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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0574100 |
| Transcript ID | LotjaGi1g1v0574100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2; TrEMBL-Plants: tr|A0A0B2Q3N5|A0A0B2Q3N5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0574100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110845021..110849070) extracted from Lotus japonicus Gifu genome v1.2.
TTAATATTATTAATTTGTTTGATGTCGCACTCGCACACACTCCTTTATGAATGCAACCTGATCTCCTGGGGGAGTTTCTC TGTGCTCTCACTGCACGTTTCTGTTGGTGTTGGCAGTGTCGCAGTCCCTGTCTCTGTCCCTCCCTGCCTTCTTCCACCAC ACCACACCACTCCACTATTCTCCATTTCATCACATCTTTCATTCTTAATCCCTTTGCAGTAATAAACGCATTCAACTTTC CTCTACCTGTTCCAAACCTTGAATCTTTTGGCACCTTTCATTAATGGGGTTGAAGGGAATGCTCACCTAATCCACAGTTT CTCTAAATTCTTTAACCCCAGCAACTGCTTTTTCTTTCACTTTTTTCCCTTTTAAATAATGTGTTTTTCTTCATATTCTT CCACCCAAACCCAAAACCTGTTCTGAGAAAATAATGTTGTTTGTTACCTTGCTAGCTGTTGTTGTTCTTGTTGTTGTGTA ATTTTTTCTTTGTTCTCTCTTCTGGGTCCATAAATGTCGACTATGCAGATGTCTCATGTTGATTTAGAGCAAGGGAATCA TCATCATCGTCGTTCGGTTGTTGGAAGCGATGTGAGTGGTGGTGAGGGGAGCCTGTGCTTCTCTGATGTTGATATTGATG ATGGGTCTTGCTACTCTCGCTTCTATTCAACCAACGGTGGTTCGTATGATGATTACAGCTTCGCTTGTGTTTCTGATCCT GAAGGTGGTGGGGGTGTTGTTGATTCTGGGAGGGCTTCTTCTGTTACTGATTGTTCTGTGGAGGTGGAAATTAGAACTGG GGTTCCTGAAATTAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGACTGAGAGTC ATGAGTCTGGTCCTCCCATTGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGGCC TGGTTCAAGATTAAGGGAAATAGGTCAGTCTCAAACCCTTATCTTCCCTTGTTTTGATTCTGACTTTTTATTTTATTTTA TTTTTATGCAATTATATCTCAAAGGTTTTAGAAAATTTTAGACACCCTTTTGTTGGTTCATTGCATTGAGAAAATTTCTC AATTTATTATGGCTAGGTGTTTCCAGGTAGATGATTCACAATTACTGGTATTTTTTTTTGTTTACTTGAAAATATGATGT GAATGATTATAGAGGAGGAAATTAATTAAAGTATGTACATGGTTGGGAATTTGAGGAGTGAATGGTCAATTCGGTCCCTC GGGGTCTTTTAAACATATTTCCTTCTTTGCGGAACTAATTTGGCAGCGATGAGATCATTCGGGGACTAAGTTGACCATTC ACTCGGAATTTGAGTTATGGATTGTTCCATGAAGTGATGAAGGAAAAGGAGAAGGAGATGATGGAAAAAGTAATTGGAAG CATATTTTAGAAGGTTTTTGTGAACAAAATTGCAAGGAGGCCAGGCTCAATTATTTCTTCAATAAAGGGGAAAGTTAGAG AAGATTAAATAATCTAAAGAAGATGGAAAATGAAAGGAGTAAAGCATCAGTGAGTCCCACTGATTCGCTGACATGTCTAA ACACAGTGGGATTCTTTGTTGGCTGTTGCTTTGTCCCTTTTCTGATATTTAGGAATCTCCATATTATTACTCATCTTTCT TATTCTTTTTATCCCTTTCAAAGTGGAGATTTGACCCCTTCTGACTACTATTAATGTATTCAAATATCTCTGTGGGTGCT AGTTGCTGGCTTATTCGCCACGTACAATATTTTAATCTTCAAATTTCTGGTCTCAGATAATGTGTTCATTTAAGATTTTT TATCACAACTTTTAGATTGCATAATTGTGGTGACTTGTGATGAGAACCGAAAACAATTGATTTGACTATACAAGGATCCT TCTTGCAGTTCTTTGAGGTAGAATATTTTCCTACTTTATGTACAAGTTCTGCAGTGCCAAGTGCATGTTGGAAACTAGTT CAAAAACCTCGGTAAATCCAAAATCATGGTGGACAGAAGCAACTTCTTTTAGCTTTTGCTTCTATCCATTATGATTTTGG CTTTATCGTGGTTTTCTAATGAGTTTCCAAACATGTACTTGCATATAAGACCTTTAAACAGTAGCACAGTGCTAAACCTT AATTTTAATTTCCATCCCTAAATTCTAACAACAACAACAACAAAAGTGTAATCCCACTAAGTGAGGTCAGCTATTCCATC CCTAAATTCTAAATAGATATAATTATATATGTTTTCTATGCTCTTATGAATACATGGTAGGACATGCTTTGTTAACTGGT GACCATTCATGCTTCATTGTCAATTGAAATATCAATTTGTTGAGGATGGATCTATGGTTATGTCGAATTCAGACGCAAAT TCATCCAAGTGCATTGTTTCATGGCTAAATTAAATCCAATAATGGAACAGAATATGAATCTTTTCAATTTGGAATCTTCT TTTAATATGTGTTGTAGACTTGTAGTTGATTCCTTCATTGGTGGCAAATAATTCATGATGTCTTCTTTTCCTTTGCTTTG GGTTGGGGTTTAGAACTGCTACTTGGTTTGTGAAAGACAGCCGTGGATTTGTAAAAGGTAGTTGTACTCTTATATTCAGA TTCTGATTAGGCTTGCTATAGCTGAAAGAAATATAAAATCATGACGAATTATTCTGATTATTTAAACCTTTCTGTCATAA ATGTTATCCTAATGGTTGCTTGAGATTGACTTTGTTGAATTTGAATCAAATTCATTTATGGCTAGAGTGTGAGACTAGTT TCTCCCTCCTTCAACAATTTTATGATGTATGAGCAAATAATTATACAATAATACTTCATCTACACCCCAATTCCACCCAC ACCTAGATTGAGAGAGGAAGAGAAAAGAGAGAAATGAGAGATCTGATAGATAATGTTATAGGAAATGCAGAGAGAGGTAG GTGAAAATAAGATGGAAAAGAATGGCGCGTGTGAATGAATCAAACCTCGATGATTATATGATGTTTTACGTTCCTGCATG TTAATGATATGACTTGTTTCCTTATTTATTTATATCATTCAGACATGAATTGGCTATGCATTTAGTTCTTAGTTTTCTTG TTTGTTTGAAACACCCAGATTTGTCAAGTTGATAATATTGCCTTTAATGTGTGGTTATATATATGATTGCACTGCCGTAT ATTGTTGGGGCATGAACAGTAACTGGAGGCATGTAGAAAACCAGTGTTCTGGGATTTTTTACGTACTTTCTTCAGGTCAT CTAAATATAAAACTATGATTATAGGAATTCTCCTTAATAGATTTCCATATTAGTTTTGGAATTTGTATTTTTCTAATTGT TTCTGTGTGCTGAAATTTTAATAGGACCTGTGAAATTTGTCATTCTGTTGCCCGAAATGTTTATGGAGCGAATGAGGAGT CAACAGAGCAAGTGAGCGACAATAACATTGCTCCTGCTACAGCTACACTCTCAGCACCTGCTCCGTCAGCAGAAACTCAT AGATTTTGGCATGGCCATCGCTTCCTGAATTTTCTGCTCGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCA CTTCAATGTGCCATCATCATAGTTTCCTGAGGCAGTTTCAGGCATAACTTGAAGTACATGTAAAAGCTGAATGGGGAGGG GAGCAAACAAGAGAAAGATGAAAAGAAAAGGGAGGCAAATTGAAAGAAAGAAATCCAAGCCCTTAGTCGATGGAGTTCAT AGAGAATGAATGCTTCTACAATTTCTAGCCTTGTTCCCTTTAAATAGGTGGGCAGGATAACTTCCTTTTATTCAATGCAA ATAGACGTCTTCATTTTCTGTTGTTCATTCGTCCTAAATTATTGAGCTTTACAAGGCTTTCTTAAATCTTAACAATCAAT GTAATTTCTGGACAAGTACACTAGAATGTTTTTTTCTTTTTTCAAATGTATATTATATATTTCACACTGTAACTACAGTG CTTTTATCTTGCATGGTGATCTCTCTTAGTACTGAAGCCTGCTTTTGATT
CDS sequence (LotjaGi1g1v0574100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACTATGCAGATGTCTCATGTTGATTTAGAGCAAGGGAATCATCATCATCGTCGTTCGGTTGTTGGAAGCGATGT GAGTGGTGGTGAGGGGAGCCTGTGCTTCTCTGATGTTGATATTGATGATGGGTCTTGCTACTCTCGCTTCTATTCAACCA ACGGTGGTTCGTATGATGATTACAGCTTCGCTTGTGTTTCTGATCCTGAAGGTGGTGGGGGTGTTGTTGATTCTGGGAGG GCTTCTTCTGTTACTGATTGTTCTGTGGAGGTGGAAATTAGAACTGGGGTTCCTGAAATTAAGGTGCATTTGGCTAAAGT GGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGACTGAGAGTCATGAGTCTGGTCCTCCCATTGAATTGGGTTGTT CTTGTAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAA ATTTGTCATTCTGTTGCCCGAAATGTTTATGGAGCGAATGAGGAGTCAACAGAGCAAGTGAGCGACAATAACATTGCTCC TGCTACAGCTACACTCTCAGCACCTGCTCCGTCAGCAGAAACTCATAGATTTTGGCATGGCCATCGCTTCCTGAATTTTC TGCTCGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCATCATCATAG
Protein sequence (LotjaGi1g1v0574100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTMQMSHVDLEQGNHHHRRSVVGSDVSGGEGSLCFSDVDIDDGSCYSRFYSTNGGSYDDYSFACVSDPEGGGGVVDSGR ASSVTDCSVEVEIRTGVPEIKVHLAKVEKDCRICHMGLETESHESGPPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCE ICHSVARNVYGANEESTEQVSDNNIAPATATLSAPAPSAETHRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 235 | 235 | 5.1E-118 | – | |
| PANTHER | 1 | 235 | 235 | 5.1E-118 | – | |
| Phobius | 1 | 209 | 209 | - | – | |
| Gene3D | 99 | 173 | 75 | 7.9E-13 | ||
| ProSiteProfiles | 103 | 169 | 67 | 18.792 | ||
| SUPERFAMILY | 108 | 166 | 59 | 2.4E-10 | – | |
| SMART | 110 | 163 | 54 | 3.4E-16 | ||
| CDD | 111 | 163 | 53 | 3.36932E-13 | – | |
| Pfam | 111 | 162 | 52 | 7.7E-10 | ||
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 210 | 229 | 20 | - | – | |
| Phobius | 230 | 235 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0574100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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