGIDAHAARLLEILNLPVANCVDLRSL AADVLGDEAMTAASLTTLARRVLGKDVEKPESVARSSWDRVRLTAEQVKYATVDAFACYEIGRRLYCNAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 225 | 189 | 4.1E-61 | – | |
| PANTHER | 37 | 225 | 189 | 4.1E-61 | – | |
| CDD | 56 | 226 | 171 | 3.60572E-43 | – | |
| SUPERFAMILY | 72 | 226 | 155 | 6.07E-33 | ||
| Pfam | 77 | 222 | 146 | 3.6E-9 | ||
| Gene3D | 80 | 228 | 149 | 1.9E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. | ||
| Molecular function | 3'-5' exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. |
Expression pattern of LotjaGi1g1v0573500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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